RNA id: XM_026914934.2


Basic Information

Item Value
RNA id XM_026914934.2
length 3200
RNA type mRNA
GC content 0.43
exon number 5
gene id phyhiplb
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 7526588 ~ 7547407 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGAAGGGAGTAAGGCGAGCCGCTCAGTGCAGGATCTGCTGCCGGGATATCATCAGTGAGAAGAAATGGAGGTGCCACGCGTGGCTCGCAGTGTGAGCAGCCCCACGAGCCCGTGCGAGGACGTGATGAAGAACCTGAGCTTGGACGCGATCCAGCTTTGTGACAGAGAAGGAAATAAGTCCCAGGACAGTGGCATTGCAGAGATGGAGGAGCTCCCTGTTCCTCAGCACATTAAAATCAGCAACATCACTTGTGACTCTTTCAAGATCTGCTGGGACATGGATTCCAGGGTCAAGGAGCGCATCACACACTACTTTATTGACCTTAAcaagaaagagaacaagaatGCCAACAAGTTCAAGCATAAGGATGTACCCACTAAGCTGGTAGCAAAGGCAGTGCCTCTGCCCATGACAGTGAGAGGCCACTGGTTTCTGAGCCCCCGCACAGAGTACACTGTAGCCGTCCAAACAGCATCTaaacagagtgacagagactACGCCGTCTCCGAGTGGAGTGAGGTTGTGGAGTTCTGCACAGCCGATTACTCCACGGTCCATCTCACACAGCTGCTGGAGAAAGCGGAGGCTATCGCAGGCAGAATGTTGCCATTCTCTGTGTTCTATCGCAACCAGAACAAAGAGTACTTTGACCATGCAAGGGAGGCGCAGAAAAACAAGATGCTGCCATCGGTGAAGGACAACAGCGGCAGCCACGGCTCACCCATTAGTGGCAAGCTGGAAGGTATCTTCTTCAGCTGTAACACCGAGTTCAATACTGGGGCTCCACCGCAGGACTCACCGTATGGCCGCTTCCGCTTCCAAGTGCCAGCCGACGCTCTCTTCAACCACAACACCAACCTGTACTTCGCTGATTTCTACTGCATGTACACGGCATATCACTACGTGATCCTGGTGCTGGCACCGCGTGGCTCTCCAGGTGATGAATTCTGCAAGCAGAGGCTCCCCTTGCTGGATATCTCCAACAACCGGTTTCTGACATGTGCTGAGGACGAAGAGGGGTGCCTTTCTTTCCGCCATGCGCAGGACATCATCCTCGAGGTGATTTATACAGACCCGATGGACTTGAGCCTGGGTACGGTGGCTGAGATCAGTGGGCACCAGCTCATGAGCCTGTCTACGATCAACGCCAAGAAGGACCCCAGCTGCAAGACCTGTAACATCAGCGTTGGCCGCTAAATCCCTGTTCAAGCAACTcttattgttctgttctgttttcctgttttctttccttggtgTCTTTTCTTTAACTCTCCTTTAATAACCCTTTAGGAGTCTCAAGGCTCCTTGACAGCATGTGTCTCTCAGCTTTTTACCAAACACTCCTCTCTTATTGAGTTAGACTATAATGTAGCCCTATTTTTCTATCTATGTTCAGAGGCGTCAGTGGGACTATAATATGTCTGtcaaaaaagtgacattttctCCTTTAATTCTTATTGGCTGTGAAACTTTAAACCGTGTTTTAGAGTTACAATGTCATATTTTGCCAAAGGTGACAACATAAAGTAGCATACTGGTCAAATTGATAATGTAgctggatatactgtataacaagGCTATAtaagtgtgtatttatattacacagTATTTGGATCATTCTAAAGAGCATAGTAGACATCGCTGCAGCATGATTCTGAAATTGAAAAACGATGACATCAGCACTTCTTTGATAGCTGTTCTGCAGTGTTTCATGTTATTTATTCTAAACTAAAACCTATTATACTGTGTTTGACACATAATAAACATGCCAAGTagtagaaatagaaaaatatttattttttaaccagTGTATAGAAAACGGACGGAACCAGAAGTGCACAATACTGGGACTTTGGGACAAAAAATGGATGCACACTAGAACAGAAAGAATTTCTCAAAATCAAATTTGCACAAATCTACTGCGTAAACCAATGCAAAATTAACATGCACTAAAAGCTGTCATTCAAATGGCGAAATAGTCATTGTGGCTGTGTACGTCAAATTCAGTCTGGAACACAGCAAACATGACACTGAACAAACCACACTTGATTGTAGAAGATCTCAACAATTCGAAGTCGGCTGGCATGCAAGACACAAAACACGATTGTAATAAGTCCTTGCAGTTGAAACGGCAAAACAAGATTGGTAATATCTGTATTGATTGTTGAACAGGAAttcaaggcttttttttcttttgagtgtgttacacttTCAGACCATAAAAAGGACCATTGTGCTTCATGGTAGAgcatagttattttttttatatatttatcttttaaaaaaaaatctttgtcaGTGTCATTCTGCCTGTCCTTCAGGAGGCCTCTTAATGTGTCACAgtcattcagttcatttcatttttgtgaaaaaagtaAGCGTAATAGAGGGACACATTCACAATAGGTCACAATAGTTCACATTGTATAACATCAGTTGCCATTAATACAAGCATTTGTGTGCTTCAGCAGCTGGTGAGTTTGCATATGATTATAAATCTAAGTGCTCTGGGTTTTAGCATAAAAGTTTGGCGTTTGCTCACGACAAAGCCCCCGTCTTGAACCCTGAGCATCATGGTCCGATCGTCTGAGAGCACACTGTCATTTTGTTTCAAATTACATCAGAATGACAAAAAACTCAGAACAAGAAACCAAGAAAATTGCATATTGATTCAGGCTTTggttaacaaaaaaacatctcttcaaaaaacaatataaagtgccatatttcatcatttcttttcGTCTTTAAGACACACATGATTTGTCAGTCTCCGCTGAGTTTGGAATGAAGAATGAGCACAAAACAGAGATCAGTATTTACACGGTACGTCATGCAGTAGCCAcgtaaggctttttttttttcttagagttAGATCAAACCCTGTGTCTGGGAGGTCTGGGCAGCTCAACGTAGAATCATTGTTAAAGTGCATTGTAGTGTTATTATGGCACGAGCATGTAATATGTAAGCAAAAACATGGTTTGGTCCAAATGTCTAGATCTGTTTTGAAAGGCAAaccaggatatatatatattccttgAATAGTCTATGTGGTTTCCTGTTTGCTAAGCAGAACCTCCAGCAAGCGCAGTTTGGCTTTCAGGCTTTTGTACTCTTGATATTCTTCTGTCATGGGAATCCGGTCGTCCTTTTGTGCAGTCCTTGTGTGATTTgagagcagaaaaagaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227775 lncRNA upstream 51584 7474437 ~ 7475004 (+) True G192422
TU227745 lncRNA upstream 126960 7399343 ~ 7399628 (+) True G192394
TU227373 lncRNA upstream 740992 6778164 ~ 6785596 (+) True G192043
TU227359 lncRNA upstream 798197 6725985 ~ 6728391 (+) True LOC113527389
TU227354 lncRNA upstream 829618 6696732 ~ 6696970 (+) True G192029
TU228011 lncRNA downstream 391634 7939041 ~ 7939584 (+) True G192591
TU228075 lncRNA downstream 521736 8069143 ~ 8071592 (+) True G192650
TU228069 lncRNA downstream 579366 8126773 ~ 8141060 (+) True G192644
XR_004579326.1 lncRNA downstream 711807 8259214 ~ 8261423 (+) True LOC117598703
TU228175 lncRNA downstream 721741 8269148 ~ 8270226 (+) True G192716
XM_034309453.1 mRNA upstream 12519 7447518 ~ 7514069 (+) True bicc1b
XM_034309438.1 mRNA upstream 90852 7428545 ~ 7435736 (+) False tfam
XM_026915648.2 mRNA upstream 502950 7021923 ~ 7023638 (+) True dkk1b
XM_026915240.2 mRNA upstream 510851 6862071 ~ 7015737 (+) False prkg1b
XM_026915239.2 mRNA upstream 510851 6869665 ~ 7015737 (+) True prkg1b
XM_034309630.1 mRNA downstream 224937 7772344 ~ 7795900 (+) False rhobtb1
XM_026915840.2 mRNA downstream 231923 7779330 ~ 7795900 (+) True rhobtb1
XM_034309631.1 mRNA downstream 234758 7782165 ~ 7795900 (+) False rhobtb1
XM_026915843.2 mRNA downstream 235349 7782756 ~ 7795900 (+) False rhobtb1
XM_034309632.1 mRNA downstream 238077 7785484 ~ 7795900 (+) False rhobtb1
TU227741 other upstream 90216 7428579 ~ 7436372 (+) True tfam
XR_003402840.2 other upstream 692331 6822740 ~ 6834257 (+) False asah2
trnap-cgg_7 other upstream 736643 6789874 ~ 6789945 (+) True trnap-cgg_7
trnap-ugg_20 other upstream 737822 6788695 ~ 6788766 (+) True trnap-ugg_20
trnap-agg_8 other upstream 738986 6787531 ~ 6787602 (+) True trnap-agg_8
TU227843 other downstream 58574 7605981 ~ 7628111 (+) True G192484
trnaa-ugc_7 other downstream 1560279 9107686 ~ 9107757 (+) True trnaa-ugc_7
trnal-aag_6 other downstream 1560445 9107852 ~ 9107933 (+) True trnal-aag_6
trnad-guc_4 other downstream 1717367 9264774 ~ 9264845 (+) True trnad-guc_4
trnad-guc_5 other downstream 1718856 9266263 ~ 9266334 (+) True trnad-guc_5

Expression Profile