RNA id: XM_026914843.2


Basic Information

Item Value
RNA id XM_026914843.2
length 5847
RNA type mRNA
GC content 0.50
exon number 18
gene id fbrs
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11486623 ~ 11497065 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aCTGAAGCACACAATGCAGTTTCACTGTAGCGTTATCCACCCAGGATTCACGTTATTGCCAGCTTTTCAGCTACcatgaaaaaatatgtatatatttatctgATTTTGACGATCGGGATTTATTGCAACGTTTTATGAATTCCTTTAAAGATCACACTCGAGAGataatatttatttcaactGCGCAAACAGGGAGATAATTGAACTTTCCCGGACTGAGTAGATTAGACAGTGGGCCGCGGGAGGAGGAGGCTGGCCTGCGTTACGGGCGCTAACGCTGACGCTGCATGTCCGTGTAAATCGAGCCCGAGGCTTCGGGGCCTACACCACTGTCGTCTAATGGAGACCGGACCAACCGAGCAGAAGCTCGGAGAGAACGATCATTCGTATCGGCACCTTTTGAGTGATGAAACTCACAATGTCTTGAcacaaagacagtaacctgGAAGGAAATAGCCTGAAGTATACAACAGCCTGGTTTTATGGAAAACACATCCTCAGTCAACCCTCATCAGACAGCCGTGTGCTGATGGCATGCATTCTGCAATGGCCACAAAGCTGTAAGCAGACATATTAACTCCACTTTCAACTGGAGTACCTACATTGGTCCAGGAGGTGTTGGTTTCCCTCAGTAAAAGTAAGGTCCCTTTGTGGACCAAGGTTTTAGTGCCTTTTGTACGGACTGTGTAGGGTTCAATTTGACATGGATGGGCCGAGTCGAAGCGGAGGGTTGAGACAGAGCCGTCGCTCACGTTCTCAGCGCGATAGAGAGCGACGCAGAAGGAGAACGGACCTTGGGGCCTCATCGCCTTCCTCAGGCTCAGAGCAAGAACGTTGCAGAGACTCCCTCCTTGGTGCTAGTGGTGGAGAATGTCGGCCCGTCTTTCCAGGTGCCAGGCACCGGCCTCCACGTCGGAGGAAGCGAGAATCTGTGTCTTGTGAGGAAGACATCATCGATGGATTTGCCATAGCCAGCTTTATAAGCTTGGAGGCTTTGGAGATGGATTGTTCTCTGAAGCCGCCAGAGCGAGCTGGTATGTTGATGGGGAGAGGGAGCAAAAGGAAGAGAGGCCTGGATGAGAATGGAGGGCCACTCACAGAGCCAGAGGAAGGAGCTCCAGCTACTTACACCACCAGCAGCTGGGAGAAGCGtagaaatgagaagaaaaagagagaagccAAGGTGTCAGGAAACACCATGGAGACAGGATACATTTGTGATGCAGAGAGCGAGTCAGGGGATAAGGCTTCTGACAATGATATGGAACCTACATTCATCGTTAGCACTAGAGAAGTGTCCTCCAACCCAGTAAGTATGGCCTCTACTGTGAGCAATGGCTGTGCCCTGTTGCCTTCAAACAGTGGGCCTGCTCGTCTGTCAGTGACTCCCCGAGTCTCTGGCCTAGAGCGTAGTCAAGAGAGGAGTCTGGAGCTGCCATACCCTGAAGCCACCTCTACCTCATCCTCACTTCTGTTGCCCCGTTCTCCGGCTTCTGTCTCCACCTCACTGGCCGAGCAAAATGGAAATGCGGCACTACACCACCGCCATGATTGCAGCCCCCCGCAACATAAACCGAAATCGTTCCTCTCCATCCCTGGCCGCCCACATGGTGTCTATATCAACAACAGgaaCAGTACTTCAGTTAAGACTACATCTTCATCCGCCTCTTCCTCATCAATTCGACCGTCCACTCCCTCTACTAGTATATCTGCGGTCCGAGGCCCATCTGGGCCATCTGGTGTGCTGCGGCCTTCATCACGCCCAAGCCCTGGTGCGCTCTTCACCCCTCCACCTGTTctccctccacctcctcctcttctgcAGGTGTCCCCTCGCTCTTCAGGAGATTCAGAGCTGCTCCGTCAGGATATGAACCCGCACTTCCTGGCCCAAAGCACAGAGCGGGAAGGAAGAGCCTCTGGGAGCAGTGCTGGAGTGAGTGCAAGCTCAGCATCAGGTGGCGCTTCCgtttcctcctccagctctGGGAGCTCCAGCAGGCCAGTGCAGGCCCAGACCTCTATCCCACCGTTGGCCTACCAATTCCATCAGCACAACCATCAACACCagcacacccacacccaccaaCACTTTCTGCACCCACCCGCTGCAGCTCCTCCAATGTTTGAGAAATTCACAGGCAAGATAGACGGTCTCTTTCGACACCCAtTTTTTCCTCAGTACCCACCTCCTGTGCCTGGAATCCAGCCTGTACTTCCCCCCACTGGACCATTTAGTTCCTTGCAAGGAGCCTTTCAACCCAAGGGAACTGCTCCAGATATGCCTGCTCGCCTGGGAGTTGTGCCATCCCACCTCCAACCTAAAGACCCCAGGATAACAGACCCATTTGCACCATCACTAAAAGTCAGTAGTAAGCCAGGAAAGTGGTGTGCTATGCATGTGCGTGTGGCCTGGATGATTTTGAGGCATCAGGAGAAAGTTAagTTGATGCAGGCAGATCCTCAAAAGCTGGAATTACGTAATGACTTGCTATCCCGTCTCCCTGGCCCTGGTGGTATTGGAGGACTAGGCAGTCTAGGAGCACTTGGAGGTCCTCTGCCTCCATCCCATGATCTCACTAGACCCGGCAGTCTCTTTGCAGCTGCTAATCCATACGGCCGCTCATCCCCCTTTCCACCTTTGGGAGCACTGGGTGCTGGTGCCTTTGGGGGACTGGGTAGCCCCTCACTGGGTGCTAGTTCGGTTTTTGGCCATAAGGCAGAATCCTCTGCAAGTGCAGTAGGAGGATTGGGCAACCCACATGATCCATGGAATCGCCTACATGTTGCCCCTCCTTTTCCCTCAGGACCCTCTTGGGCCAAAGGACTAGAAAAAAGGgatgagagagatagagggaaagACATGGGAGGAAGAGAACTGACtcaaataaaagatgaaaaagacaGGGACAGTCTACTTTATGGTCGTCAACCTGTGCGAATGTCCCCTGGTGCACTCAAGCACCGCAGCAGCACTCCTAGCTCTCACATGAATGGGCTGGGCCCCCTAAGCGTAGTTGCTGCTCAGTCTGATGGACAAAATAGGGAGCGGGACCGGGATCGTGAAAGAGAAAGGGAGCGAGATCGAGAGTCAGACAAAAGACAGCATTCATCCTCCAGGGTACCAGCATCAACCTCCTCAGCACCAGACAGACCTCGGTCATCCACGTCATCTGTTCTTGCAACCCCTCCTCCAAATGCTCCATCAGCATCCTCCCCTCTGGACTTGTTTGGTAGACAGGCACATGCTCTCAGCTCAGAACCCTCCCATCCATCCCAAAGAGAGAGCAGTGGTCCAGCCTCTTCCTCGTCCTCAGTCAGTTCACTTTCAGGCAAGAAGCCTGACCGGACGGCGACTCCAGTTTCTAAGCCTCCCACTAGTCTCCCTCCTGGGCTGCTTCATCCCCCAGTGAAAGTcaaggaggagagaaaggaggagcCTGAGCCAGTGCCCATCTCCCTACCGCACCCAGCCGTACCCCCTCATAGCTTTGAGCGTCCTAACAGTCGCCACACACACCATCCTTCAACTCCTTCTTCAACCCTTCCATTGGCTCCCACATCTGGAgtgcctcttcctcctcctacCCCACACCCTACCCACCATCATCTTCCACTTCTGGATCGCTCCCGGTTGGCTATCGAGGCTTATCTTGGTGGAGCTGGTGGATCAGCTGGACTAGTTGTAGGAGGTCCACCGGATCGATTTGCCGCTCATCCGCATACACCACCTCAAGGCCACTCACAGGCTCCTCACAGCTTCCCCTGGGATCCTTGGAGGGAACTTGctgctcagcagcagcagcagcagcgtaGAGAGATCTTAGCCCAACGGCCAGATCCCCATCTTGCACTGCGCACTGATCCGCACTTGTCCCGCCTACTTCAGCATCAGCATGCCCGATACCTCGAGGCAGAGAGAGCAGCTGCTGTAGCGGCAGCAGTGGCAGTGGGCCCCCATCATCCAGCGGCACCTACCTCCACTTCTTCAGCTTCGTCCTCTGTGACCCGGCCAGAGTTTGGGTTGATGTCTCATCCTTTTGATCGCCCTCCTCAGGTTGGTGGCCCTGGAGGCGGGTTGCTGGATGAGGAACAGCGTGCCCAGATATTGCGTGAGGACTTTGAAAGGGCGCGTTATTTTGGGATGCATCCACACCTTTCTACGCCTCACCTGCCCAGCCCATCCCATGCAGCCCACCTAGACCAGCTGCATGCAGGCTTGCTGTCTCACACTCAGCTCCATCCTCCGGGAGGCTCCACACCTTCACATCACCCAAGCCTCTATTCCCGCTTGGGCCCACTGCATCCACATTCTCATGTTCCTAATGGAATTCTCTCCAAGACGCCCAGTCTAGTTGGGCCCTTGTCAGTTGGGGCACCCCCTCCACTTATTCCATCTGTGACGAGGGCCTCCACCCCGCCTCGCAGTTCCAGACTCGGTGGGGCTGGAGATTTGGCCCTGTTCAGCTCACATAAGGATGGAGAGTCCAGATAGTACTAGGGAAGGCTGAAGCAAGGGATTTACTGGTCTTGAACTGCGAACTTTGAAGTAGAAGTTTAAGCAGGACACTCCAAGCCTGCTGAAGCTACAGTGATCATACATGAGTGTTCAAATTACCTGAGTGGAGGGCAGAGACACTTCAGAGGGCTGCTCAGTATATTTATCCACTGTGGTTATATTGGTGCAATTTAAGGTACATCcacccccccccacccccacccccactccagtgcttttcatttatatttaggATTTTCTTAAAGAGGCCTGTGGATGTTCAGAGACTAAAGGCTGTGttctgtaatattaaatatatacgtACAAGCCCTGCAGGGTTGTCTTCAGGCTGATGGCTCCAGAGGTGTATTCAGAGATAAGTTTGCATTGTACTGCATTGTGTGACACATGTATTTCCCATTTATGAACTCATGGCTGTAAAAAAGCCATCTATAGAGATTGAGATCTGCATATGAAGAAGTGGGAAATGGATTCTAAGACGGCTTAATTAgtgcttttctgtttgtttagtGCGTGCTCTGTCTATAACTAGATTGAAGAAACAGCACTGTTGGAAAATGAATTTAAAGAAACACATCGTCTGCTTTCTGCTCTCAATGCATCTACAGAAAGACCGTGAACAGAGGCACAACTTCCATGAACGTTACAATGAACGTCtgcagaattattttattttaatctttaaaaaaatattattaactgTACATCttgtttgatattttaaaatttaaatggaaaacaaaCTTTCCCATTTTCCTACACTCTGACTCTACATGAGCTGGAACAGAATACAGTAGAATAGTGATATTccttttgtaattattattgttaacatTAATTAccttatataataaacatattcacTGTTTGTTATAATGTCATTGTTTCAGGTCTCAGCAGTGGCACTCCCTTGTTAAAGcaagacaattttttttcaaaaaaaaaggcagtaaaACTGCTTCAAGAAACTAGCGATGGCAAATGCCTGTGAACTGAGTTTGTACTTCTGACAAAACCTGTCCTCTTTAACTGTTGAttcatgaatatatttataaattgaGAGATTATTGTGATGAGGTCTAAACATCCATGTGGGGGCAAACATTTTCCATAAAAGATGCATTGCATACAAGCATGGACCATCAACTGAATAAAAGGATGCTGGTTTTGTATGTGCAAACCAACAGCAGGATTGAAGGGACTTGTAACTCGAAAACAAGATATTACTGGTTAACTATTTGAGCAAAACAGTTTTATACCTTTAAGTATGTTCCCCTCAAAAAGAAAGCAAGTAagaataattattaaacaaaactgTTGTTTATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230438 lncRNA upstream 107433 11378461 ~ 11379190 (+) True G194571
TU230242 lncRNA upstream 238516 11247763 ~ 11248107 (+) False si:ch73-139e5.4
TU230183 lncRNA upstream 279647 11135232 ~ 11206976 (+) True G194360
TU230204 lncRNA upstream 366073 11120318 ~ 11120550 (+) True G194380
TU230113 lncRNA upstream 390445 11093163 ~ 11096178 (+) True G194293
TU230527 lncRNA downstream 95827 11592892 ~ 11593091 (+) True G194627
TU230523 lncRNA downstream 100465 11597530 ~ 11602441 (+) True G194623
TU230532 lncRNA downstream 117324 11614389 ~ 11621269 (+) True tmem106a
TU230688 lncRNA downstream 221832 11718897 ~ 11719113 (+) True G194748
TU230779 lncRNA downstream 541438 12038503 ~ 12038728 (+) True G194828
XM_034309372.1 mRNA upstream 4576 11477848 ~ 11482047 (+) True msl1b
XM_026915391.2 mRNA upstream 14656 11466159 ~ 11471967 (+) True calcoco2
XM_026915390.2 mRNA upstream 14656 11466171 ~ 11471967 (+) False calcoco2
XM_034309457.1 mRNA upstream 14656 11466212 ~ 11471967 (+) False calcoco2
XM_034309518.1 mRNA upstream 21250 11457352 ~ 11465373 (+) False stx4
XM_026914835.2 mRNA downstream 253 11497318 ~ 11522715 (+) True srcap
XM_026914837.2 mRNA downstream 253 11497318 ~ 11522715 (+) False srcap
XM_026914836.2 mRNA downstream 253 11497318 ~ 11522715 (+) False srcap
XM_034309269.1 mRNA downstream 1440 11498505 ~ 11522715 (+) False srcap
XM_034309120.1 mRNA downstream 31829 11528894 ~ 11536124 (+) True ttll6
trnaq-cug_16 other upstream 200355 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 1421997 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1851556 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1972788 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1973992 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 975618 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1986236 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1986236 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5358705 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 6080218 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile