RNA id: XM_026914928.2


Basic Information

Item Value
RNA id XM_026914928.2
length 5403
RNA type mRNA
GC content 0.49
exon number 22
gene id si:ch211-119c20.2
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 22037972 ~ 22089270 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTAATAGAATAGTGATGaattcatttctctctgttgttAGTGCAGCAGGTTGTGGTTTAGGACTTAGCTTCAGTTTCTGATGTCTGCAGTCTTCAGGTTTAAGAGCTTGTTTCTGTGCAGACTTGTGTTTGGAGTTGCAGGAGAATTTATTTGTGGGCGGAGCCAAGCGGCAGGCACGAGCGCGCGCTTCTGGGCTGACTCGCGAGCGCTCGGTGGAGTGTCAAACACGTTCACGCGCTACCGGAATCCGCTTCCGTCTTCTGTATGAGGAAAGACAAGGCTGAGATCACGAGACTGGATTAATgccgtattattattattatcattattattctgCTTTGTGCTTATAAGACTGCGTTAACTTGgaTCTTCAGCAAGTTTCAGGATAAAGGATGGTACTTACTACAGATAAACAGGATGGATGAAGCTGAGGCTCTTGCTTATGATGTTTAATACGTCTGAATAAGAAGAACCAGACCATACAGATTGCCTCTGTTAAAGGAATTAACAGCTAACGTGATGTTTGGAAAGCAAAGAGATGCAGCATGTTGTGGAGAAACGAGATTACGCCTGTCTGAAGTGAGACTATAACTCGTCAGGGTTGGACAGCAGCCATGGGGAAAGAGCAGGACCTCCTGTTGGCTGTGAAGAATGGAGATCTTCTCGCTGCTCATAAACTCCTTGCCAAGATCAAGGCCAACCGAAATAAGTTACTCAGCTCGACAAAGAAACTGAACATCAACTACCAGGACACAGATGGGTTTTCGGCTCTGCATCATGCGGCCCTCACAGGCACCACGGACCTGCTGTCTCTGCTTCTGGACGCCCAGGCTACAGTAGACATCAAGGACCGCAATGGAATGCGACCGCTTCACTATGCTGCATGGCAAGGAAAAGCCGACTCTGTCCTGATGTTGCTGAGAGCTGGAGCTTCTGTTAACGGAGCATCACAGGATGGACAAATCCCTCTGCACCTGGCTGCTCAGTATGGACACTACGATGTGTCTGAGATGCTTCTCCAGCACCAGTCCAACACCTGTATGGTCAACAAGGCCAAGAAGACCCCACTGGACCTGGCCTGTGAGTTTGGCAGACTAAAGgtggtgCAGCTGCTGTTGAGCAGTAACATGGTGGTGGCTCTACTGGAGGGCAACGGGAGAGATAACACACCCCTACACCTCGCCGCTCGCAACGGCCACAAGGACATCATCAGGCTGCTCCTGAAAGCGGGAATTGATATCAACAGAACCACCAAAGCTGGAACGGCGCTTCACGAGGCTGCGCTCTACGGCAAAACCGACGTCGTCAAGCTGCTATTGGACGCTGGGATCGATGTGAACATCCGGAACACGTATAACCAAACGGCCCTGGACATCGTGAACCAGTTCACCACGTCCCACGCCAGCAAAGACATCAAACAACTGCTCCGAGCCTCAGGAGCAATGCAGGTGAGAGCTCTAAAGGACTACTGGAACCTCCACGACCCTACAGCTCTGAACATACGTGCTGGAGACGTCATCATGGTTTTGGAGCAGCACGTAGACGGACGTTGGAAAGGACACATCCATGACAGTCAGAGAGGCATCGACCGTGTGGGATACTTCCCTCCGTCCATCGTGGAGGTCATAACCCGGAGATCAGGGGGCTTCCTCTCTCGTCAGGCCTCACTGCCCAGCCAAAGACATCACACCCTAGCCAGAGCTCCGCCCCCCTCCAGCCCACGCCCCGCCCCCCATACCGACGACTCTTACACCCTGTATTCACCCACTCATCCCAACTCACCACGCCAAAACGGCCTGAACCAGCAGCCAGgTTCTCCTCCCGACAGTCCCAGTGCCTTGTGTATTCCAGCTAGTTCCAAAGAGCCAGAGGATATTTGGGTCCTCAGGAGCTCTTTCACTGgagacAGGAACAGTGTTGGGAGCGCAGGCAGTGTAGGGAGCAGTCGTAGCGCTGGCAGTGGACAGAGCACTGAGGGCAactttacccacaatgcacagcATCACACCAGCACCACTGCACAGGACATCAACAAGgTCTTGCCCTCTGGTGGTGAAGTGGTAGAACAGCATGGCCTGGCTTCTGATGTCATCAACCCTGAGCCTCCAGGTCGCAGGCCGGATCAGAACAGCTCCAGAGCTGGTGAACCAGCTGTCAGGCCACATGTTGTCCGTCCAGAGCAGTTACTGGAGGGCAAGGATGCCGAAGCTATCTTCCAGTGGCTGCGTGAGTTTCATCTGGAGCAGTACACTACAAACTTCCTCACAGCTGGTTACGATGTGCCTACCATTAGCAGAATGACCCCTGAGGATCTCACAGCCATTGGTGTGACTAAGCCAGGTCATCGCAAGAAGATCTCCACTGAGATCAGCAAACTGAACATCCCAGAGTGGCTACCAGACTACATTCCCGCTGACATCGGTGAATGGCTTGGTACCATTGGACTTGCTCAGTACCAGAAAAGGCTAGCAGAGAATGGCTACGACTCCATTAACATTGTGCGAGACATTACATGGGAGGATCTGCAGGAAATTGGCATCAATCAGCTGGGCCACCAGAAAAAGATGATGCTTGCAGTAAAGAAACTTTGTGATATGCAAAAGGCTTTGAGGAACCAAGCAGAGGGCAATGGGACACTGCAGAGAAGGAGACACCCTCCCACCCTGGAGCTGGTGGCTATCGAATCGGCCGACAGTGCTGATGGCCCTTCCTCACCACTCTCACCCAAGATGCTCACCTTCCAGGATAGTGAGCTAAGCACTGAGCTGCAGAATGCTATGATTCAGAGTGGCTATGGTGGCTGCCCAGAAGGGTTTGGTGCTGTGCTAAGTGGAACAACGACCGTGTCTCTGAGTCAAGAGAGTATCAGTACACGCTCACGGGGCACTGGGCACTCACAGGAATGGCCTTTGACTTCTGTAACTCCCCACAGCCATTCAAATGAAAGTTTGGGCAGCTCAGACTGCAGTGCCCTCAAGGATTACCCAGTTCTGCCTGCCAAGATGGCACCACCATTACCTCTAAAGAAGCAGCAGTCCACACGTGGCAGCCCACCAATAACACCAAGCAAGACGGCTCGATTAGCCTACCCTGCTGCCAACCCTGGAATCTCCACAAAACCAGATGGTTCCTCCATCCAGAGAGGATTTAACTACCTCCAAAACATCAATTCAGATCAGTCTTGCACTGCTCAATCCAGACCCAGTGGTGAGAACCGGCATCCAAAGAAGCGCACACAAAGCCTGTCACGGTATGCCCTCTCTGATGGGGaaggagaagaaaatgaaacaccAGTATTACCACCCAACCTGGTCTCGTATGCTACACTCACACGCAAGCCTGGTCGTGGTCAAACAATTGCTGCTGCCAATGATAGGCAGGTGGGTCGGACTCAATCCTTTGTGATACGTGCCAAGAGGAAGGGACCACCCCCACCTCCTCCCAAGCGGCTGAGCTCTGCCTCGAGTGCAGGAAATAGTGGTGGAGTGGAAATCGAGAGTGCTGGGAGTGTTCGTATCATTGCAGCCAGGCTGGAAAAGAGTGGAGAAAGCCCCAGTAAGACCCCCAGCAGCCCCTCATTCAAATCTCCCTCACCTGCCACCCAATTTAAAACTATAAGCATTCAGAGAGAGACAACCAGTGAAGTCTCTCTAAGTCAAACTGGTCATGCAGAGCTCAGTGGAGTAAAACCTGAGGAGCAAGACGTGAAGCTTCAGCCAAGCCAAGAGCATACACCTGCTATGTCACTTCAGGGAACTTTGTGTGAAAGCATTCCATTTGCTCAAGAGGGCAAAGGGACCATAAAGCAACGGCCAAGAATGGAAGTGGCTAAAATGGACACTGAAGTCAGCTTCCAACCACTGAAACCTGCTCAGCTGCCTAAATCATCCATAAAATTACCAGAGTTCAATCTGAAGGAGTCAGACACTGTCAAGAGGAGGCATAAACCCAGAGAAAAGGAACTGCAGATCACCAGTCAGGACACACTCCCAGGAAGGGAGAGTTCCTCTGAGGCTGAGAAGATCTCATTCTACATGCCAAATGGTGGACCAATAGGGAATCTCTTTCCACAGAAACCTCCAACACCCTGCAAACCAACACGGCATTCCGCCGCAGCCCCATTGGTTGTAGGTGGACCTCCTCATATTGTGCCAACCAGGATGGGGCAGGACATTGCCTTCACTGTGTCCTCTCCAATAAGAAGAGAGTGTCCAACTATCAGTGGACCCCAGGACCAAAAACAAGATGAATTTGTCCACCACAGAATAGAGCAGACCAGCACTTCCCTGGTGGCAGCTCTTGAAGTGGTGGAAAGGAATTTAGCTCAGAAGGATCAGACTGACAGTGGAGTTTACACTGTGAGATCAGCGGGTAACATTCTGGATGACATCGGGAACATGTTTGATGATCTTGCTGACCAGCTGAATGCCATGTTGGATTGACCCCATTCTTTCATATTGTACGATTTGTGCACCATCTTTGGGGGGACAGTCTTTTTGACAGATCTCTAGAAAATCTTCAGGTCCCTCCAGTTACTGCTTCTGAGTGATGCTTTCCTTCTGGATGGTCAATAAATGACTGGATTCAAGATGCCATGCAGCTATAGACTGTGCACTTGCAATTGGAGAAGAGAGACTGAGATGAGAGACCCATCAGAGGTGAGCTTAGTTGCTCTGTTGGCTCACTCAGACAGGGTGTGGTCATTTTGCTCCTGCCAGAACTTCATAGCACTTACTGTTTACTGTGTCCCAGATTTGTGAGGAGaggttttcatttcctgttgcaCACAGGGAAAAAGCTAGTGTCTCATTTCTGCTTTATTCAGGCCCTAAAGTGCACATCACATCATTTGTTATACTgctgtataacagcatgattgcTACTActtttatgtgtgtttaaagaTTGCTAGAGTCTTCTCTGATGAAAGTACCATATTTTCCAGACAATAATTCACTTCAGAATACTACCATCCTTCCAAACAAATTCATTACATAGCAGTGTTTAATGCAAAAACCTTCTAATTTACTAAGTAGCTTTTGTTTGTCTGATCACTGCTGTTATGATGATACTCATTTTCTCTAACACTGCTATGTGATTTTCACTGTTATGTTGGTGGTAAACTAAAGGCAGTGTAACTGCTTATAACCATCCATAACTACTGtaaaaacactaacaaatgGGTAAACTCCCATAAGAGCCTAAAAAGAACATCATAAATACAGTACAAATTGTCACACTACTGTCATTGATGTCATACAGAAAAATGAAGCGTACTGGTACAGCAAAAACTTTAACAAAAGGGCAAATCATCATAATTGCTGGCTTACCTTGCCTGCcataaaaatgtacacacacatacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237327 lncRNA upstream 11491 22013806 ~ 22026481 (+) True LOC113527202
TU237320 lncRNA upstream 38080 21999686 ~ 21999892 (+) True G200569
TU237312 lncRNA upstream 49218 21988186 ~ 21988754 (+) True G200561
TU237311 lncRNA upstream 50103 21987520 ~ 21987869 (+) True G200560
TU237310 lncRNA upstream 50971 21986362 ~ 21987001 (+) True G200559
TU237575 lncRNA downstream 25136 22114406 ~ 22114822 (+) True G200779
TU237582 lncRNA downstream 34963 22124233 ~ 22242312 (+) True G200784
TU237612 lncRNA downstream 258620 22347890 ~ 22348118 (+) True G200807
TU237831 lncRNA downstream 777638 22866908 ~ 22868838 (+) True G201019
TU237911 lncRNA downstream 1014014 23103284 ~ 23103499 (+) True G201093
XM_026914805.2 mRNA upstream 2347 22029089 ~ 22035625 (+) True LOC113527221
XM_034309366.1 mRNA upstream 12278 22014076 ~ 22025694 (+) False LOC113527202
XM_026915256.2 mRNA upstream 25668 22008511 ~ 22012304 (+) True srsf2a
XM_026915255.2 mRNA upstream 26120 22008511 ~ 22011852 (+) False srsf2a
XM_026914657.2 mRNA upstream 71225 21961174 ~ 21966747 (+) True nat9
XM_026915616.2 mRNA downstream 35066 22124336 ~ 22126646 (+) True LOC113527624
XM_026915642.2 mRNA downstream 112231 22201501 ~ 22204029 (+) True LOC113527641
XM_034309600.1 mRNA downstream 151235 22240505 ~ 22242775 (+) True LOC117598678
XM_026914735.2 mRNA downstream 419148 22508418 ~ 22701836 (+) True ca10a
XM_026915534.2 mRNA downstream 708872 22798142 ~ 22802638 (+) False mrpl27
XR_003402874.2 other upstream 25668 22008511 ~ 22012304 (+) False srsf2a
TU237322 other upstream 34698 22002824 ~ 22003274 (+) True G200571
XR_004579324.1 other upstream 2471288 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 3225710 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU237829 other downstream 708911 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 1116396 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 1234803 23324073 ~ 23329571 (+) True G201214
TU238026 other downstream 1268241 23357511 ~ 23398660 (+) False polr2a
TU238950 other downstream 2292517 24381787 ~ 24382287 (+) True G201962

Expression Profile