RNA id: XM_026914880.2


Basic Information

Item Value
RNA id XM_026914880.2
length 3164
RNA type mRNA
GC content 0.46
exon number 10
gene id fshr
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17316264 ~ 17326970 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCTTTGGCTGTAGTACTCTAAACCAACCACGCTGCTCAGCAAGAATCGCCCTTCCCACAACTCCAGCCACAATACTCCGAACATCTAGCATCCCAGCACCACAAATCCACATAAACAGCTCCGACTCTTACCTGGAGTGTGGAGATGGAGGCTTCAGCAACACAGCACTGAAGGCCTTGCTCAGGCTTTAACAGAGTAAAATAAACCATCACTCAaccacacagcacagagagagagtatacTGGGAGTGCATTTCTCCATCACAATGAAGAAGCTGGTCTGGGTGGTCATGCTTCGCTTCATGCTCTCTTGGCTCATGATGCACACAGGGGATGTGTTTTTGGGATCTTATGCTTGTTTGGCCAATGGGACAACTCGCTCCTTCTTGTGTCTTGGCAGCAAAGTGCATCAGATGCCATGCCATATACCAAAAAATACCACATACGTGGAGATCAAGCTGACTCAGATCATCATGTTTCCAAGTAGAGCCATGTCATCACTTCATGACCTCAAGCGAATAATGGTGTCAGAGAACGGAGTCCTCCAGCGTATTGAAGCCTACGCATTTGCAAACCTGACTAAACTGGAAGAGATTACTATTACTAAATCAAAAAATCTTGTCAGTATGGACAGAGACACATTCTGGGGACTTCCAAAACTGAGATATCTGACTATTTCAAACACGGGTCTCACAGTCCTACCTGACTTCTCCAAAGTCCAGTCTGCTGCTTTTGAATTCCTGTTTGACCTAGAAGATAACATACATATTGAAGTGATACCCAGTAATGCTTTTGCAGGACTTACCAGTGGTACAATAATCGAACTGAGACTGACAAAGAATGGGATCACTGAAGTGGACAGAAATGCCTTCAATGGCACCAAAATAGAAAAACTGTTTCTCATGGGAAACCAACAGCTGAAGCGTATCCACAACTACGCCTTCCTCGGTGCTGAAGGCCCCCTCGTTCTGGACATCTCCCGCACTGCAATCAGTTCCTTGCCAGAGAACATGCTGAGGAGATTGAAGCTGCTGATTGCCACCTCAGTCTACTCTCTGAGATGGTTACCCAACCTGGAGATATTCACAGAGCTCACCCAGGCCAACCTTACATACCCCAGCCACTGCTGTGCCTTCAAAAACTTCAAAAAGAACAAGTCAGAGAAGAACCATTTGTGTAACGATTCCACCATCCGCAACCAGGAGCCATACTTCTTTGAAGAGCACTGTAAGGATGTGATAGAAGTGAGCTGTTTTCCCAAGCCAGATGCCTTCAACCCGTGCGAGGACATCATGGGCTTCACCTTCCTGCGTGTCCTCATCTGGTTCATCAGTGTGTTGGCCGTCTTGGGAAACTTCACAGTTCTGTTAGTGCTCCTCAGTAGCCGCACAAAGCTGACAGTACCCAGGTTCCTGATGTGTCATTTGGCGTTTGCTGATTTCTGCATGGGCCTCTACTTACTGATAATCGCCTCAGTGGATGTACAAACCCGATCGCACTACTACAACTATGGCATCGAGTGGCAAACGGGTGCCGGGTGTGGCACAGCAGGCTTcctcacagtttttgcaagtgAGCTTTCAGTATACACGCTAACAGCCATCACACTCGAGCGCTGGCATACTATTACCTACGCCATGCGCCTGGAGCGCCAAATGCGGTTACACCATGCGTGTGGTGTCATGGCATTTGGTTGGCTCTTTTCAGTGCTTGCTGCACTAATGCCAGTGGTAGGTGTGAGCAGCTACATGAAGACCAGCATCTGTCTACCCATGGATGTAGAGACGGTATCATCACAGGTCTACGTTATGCTGCTGCTCATTCTCGACGTGCTCGCTTTTGTGGCCGTATGCGCTTGCTATGTGCGCATCTATGTCACAGTGCGGCACCCCGCCTCTGTACCTGACAGTGCCGACGCCCGTGTGGCCAAGCGCATGGCCGTGCTAGTCTTCACAGACTTCCTGTGCATGGCGCCCATCTCGTTCTTCGCCATCTCTGCAGCTCTCAGGCAACCGCTTATCACCGTGTCACATGCCAAGGTGCTGCTTGTGCTCTTCTACCCTATCAATTCATGCGCCAATCCCTTCCTCTATGCCTTCTTCACCAAGAGCTTCAAGCAAGAATTCTTTGTTCTCACCAGCCGCTTTGGCTGCTTCAAGTCACGCGCCCGTGTCTATCGTACAGAAACATCTTCTCTGCATAATGGCCCTAGGATGTGCTCACCCAAGAATAGTGATGGGACGCTATACTCATTGGGACATGTTGCTCATCCCCACTGACCCCCCAAACATTCCATATTCATACACTATAAGCTGTTCTCATCTACATATGATCTGTTCCATGCTGCTTAGACTTAAAGGAAATGAATACAGCTGTACAAACTTGtttggacaaaaaaagaaatgaatgcagCTGTACAAAATTTGCTACCATCAAATATATGTGTGCAAAACAGCCTCAACTCGCTGATGTTTCTTGCTTTTTCTTAGCTCTTATCTCAACTCCTCCTTCGTttagcacatacagtatgttcagtGTCACAGTAACCTTGCAGCAAGACCCAAGTCCAGATGTTATACCAGAAGGGACCTGACTCGGTAGGTGTCCTAAATGTTCAATGTTTGATTTACAACTGCGTCCGTGACTAAACCAGTATGAAACATGAAGCAAAGTCTTATTCAGTGCGGACTCTAAGGCAGCTTATCTGTGCACCTGCACTCGTGTTGGGCAACAAGACACAAGacagttgatcattttcctccTTGAAATTGTCAGTTTGAAAGAATAGGTGGGACATGGGAGATGTGTGGCAGCTGCAGCTGGTCTCTGTTGAATGAAGACACACAGGAAGAGGAATCTGGTATGATGATATGCCTCACGTATCAAGGCCTGGAGTTCAAGGCAACGGGTCAAGGGCTTAGTGGACAGAAAACCACACACAGCGAATATCCAAAAATATTCAGCACCAAATAATATTGCATCTATAAATGTATGTATCTATTCAACTACTTTATTATATGTCCAATAGCTTATTATTAGCAGTAATTCAAATTCCAATCAAAGCCATCAATATAGCTGTTTATATGCTTTCATTGTGAAATGGTTAGTTATGATgtataaagtatttttaaatagGGGATAAATAAACTTACATTGACGACTA

Function

GO:

id name namespace
GO:0042699 follicle-stimulating hormone signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004963 follicle-stimulating hormone receptor activity molecular_function
GO:0004996 thyroid-stimulating hormone receptor activity molecular_function

KEGG:

id description
K04247 FSHR; follicle stimulating hormone receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579295.1 lncRNA upstream 273017 17030750 ~ 17043247 (+) True LOC117598668
TU234194 lncRNA upstream 362253 16943946 ~ 16954011 (+) True G197803
TU234207 lncRNA upstream 409122 16906830 ~ 16907142 (+) True G197816
TU234113 lncRNA upstream 551937 16764008 ~ 16764327 (+) True G197726
XR_004579312.1 lncRNA upstream 552719 16758145 ~ 16763545 (+) False LOC117598690
TU234450 lncRNA downstream 804 17327774 ~ 17327950 (+) True G198007
TU234451 lncRNA downstream 19046 17346016 ~ 17348598 (+) True G198008
TU234498 lncRNA downstream 74435 17401405 ~ 17403628 (+) True G198041
TU234506 lncRNA downstream 78733 17405703 ~ 17411141 (+) True G198045
TU234503 lncRNA downstream 84484 17411454 ~ 17415869 (+) False G198044
XM_034309209.1 mRNA upstream 41703 17125184 ~ 17274561 (+) False nrxn1a
XM_034309211.1 mRNA upstream 41703 17125184 ~ 17274561 (+) False nrxn1a
XM_026915955.2 mRNA upstream 41703 17125184 ~ 17274561 (+) False nrxn1a
XM_034309210.1 mRNA upstream 41703 17125184 ~ 17274561 (+) False nrxn1a
XM_026915948.2 mRNA upstream 41703 17125184 ~ 17274561 (+) False nrxn1a
XM_026915604.2 mRNA downstream 141166 17468136 ~ 17473825 (+) True gch2
XM_026915218.2 mRNA downstream 153253 17480223 ~ 17487726 (+) True pigf
XM_026915018.2 mRNA downstream 218823 17545793 ~ 17572065 (+) True mta3
XM_026915019.2 mRNA downstream 218823 17545793 ~ 17572065 (+) False mta3
XM_026915020.2 mRNA downstream 218823 17545793 ~ 17570916 (+) False mta3
TU234137 other upstream 452769 16855770 ~ 16863495 (+) False anapc16
XR_004579176.1 other upstream 3757751 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 3757835 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 4842525 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 6029996 11286197 ~ 11286268 (+) True trnaq-cug_16
trnai-uau_6 other downstream 250313 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 828181 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 1114916 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 1479115 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other downstream 1479153 18806123 ~ 18811512 (+) False si:ch211-221j21.3

Expression Profile