RNA id: XM_026914805.2


Basic Information

Item Value
RNA id XM_026914805.2
length 1484
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC113527221
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 22029089 ~ 22035625 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCATGTAGGACAAGGCAATCCTGAACTATGCAGAGCCAAGTGGTTGCTGCTTCGGCATTCCTGTTTTGCTGtggtttgttttatgttttaatttggAACAAGATGCCGGAAAAATGGCCTAGTTTCCAAGCAGGCAGTATTCCTACAAGGGAATCAGATTCATTTTGGAGAAGTGGAGATGAAATCACAGGAAAGTTTATAACCACTACTGGGGCGCCTTCGCTGAATTTGTCCTCAGGAAAAACCACAAAAGGAGCGTCAGAGCATCATGTGCCTTTAAACACATCAGAGCTTAAACATCAGATCAACATAACCCCTATTCCCATCCTCTATATTAAAAATTTCACTAAGCTGCCCAAGTGGGACTTTGAGGATGTTTACATGCAGAGCAGTGAAGCACGACGGCCGGTCTGTTCAAAGTCTCTCCAGAACTCCAAAGATAAAGAGTTTCAGGAGGCCgcgttgtggaacatccagcTTTGGCTCCACAATGGCCACCTCAATGTGAGTGAGTGGAACCGGCTTGCGCACTTCAACAACCCGTTTGGGTTTATGGAATATACCTATACTGACATCAAAAAGTCAGTCGATTTGATCCCGAAGCCGAAGTACAATCAGCTTTTGCCAGTGCCCAGTGGGTCAGAGGATGGATGTATTCGCTGCGCTGTAGTTGGCACCGGTGGCATTCTCAACGGCTCCAAAATGGGCAAAGAGATCGACTCTCATGATTACGTCTTTCGAGTGAATGGAGCAGTCACTAAAGGCTTCGAGGAAGATGTCGGAAATAAAACCTCGGTGTACGTGCACACGGCGTTCTCCTTAAGCCAGTCTGTTATACACCTGGGAAAGTATGGCTTCAAGTACAGTCCACAGGATGAAGGAATTAAACATGTGATGATTCCAGAGGGTCTTAGAGATTATGAGTGGATTGAGGGCCTCCTGGAGAAAAAGAGGATGACATACGGATCCTATAAAGGTTACAGGCCTCTTACCTTCTACAACGACCGGTTCCAAGAGGATAAATTTTATGTCCTTCATCCGGACTTTCTACGATACATCCGGAACAGATTCATGCCATCCGAAAATCTGAAGGAATCGTACTGGGCTTTATACAGACCGACCAATGGAGCATTCACATTGTTCTTAGCTCTTCACACCTGTGATATCGTGCATGCGTATGGATTCATCACGGCAGACCACAGGAAATACCCCAACTATTACTTTGAAACCACAAAAACTAGGGTTGTTTTTTACCTCAATCATGACTATAACCTGGAGATAAAAACCTGGAAGAAACTGCATGATGCTGGAATCATCACCCTTTACCAAAGACAGGAAAACTAAACCAGACTGTGAATTAATGAACTCTTTTCAttcatacagtactgtgcaaaaacttaggcacatgcaaaaatatgctgtagagcaaagatgccttcaaaagtaatgaaatgaaaagtttctacatttaaaataatacta

Function

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K03479 SIAT7A, ST6GalNAc I; alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7A)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237327 lncRNA upstream 2608 22013806 ~ 22026481 (+) True LOC113527202
TU237320 lncRNA upstream 29197 21999686 ~ 21999892 (+) True G200569
TU237312 lncRNA upstream 40335 21988186 ~ 21988754 (+) True G200561
TU237311 lncRNA upstream 41220 21987520 ~ 21987869 (+) True G200560
TU237310 lncRNA upstream 42088 21986362 ~ 21987001 (+) True G200559
TU237575 lncRNA downstream 78781 22114406 ~ 22114822 (+) True G200779
TU237582 lncRNA downstream 88608 22124233 ~ 22242312 (+) True G200784
TU237612 lncRNA downstream 312265 22347890 ~ 22348118 (+) True G200807
TU237831 lncRNA downstream 831283 22866908 ~ 22868838 (+) True G201019
TU237911 lncRNA downstream 1067659 23103284 ~ 23103499 (+) True G201093
XM_034309366.1 mRNA upstream 3395 22014076 ~ 22025694 (+) False LOC113527202
XM_026915256.2 mRNA upstream 16785 22008511 ~ 22012304 (+) True srsf2a
XM_026915255.2 mRNA upstream 17237 22008511 ~ 22011852 (+) False srsf2a
XM_026914657.2 mRNA upstream 62342 21961174 ~ 21966747 (+) True nat9
XM_026914659.2 mRNA upstream 62812 21961118 ~ 21966277 (+) False nat9
XM_034309324.1 mRNA downstream 2347 22037972 ~ 22089270 (+) True si:ch211-119c20.2
XM_026914927.2 mRNA downstream 2347 22037972 ~ 22089270 (+) False si:ch211-119c20.2
XM_026914928.2 mRNA downstream 2347 22037972 ~ 22089270 (+) False si:ch211-119c20.2
XM_026914930.2 mRNA downstream 2509 22038134 ~ 22089270 (+) False si:ch211-119c20.2
XM_026914931.2 mRNA downstream 2517 22038142 ~ 22089270 (+) False si:ch211-119c20.2
XR_003402874.2 other upstream 16785 22008511 ~ 22012304 (+) False srsf2a
TU237322 other upstream 25815 22002824 ~ 22003274 (+) True G200571
XR_004579324.1 other upstream 2462405 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 3216827 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU237829 other downstream 762556 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 1170041 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 1288448 23324073 ~ 23329571 (+) True G201214
TU238026 other downstream 1321886 23357511 ~ 23398660 (+) False polr2a
TU238950 other downstream 2346162 24381787 ~ 24382287 (+) True G201962

Expression Profile