RNA id: XM_026914925.2



Basic Information


Item Value
RNA id XM_026914925.2
length 1086
RNA type mRNA
GC content 0.51
exon number 1
gene id LOC113527290
representative True

Chromosome Information


Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8301334 ~ 8302419 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


ATGGCGCTCTTGGTCCTGAGTCGAAGAAGGAACAGACTAGCTGGTGCCTCCACTACCAGAAAGCTGCTGATAAACTTGGCTGTGTGTGAcatgatggtggtgtgtgtgtgcatgcctgtgAACTTGGGTCACCAGGTGTACAATGCTTGGGTGTTTGGGGACTTGTTGTGTCGCGCGGTGCCGTTCGTTCAGGCCGTTTCCGTGTCCGCGAGTGTCTTGAGCCTGGCTGTCATAAGCTTGAACCGGTACTACAACGTTCACAGCCCACTACGTGCACGATCCTTCTTCACCGGTAGGAAGATTTGTGCGATGATAGCCATGGTGTGGACGGTGTCGTCCGGGCTGTGTGCTCCGTTGGTCTTTATGAATGAGACCAAGATGCTTTCCTTGACAATGGATGGCTCACACGTGATAACGGTGTGTGTCGAGGCCTGGTCTAAAGCACGACTGCGCCTAGGCTACAACTTTTTACTTTTCTGCGCCCTGTATGGCTTTCCAGTCCTCTTCAACCTCATCATATGTTTTCTCACTACCTGGAAACTATGGAGTGCAGATGACCAGTTTAGTGAAGCTGCCATGTCGAGCTCAACCCGGTCAGCAGCGCGGCTGAAGTCGCGCAAGAAAATAGCCAAGATGGTGCTAGCCCTGGTGGTGCTTTTTACCTTCTCCTGGCTTCCTCTCTATGTAGTGGATATCTGGATTGACTTCAACATGCCAGGCTCTTTGGACAGAGAAGTTCTGGGCCACGTTGAGCACAGTTGGGTGTTGCAGAGCCGACCTTTCGCGCAGTGGCTTGGCCTCACCAACTCAGCACTCAACCCGCTCTGCTACTGCTTTGTGGGCGACCTGTACAGGTCTGCAAAAAGGTTCAGGAAGAGCTACAGAGAGAAAATGGCCTCTGTTTTTAACGCGTCTCAGAGACCATCTTCCTCCGTGAACTCTGCCCTCAAACTTCAGTCGTATGCGTCATCCACAAAATACAGCACTGGAAAGCAGAGATGGGCAGGCTGCTATATTTTCAGTAACAGATTAAACAGAAGCAAAAGCATGTCTgccataagtgtgtgtgagactgtatTTGGTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU228139 lncRNA downstream 174777 8071922 ~ 8126557 (-) True G192685
TU228135 lncRNA downstream 205977 8090685 ~ 8095357 (-) True G192681
TU228096 lncRNA downstream 324180 7974214 ~ 7977154 (-) True G192665
TU228097 lncRNA downstream 324269 7974214 ~ 7977065 (-) False G192665
TU228034 lncRNA downstream 423635 7874766 ~ 7877699 (-) True G192611
TU228380 lncRNA upstream 76808 8379227 ~ 8383599 (-) True G192881
TU228447 lncRNA upstream 126885 8429304 ~ 8436084 (-) True G192937
TU228459 lncRNA upstream 149778 8452197 ~ 8455303 (-) True G192948
TU228456 lncRNA upstream 161890 8464309 ~ 8541281 (-) True G192945
TU228465 lncRNA upstream 178001 8480420 ~ 8513470 (-) True G192953
XM_026914611.2 mRNA downstream 18472 8269591 ~ 8282862 (-) True adam8b
XM_026915590.2 mRNA downstream 40224 8207944 ~ 8261110 (-) False exoc6
XM_026915273.2 mRNA upstream 137768 8440187 ~ 8445679 (-) True crym
XM_026915448.2 mRNA upstream 145508 8447927 ~ 8450462 (-) True snu13b
XM_026914607.2 mRNA upstream 212142 8514561 ~ 8521374 (-) True si:ch1073-272o11.3
XM_026914608.2 mRNA upstream 212142 8514561 ~ 8519798 (-) False si:ch1073-272o11.3
XM_026915557.2 mRNA upstream 372310 8674729 ~ 8678396 (-) True wfikkn2b
XR_004579320.1 other downstream 1706944 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 2525314 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 2687380 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 2827864 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 2999129 5302113 ~ 5302205 (-) True trnai-uau_5
trnap-agg_9 other upstream 155908 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 172840 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 545243 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 774370 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 774699 9077118 ~ 9077199 (-) True trnal-uag_4

Expression Profile