RNA id: XM_026914825.2


Basic Information

Item Value
RNA id XM_026914825.2
length 5937
RNA type mRNA
GC content 0.43
exon number 6
gene id nfe2l1b
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12407353 ~ 12415790 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAAAACGTGCTCCTCTGTCAGGGAACTTATCGGCAAGGGAGAAATTTTGCAAGTCATGGTGGGCCATTCAAGACAAGTGGACTACGACAACATTAAGTAAATCTATGGAAATAAGTGACTTTTTCAAGAAAGTGACTGCCTTATGTTGCTATTGAATACCGTCTAGACGTTTCGGGCTGTTTTATCCCTAAACTCTTTATGTATTGGAGGAGCTTTCAGAGAGTAATTGAAAATTGAATGGTGGAATCTCAGCATCTGACAGGATAGACATTCGCCACTGAGAACAAAGGAACCCTCATCTTTCCCCCCATTTCCCCCTTCTTACCACAAGccaatgtttttgtaaaaacacTATATTTTGTAATGGTTTCTCTACATTTTATACTCATTTATGCAATATAGAACACTGACTGTAAGTGTTCCAGTTTGACCCTCGTTCTgttaggtttttgtttttgtttttttttttgttttgttttgtttttaactttcattttgtttcctttGCCAAGAAATGCTTTACTTGAAAAAGTACTTCACAGAGGGTCTGATTCAGTTCACTATCCTCCTGAGTCTCATTGGGGTGCGGGTGGACGTGGACACCTACTTAAACAGTCAGCTGCCCCCGCTCCGCGAAATCATCTTGGGCCCGAGCTCagcctacacacaaacacagtttcACAACCTGCGCAACACCCTGGACGGCTATGGCATCCATCCGAAAAGCGTGGACCTGGACCATTTCTTTGCCATTCGTCGGCTGCTGAATCAGGTGCGCTCTCTGGATCACCTGCGTGTGCCCAGCACTGAGTTGAACGCTTGGCTGGTGCACCGTGACCCTGAGACCGTGGTGTCTGCAGCCAGCCAGTCCAGTCCCAGCATTGCCCTGGACAATGGCGGCAGCCTGGAGGACGTGAACAGCCCTGAACCCTCGGCCATGAGAGGGACCGGCGGCACTTCTGAGTCAACCTACAACCTTAGTGGAGAGGACAGTTTGGGTGCTGTGGCCCCTGAGGCCAACCAGGAGCAAGGCAACAGAGACAGCGTTGATGAGCTTTCTAAAGAGGACATAGACCTTATAGATATTCTCTGGAGACAGGATATTGACCTCGGAGCTGGACGGGAAGTGTTTAACTACAGCAGCAGGCAGAAGGATGGTGAGGCAGATAAACCGAATGAGGCAAATGAGGAGGCAGGTGTGCAGGAGGAGGACTGGAGAAATGGAATCAATCTGCAGGAGGGTCAGGGCATAACTCTTGTGGATGGAGAGACCGGAGAGAGCATACCTGAGCAGCTCTCCAGCCTTGGCACACAGACCTCAATGTCCCTACAGGAATGCCTAAGGCTTCTGGAGGCCACCTTCCCTTTTGGAGAGGAATCAGAGTTCCAAGCTACAGAAGCTGACCCGCAACTGAGAGGCCCAGCAGAAAATGTTCCTTCAACATCTCAGGGGCTTTCACTGCCTGCCCCTTTGCCTCAGTCTGATGCACCTCTAGACCTGGAACAGCAATGGCAGGACATAATGGCAATCATGGAACTGCAGGACATGGATATGAATAACACAGCAGAAAATACCAATCTCAACAATAACCTGAATAACACTCGTGCTAATACCAGTGAATCTGGCACAATGACAAGTTTTGGTGTTCCACAATCCAGTCTGATCAACCAGGATGTGAGCCTCCATCAGGCATCCCTCCCAAGCTGCAGCCAGGACCTCCCCAACCTTTTCAACTCTGAATTAGATCCCTCTGTTGGGCAGAGGCCTACTCTCCTTAGGCTCTCCTCCAGCAATTCATCTAATATCAACTCAACATTTGGAGTCACAAATCTTACTGGGCTGTTCCTCCCACCACTCAACAGCACCAACAACTTAACCTCTTCCCCAGTGCTGCCCGATCCCTTTGTTAGCCTGCTGGAGGAGTCCATGCTGGACGAAATTAGCCTTCTCGACCTTGCAATGGAGGAAGGGTTCAGTCAGGCTCAAGCCTCTCAACTAGAAGATGAGCTTGATTCGGACTCTGGACTGTCTTTGGATTCTGGACATAGCCCTGTCTCTCCCAGCAACTCTGAGACGTCTTGTTCCTCGGCTGCATCTTCGTCCTCCACCTCTGCCACTTTCTCTGAGGAAGGTGCTGTGGGCTACAGCACAGATTCTGAAGTGGCCACGGCTGAAGCAGAGGAGGGAGCCGTTGGGGGCTACCAGCCCGAATATAGCAAGCTGTGCCGCATGAGCTATCAAGATCCCTCTCATTTTCATAACCTGCCACAGCTGGACAGCATCAATCACAACCACACCTACAATCTGCCACTGGCCTCCTCATACCCTGAGCAGCCCCAGCTGCTTGGATCCTGCAGTAAAAAGTGCAGAGACAAACACCTACAACAAACCAAGATTCATCCACCACGAGAGTTCATCGACAAGCAGTCGAGCCGCGATGAACGTCGGGCCAGAGCCATGAAAATCCCATTTTCCAACGATAAAATTGTCAACCTTCCTGTTGAAGAGTTCAACGAGCTTCTGTCCAAACACCATCTCAGCGAGGCCCAGCTTTCCCTCATACGTGATATCCGCAGACGtggcaaaaacaaaatggctgcacaGAACTGCCGCAAACGCAAGCTGGACACCATCATCAACCTTGAGCAAGGTGTGCAGGATCTGCGGCGTGACAAAGCCCGGCTGCTGAAGGAGAAGATGGAGTGCCTGCGCTGTATCAGGCAGATGAAGCAGAAGGTGCAGATCCTTTACCAGGAAGTGTTCAGCCAGCTGCGTGATGAAGAAGGCAGGCCTTACCCTGCTAGTGAGTATTGCCTGCAGTACAGCGCTGACGGTAGCGTGCTCATTACGCCACGAAGCATGACTCTTGAGCAAAGCCGGAAGCCTGACAAGAAACCGAAGGACAAAAAGAAGTGAGGACCTGCTCCTTTGTTTTGCTGCCAAGGCTCcaccaccacaaaaaaaaaaaaaaattactataagGTGGAagtaaatgctgtttttttcctttgagaAGATTCTAGCAAGGAAAAGAAAATTGCACTGTCAGTGTTGTTCCTGCATTAGGTTTTctccttgtttctttctttggttCAAATGTTTTCTCCAGAAAATATGAAGCAGAATTGCTTTTTAAAGTACcgattttctgttgttttactTGGAGTATGACCAGAATGGTGAATTGACTGAATCTAAGAAGAGTAAAAGAGGCAAACCGCGGCTGTGGAAACACTGACTAATCTGAGAATAAATTGAGGAATTGACCTTAATTTCCATCAAGATCCCAAAACCAAAATGAATGTAAGGCTAGCCAATTATCGGCTTGGAAAGGTCATTAGACTCTTTAGTATTGGCCTCTGAGGTGTGTGATTACCCTGCTGGTAGTCCTTTAGCATTAAAGAAGAAGGCCCTTCTTTCTGAAGATGGTGGAGAAGCTCTCGGGAAGTTGGAAGATGAACTTTTGTGTCgagaaaacaaatgcaaaagaaaGCATACCCTTAGTAACCAGTGGttgtgcatttcttttgtttctggTTCCATCACAGTGGTCAGTTGTGTACCTACACCAATGTGATTTCAATGACATAACAACAAGGAAATGACATTTCCTTTGGACGGTTACATGTGAAACCTGACAGAGGTTTCTCTGGGTATTAAATGCCACTTGCCATGGAAATAGGAAAAGTTGGACAAAGTAGGCTGGTTAAGAATGAGTTTGAGGTAATGCTTGAGGCTGGAATGAATGAGATGAAAATTAAATACTGAGTAAAGATGCACACTGCATTACTAATAAATCAGCTTCTGTGCTCTGCTCACTGCTGTAAATCATCTCTGTCGCTTGGCTGTAAGCTCTCAGTCTTTAGCAGTTGTTTCTCTTCTGCAGGCTTAAAGGTGAGAATCTCCTCCTTGAACCTTTCAGTAGTTTTCTTCCCATGTGCATAAACTTCTACATAAGCTACAGGCCTGATTTTGTTTCTCCTGAATTCTGTCAAGAGCATTTCATTGCTTAAAACCGGACGTtctaaaaaaggaaaaaagaaaatcaaaacaaccacaaaaaaaactgtacagaGTTGTTATGCTGAATTTCAGCTCGTCACCTGCTTTTCAGAGTTACTTTCTGGCTTAGTACCGGACTGCTACGTTGTTCAAACAACAGGCGCAAAAAGTACAGTTCTCACTCCAAGTCAGTTTCTTTTAGTTGCAGTAGTTTTCTGTAATGctctttttctgtttgattATGACATGGACAGTGATACTCTGAAATATTGAGAATATTggcttaatgttcacatcattaGAGCATAGTTCAGTAGTAGTTCCTTTTTGGATGAAccagtgtgtaaaagtgtgaagTGAACATCACATCTTttcattaatgtatttttttcgtTTTCTCTTTTACTTGTGGAACTTCCCCAGTTAAACAGACAAATTTCTGAACACTACCATGTTCCTGTTTAGTCAATAAAATCACCTGGAGATCTGAAAAGCTGCTTAGCATGTACCACAGTGGAATTGGATCATGCTTCGGAAATGCAGCGTAACAGTTGCTTTAGAACTATTCAGGAGACTAGCATACATGTGAAATATAACATCTTTAAAATGGAGCTTTAGCACTAATAAGAAAGCTTTAATCCTCACCAGACATATGCATCTTCATAATTTATTCACTTCTACCGGTTTCCATTGCTCACAtctacacagcacacacacagagccacatGTGTGGAGTTATTTTCCTGTCAAAAGTAGTTGTACGTAAAGATCGCAATTATATCATACTTTTATGAATTGAAAATTCACGGAATTGTTCATATGCAACTGCGATTATAACCTTGTTATATGTTAACCTTATGTTAAGTGGCACCCTCATATCCAAGTGCAAGTCCTACTTTACATCTTTTCATGTCTTGTTCTTGTGATTTCCAGTCACAATTTATGTCGAGTCGTTAACCAAGTTGTTTTAACAGCTTTTGTACTATCACTTTTTATGCGCCTCAAAAGCGCATTATTGGCACTCAACTCAATCTTATGACTGTAAAAGTTCGAGGGGTATAATCTAACCAGAGAGCTATGGGGGCTGGCctcagacaaacaaaaaaacaaacattaaaagttATCAAGCAGCTCGCCTAGGCCAGGGGTCTTTAATTACATCCACAGTGGGTCAGCGTGGCTGGATTGCCGGTTTTCATTCCAGCCGAATAGGAGCCATATTTGGTAGTCATTTGAAATCCAAGATCAGTTGAATTAAGTGTTGTTTATAAGTGGTATTAAAAACAGCCACAACGGCAGGTAAGGTTGAAGACCACTGACCTTCAAATCACATTCTTAAAGATGCGGCTACAAACTATGCACGTAAAGCAGTATTCTCTAAACCCATCAAGTAGTGTGTTATTTATGAACTGAATGTTCAAATAAGTATTTGAAAATGGCCACAACAAGCTTACATTAAGAATTTGTTGAAAGTTGACTGAATTTGCAATTCATAAAATGACGATTTGTCAGGAAATGCACTCTGTACATGGGGCACTCTGTCTGGTTGTTGCAGTATGCAAGGAGGAAAAAGTCACCATTATTTTGACGAGAGAACTTTTACGATATTTAATAGGTATGGAGTAGATcaagttaattatttaaacaacaacaaaaaagatcaGGCATGGAAATTGTGCTTAAAATAGTTTAAGTTCCTGGTCTTATGCTGTCACTACTTGTCGTCATgcactgatttttttgtgtcttgtttgttttgtaaatatgtttatgttgtttgttttgatttaaagATATTTTGGCCCTCTGTATTTTACCAGGCCTTCTGACTCCTTTTTGATTTAGATTCACTTCCTGTTAGTTTATTTTGAAAGATTTGCTGGCAATCTGGGAATTGTTCATTTGTTGgttaataaactttttttttttttaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231049 lncRNA upstream 33073 12374010 ~ 12374280 (+) True G195084
TU231048 lncRNA upstream 36068 12371056 ~ 12371285 (+) True G195083
TU231012 lncRNA upstream 157598 12249060 ~ 12249755 (+) True G195047
TU230980 lncRNA upstream 231234 12174394 ~ 12176119 (+) True G195016
TU230966 lncRNA upstream 262146 12145001 ~ 12145207 (+) True G195002
XR_004579205.1 lncRNA downstream 36103 12451893 ~ 12453678 (+) True LOC117598562
TU231214 lncRNA downstream 134344 12550134 ~ 12550360 (+) True G195225
TU231292 lncRNA downstream 227478 12643268 ~ 12643526 (+) True G195287
TU231306 lncRNA downstream 242315 12658105 ~ 12658323 (+) True G195301
TU231526 lncRNA downstream 428535 12844325 ~ 12844561 (+) True G195512
XM_026914609.2 mRNA upstream 9220 12390793 ~ 12398133 (+) True cdk5rap3
XM_026915356.2 mRNA upstream 23786 12378478 ~ 12383567 (+) True pnpo
XM_034309096.1 mRNA upstream 23786 12378789 ~ 12383567 (+) False pnpo
XM_026915883.2 mRNA upstream 46710 12348960 ~ 12360643 (+) True tbx21
XM_026915940.2 mRNA upstream 90249 12269685 ~ 12317104 (+) True tbkbp1
XM_034309620.1 mRNA downstream 6960 12422750 ~ 12430535 (+) True phkg2
XM_034309621.1 mRNA downstream 6960 12422750 ~ 12430535 (+) False phkg2
XM_026915424.2 mRNA downstream 18745 12434535 ~ 12446996 (+) False rnf40
XM_026915425.2 mRNA downstream 18841 12434631 ~ 12446996 (+) True rnf40
XM_026915683.2 mRNA downstream 47072 12462862 ~ 12466434 (+) False znf668
trnaq-cug_16 other upstream 1121085 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 2342727 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 2772286 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2893518 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2894722 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 56893 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1067511 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1067511 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 4439980 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5161493 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile