RNA id: XM_026914889.2


Basic Information

Item Value
RNA id XM_026914889.2
length 5059
RNA type mRNA
GC content 0.46
exon number 28
gene id LOC113527265
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5817692 ~ 5849431 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAgtagtgtggtttgggacacagccgtCCTGTGataaagccttttttttctgtcttctttctttCGGTCTCCTTTAACCACACCCGGAACTCCGGCGAAGTTTTAACCCGATGAGTGGTCAGGTAAAGGACAGAGGTACATGTACAAAAGTCCACTTCCGAGTAGGAAGTGAAGGCGACATGAGAAAAGGTTCAGCTCTGGGGAGCCCGAATCGTTTGGATATGAGCGGTAAGGAGGCGGAAGGAGGAGACGCAGTGTCCAAATCCGAGAAAGACCAGAGCTGGATTGCGGCTGTAATCAAGAAAAGAGTGTGTACGACGTTTGTGGAGGATTCGTTCAGCAATGGCGCCCTGTGTCAGTGTGGGAGTGCGAGGGAAAGCCACGCCTCAGTCACTctaaatgattattttagtaCGGCCATTGTCAGTCGCTGGGATCGTTCTCAGCACACATCAGAGTCTCCCACTGATGCTTTTGGAGAGGTGCAGTTTGCAGGAGCCAGCAAGAGGCACAGCTATTTTCTGCGTCTTTCCTGGGATACTCCCCCTGCTACTGTTTATTCCATTTTGACCAGCCATTGGGGCCTGCCATCTCCAAACCTGGTGGTGTCAGTGGCCGGCGGTGTGGGGAAGTCTAAGGTCAAGACCTGGGTGCGAGAGGTTCTAAGGCAAGGATTGGTCAGAGCAGCCCAGAGCACAggagcatgGATCTTATCAGGAGGACTGCGGGAGGGTGTTGGCAGGTATCTAGGGGAGGCTGTGAGGGATCATGCTATGGCTGCATCTTCAATTTCCCTCTCTAAAGTAGTGGCCATAGGCATAGCTCCATGGGGTTTGGTATCCAACCGAGAACAACTAATCAACCCAGAGGGCAGTTTTCCTGCCGAGTACTACGTTCCAAACACGTCCCGAGATTCCTGCTTTCTGGATAACAACTACCAGGCATTTCTCCTTGTGGATGATGGGAGTGTAGGCCATAAAGGTGTGGAGGCTGATTTCAGAGCCCGCCTAGAGGACCACATTTCCCACCAGCGCACGGGAAAATGGGgAAGCGGAAGCATGGACATCCCTGTGCTGTGTATGCTGGTGTCAGGAGAGCCTTACATGCTTGAGAGAATGGATCTCTCCTTGAAGAAGTCTATCCCCTGGTTGGTCCTGGCAGGCTCGGGGGGACTGGCTGACTTGGTAAGCGACATCCTGGACAATGTATCGGCTGCACCAAGCCTGCCTGGGGCGGGGTCAGAAGGTGACGGGGAGGCGGCTACTAAAACAGATCTCAGGGGGAGAGTAGCGGAGAGAGTGCTGAAACACTTTCCCTCTGAAGAGGACACTGACAAACTCATAGACAAGGTTTTGAGTATTTACCAGAGCAAAGACCTGATCTCCATTTATCATGAAGAGCATGAGGGCTTAGACGACTTTGATACTGTGCTGCTGAAGGCTCTAGTCAGGGCGGGTAAACAGCGCCTTTCCACTGATTCCGTCCCCAATACCGAGGAGCTGAGGTTGGCTGTGACCTGGAACAGAGTGGACATCGCCAAGAGTGAGCTCTTCGCTGGAAATATCCAGTGGAAGAATGAGGACTTGGAGGGCTTCATGACTGATGCTTTGGTGAACGACAAGCCCCAATTTGTACGTCTCTTTACCGAAAACGGGCTGAACATTCTGGACTATCTTACATACGCCCGTCTTGAGGAGCTGTATCGCTCAATCTCAGAAGGCTGTCTGGCCTACACGCTGCTACAGCGTTGCCTCGCAGAACGTCTGGGTGCTGTCAATACTGGCACTTTTCTCTCCGTTGCCGATTTTGTTAACCAGACCTCCAGCCCAGTCAAAGAACTGACACTTTATGAGGTGTCTCAGGTCCTACAGTACTTGCTAGGCGATGTGTGTCAGCCGTTCTATTATAAATGCCTGGGTCTGGAGGGTATTGTTTCCAAACGGAAAATCATCAAGAAACTGGCTACAATCTTGAAAGAAGATGCTGACTATCGGAAACATAGGTGTACACACCCATGGGCTTCACTCTTCATCTGGGCCGTGCTGCAGAACCGCAGTGAGATGGCTGTCTACTTCTGGGAAATGACCTCAGAGTCAGTGTTGAGTGCTCTGAGTGCTTGTAAGCTGCTGAGAGTTCTGTCCAGATTAGAGACTGAGAATGAGATGAAACTCTCCATGAAGGAACTGGCTCAGAGATTTGAGAACTTGGCCCATGATATATTCAGTAAGTGCTATGAGAGCAGTGAGAATCGCTCTTTCATTCTGCTGAAGAAAAAATCGGAGGTCTGGAAGGGCTCTACATGTCTGAAGATGGCCATGGAGGCGGATGCTCGCCTCTTCTTTAGTCATGACGGCGTGCAGagtctGCTGTCTCAGATCTGGTGGGGGGCTATGGACAGGAGCACCGAGGTATGGAAGCTCatcctcactctgtttatcccTCCTCTCTGCTACACCAACCTAATCTCTTTCACAGAGGTGGATGATGCAGATGAGGGGAAGCCTGATGAAGTCTCAGAGCGAAAGGACATAGACTGGCTCTATGCAGAAACCGTCTTCTCTTTCTCAGACATCAAACGCATTCAGGCAAAAGCAGAAGAGCCAACTCCTATTAGACAAAGCATAAAAGgtcaccCAGTGAGGCCAGTCCGTCCCAAGTTGCCTTTTGTATTTTCACGCTGGAGACAGTTCTGGTACGCACCGGTCACTGCCTTCCTTGGCAACGTGCTGATGTACTTCCTCTTCCTGCTTCTGTTTGCGTATGTGCTGTTGATGGACTTCAAGCCTCCACCCCCGAGGGGCCCGGCCTTCTGGGAGCTCCTGCTGTATTTCTGGGTGTTCACCATAGTGTGCGAGGAGATTCGAGAGACATTCTTTGTGGGCAGCATGACTTTTAAGCAGAGGATACGACAGTATGCTCAGGACATGTGGCACAAGTGTGACCTCATTGCCATCACCCTCTTCCTTATTGGCGTGTGCTGCAGGATGTTCAAGGAAACGTTTTGGTTAGGCCGTGCTGCCTTGTGTCTCGACTACATGGTGTTCACCCTCAGACTTATCCACATCTTCGCCATTCATAAGCAACTTGGGCCAAAAATCATCATAGTGGGCAAAATGATGAaagatgtctttttctttctgttcttccttGCTGTGTGGTTGTTGGCATATGGAGTGGCCAATCAGGCTCTGATCTACCCCTACGACACAAGTGTTGATAGGATACTTCGCCGTGTATTCTACAGgccatatttacacatatttggCCAAATTCCTGTGGAGAAAATAGACTctggaTTTAGTTGGGATATAAATTGCACAGACAATGCAACACTAGTTAACGCAGGTGCAGAACCATGTAGGGAAGCACATCATAACTGGCTTGTGGTCATCTTACTCATCATCTACCTTCTGGTCACCAACATCCTGCTCATTAACCTACTCATCGCCATGTTCAGTTACACCTTCACCAAGGTGCAAGATCGGAGTGACATATACTGGAAGTTCCAGCGCTATAACGTAATTGTTGGGTATCATTCTCGGCCATGCCTCGCTCCacccttcatcatcatctcccACTTCCACCTCTTCATCAAGCGGAACATCCGCAAGGTGCCTTCTGAGAAGGTGCACCAATTTGTTGTGGACTTAAAGGATAAAGCTAACAACCGGCTAATGACTTGGGAGAGCGTTCAGAAGGAGAACTTCTTGTCTGCTGAGGGAAAGAAGTTAAGAGGAAGTGACACGGAGAGGCTAAAGCGCATGTCTGTCAAagtGGATGGTGTTCTCAAACAGACAGCTGAGATCAGGGATGTGGATCGCAGATTAAGAGCACTTGAGTCTGAGATGGAATTCTGTTCATCTACACTTCTCTGGATGGCTGAAGCTCTCTCTCAGAGTGGTGTGCTAAAATCCAACAAGCCTCCTCCTACACATAAAGtaaagccATCCACACCGGAGATGTGAGAACGGTTCCCTCACCTTTCATCCCTCTTTTGccctctttctcttcatctcccacacacagacacacagtagtgtaaaaGGCAACGTATTTCTGTCATTCAGTCTATTTTATGAGAGTGTGGTAAAGTTGCTTCTGATAATTAGATTGGCCATCTTTGTCCTCTTCCTTGCATCTGTATTTATTAGTCCAAAGAAAAAGGTAAGATTGCAGAATAAGAGAATGGGGTCAAACTTAGGCAAAAGGACAGCAGAATAAAAGTTtctgatttcacacacacacacacacacacatatatgtatatgtatatacatactcTTCATTCAGACCACCCTTAATAAACAAGGGAGTCAGTTCTTACATTTTGTGGGAtcttatattttttgtgaacaattttaatttattttataaagactCAAAGCAAGAATAATCATTTAGTAGTAATCAGTAATGATTTAGTGCAAtgataaatgcaaaaataaatccCAAACACACATCTTAAAGGTGCTAGAGCTACAGAGAACCAGACAAAAACTTAAAGAACAAGTAGTTTGATAATTCCATGTGGTTTGCCAGTATTAGACTACAAGTCAAGCTGAAAATAACAACGAACTTCAGTGTTATCTCATTCTACGTCAGTTAACTTTAAACAAATACGGCTAATGACATGCAAATGTTCCAGCAATTAAAAGCATTGGGAGACATGCGTATACAGGGACTAATAAAGAACTCGGTTTTCATTGGACTGCAATACATGAGCCTGAGCCATTTCTGCGTCAAATTGTTGAGTAAAAAACTGTACTACAACAGTTAGCAGAAATGTGCATTAATGAGTATTTCAGGGTCTGtgatatatataatttgtataataactcatcatttaataaaaattaaacatacagtGGTGCTAAATTTTTCTTATTACAGTCTCACTAAATTTTTTCCTCTCAATTATCATTGCTGaaatacacagatcagccagaacattatgaccactgacaggtgaagtgaataatattgattatcttgttacaatagcacctgtcaagggttgagatatattgggcaggaaaacaggaaaaatgggcaagcgtaa

Function

GO: NA

KEGG:

id description
K04979 TRPM4; transient receptor potential cation channel subfamily M member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226700 lncRNA downstream 41672 5768528 ~ 5776020 (-) False LOC113527291
TU226688 lncRNA downstream 77493 5739978 ~ 5740199 (-) True G191490
TU226656 lncRNA downstream 128124 5688594 ~ 5689568 (-) True G191468
TU226652 lncRNA downstream 147939 5667884 ~ 5669753 (-) True G191464
TU226650 lncRNA downstream 149846 5666173 ~ 5667846 (-) True G191463
TU226871 lncRNA upstream 86108 5935539 ~ 5938163 (-) True LOC113527731
TU226870 lncRNA upstream 86222 5935653 ~ 5938163 (-) False LOC113527731
TU226872 lncRNA upstream 86222 5935653 ~ 5938213 (-) False LOC113527731
TU226873 lncRNA upstream 86222 5935653 ~ 5938163 (-) False LOC113527731
XR_003402884.2 lncRNA upstream 86425 5935856 ~ 5938179 (-) False LOC113527731
XM_026914891.2 mRNA downstream 3220 5807820 ~ 5814472 (-) True LOC113527266
XM_034309355.1 mRNA downstream 26422 5770875 ~ 5791270 (-) True LOC113527291
XM_034309608.1 mRNA downstream 108804 5692120 ~ 5708888 (-) False zgc:92313
XM_034309034.1 mRNA upstream 17510 5866941 ~ 5882707 (-) True irf3
XM_026914580.2 mRNA upstream 36074 5885505 ~ 5903485 (-) True prr12a
XM_034309639.1 mRNA upstream 61003 5910434 ~ 5932525 (-) False si:ch211-255p10.4
XM_034309638.1 mRNA upstream 61003 5910434 ~ 5932525 (-) True si:ch211-255p10.4
XM_034309641.1 mRNA upstream 61003 5910434 ~ 5932524 (-) False si:ch211-255p10.4
TU226699 other downstream 41672 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 203738 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 344222 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 515487 5302113 ~ 5302205 (-) True trnai-uau_5
TU226226 other downstream 754297 5059527 ~ 5063395 (-) False LOC113527048
XR_004579320.1 other upstream 698640 6548071 ~ 6594390 (-) False itga3b
trnap-agg_9 other upstream 2608896 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 2625828 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 2998231 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 3227358 9076789 ~ 9076860 (-) True trnaa-ugc_6

Expression Profile