RNA id: XM_026914941.2


Basic Information

Item Value
RNA id XM_026914941.2
length 4102
RNA type mRNA
GC content 0.51
exon number 8
gene id zeb1b
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 15695763 ~ 15755399 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggaaggagggaggggagGTGAAGGGGAGGTGTGGGGGGCCGAGAGGAGGTGACTCTCCGCCACGGCATTTACACACAGCGAAAGGATCATGGCGGATGGCCCCAGGTGTAAGCGCAGAAAGCAGGCGAACCCAAAGAGGACGAGCGtgaGTAACTACAGCCATGTACTGGAAGGCCAGTCAGACTCTGATGATGAAGATAAGCTCCATATCGTGGAGGAAGACGGGACCCCTGTGGATGGAGCTGATGGTGACAGCGTTGCCCACGACGATGATGCCAATGGCCCTGAGGACCGATGGGATGAAGtgaaagaggagtgtgtgtcagaggagGATGAGAGGAGTAGGGATGCTCTTGTTGAGGAAATGCTTCAGCAGGGAGACACGGCCGTCATCTTCCCGGAGGCACCGGAAGACGAACCACGCCAGGGAACACCGGAGACCAGTGGCCATGATGAgaatggcACACCAGACGCGTTTTCTCAGCTCCTCACCTGTCCCTACTGCTCTCGCGGCTACAAGCGCTACACGTCTCTGAAGGAGCACATAAAGTATAGACACGAGAAGAGCGAGGACAACTTCAGCTGCTCACTTTGCAGCTACACTTTCTCCCACCGCACACAGCTCGACCGACACATGAGCGCACACAAAGCAGGCAGAGACCAGCGGCATGTAACCCAAACAGGGGGTGGAGGAAACCGTAAGTTTAAGTGCACTGAATGTGGCAAAGCCTTCAAGTACAAACACCACCTGAAAGAACACCTGCGTATCCACAGTGGGGAGAAGCCATACGAGTGCCCCAACTGTAAAAAGCGTTTCTCTCACTCTGGCTCCTACAGTTCCCATATCAGCAGTAAGAAATGCATCGGCCTCATTTCCGTCAACGGCCGGCCACGACCCTCGCCAGCCACAGGAGGCACCAAAACCCCTCAGTGTCCTTCACCATCCCTGCCCTCCTCCCCCGCCACTGCCCGGACTCAGATCCAGGACAAACTGGACCATAGTAAACCCCTGCAGGAGCAGCTCCCGATCACACAGATTAAGTCTGAGCCATTGGACTATGAGTACAAGCCTGTGGTAGTTGCCCCGGCTGCCCCTGGAGGAGTAAACGGGGTTTTCCAAGGAGGGGCAGCAGCACCACTACAGGGGGCAGTGCAGGCTGTGGTCCTCCCCACTGTAGGACTGGTCTCCCCAATCAGCATTAATCTAGGGGATTTGCAGAACATGCTAAAGGTGGCAGTGGATGGGAATGTGATCAGGCAGGTGTTGGAGAATGCCCAGACCAAAGGCCAGCCTGCAAGCACCGGCAGAGTGGCTATTGCACAGGCTCCTCAGCAAGTCATCCAAGCCATCAGTCTTCCCATTGTTGACCAGGACGGTACCGCCAAGATCATAATCAACTATAGCCTTGACCCATCGCAGACTCAGGTAGCTCTGCAGAACTTGAAGAAAGAGCCAGTGGGGCAGAATACAGACTCCTGCAAGGCTGAACGACTACCTGAGGACCTGACGGTTAAAAGCAAGACAACCAGGGACAAAACCACCATCACTGTGGATGAAGAATGGCAGCAGGAGAAGGGCAAACTCTACAATCACACGACAAACAAACACTGtggcaaggaggaacaggaggttAACggaacacacttggaggaaaagCCTGAAGCAGATGTTGAACTGTGTCCTGGGCAGCCCCCACTGAAGAACCTTATGTCCTTGCTTAAGGCTTACTTTGCCTTAAACGCAGAACCTACCAAGGAGGAGCTGGCAAAGATATCCGAGTCAGTCAATCTCCCTACTGATATTGTCAGGAAGTGGTTTGAGAAGATGCAGAATGGGCAGATTCCAATGGAGGTCTCTACAGCCACACCCCAGACTAACGGGATAGACATTAATGGCActccggaggaaacccccaatcCGATGTCAGAGCAGGACAGCAAAAGGAAccaagaggaggaggaggagatggagctTCATAGCCCAGCAGAAGGCACTACAGCTGGGATAAGTGGAACAGAAAATGGCCCCACATCCCCTTTACCACTAAATCTATCTGCAGATGGGCCTGTGCCAGCCCAGACTGCGGAGGAAGGAGAGGGACCGCTTGATTTGTCTCTCCCAAAATCTGTAGCGGCAACAAATACAACCAGCGCTCACTCTGTTTACTCAGCTCAGGACGAGCCTCTGAACTTGGTTTGCACAAAGAAGGAAGTGCTCAGCAATGCAAGCACCAGCACTGCCATCTATGCCAGCCAAACAAGTGCCAATTCCCTGAACATTGTGACCACTCAACTGCCCACCCTCGTGGCTATCGCCAAGCAAGGCCCCGGGCAGTGCCTGCGCACCCTCACCACCACTAAACAGACCATCTTAATCCCACAGCTGGCCTACACCTACACCACTACAGCCTCCAGCCCAGCAGGGGGTGACACACCACAGAAGGCCATACTGCATGTCAATGGCGTCAAGGAGGAGAAGCAGGAGGCCGGTTCAGAGGTGGCTTCAGTGCTGGAGGAGCAGACAGACTCAGACTCTGGGCCGGtgaggaagaagatgaagaagactGAAAATGGCTTGTATGCCTGTGACCTGTGTGACAAAATCTTCCAGAAGAGCAGCTCGCTGCTTCGGCATAAATATGAACACACAGGTAAACGTCCTCACGAATGCGGGATCTGCAGCAAAGCTTTCAAACACAAGCACCACCTGATCGAGCACCTGCGTCTGCACTCGGGAGAAAAGCCGTACCAGTGTGACAAGTGCGGCAAGCGCTTCTCTCACTCCGGCTCCTACTCGCAGCACATGAACCACCGCTACTCATACTGTAAGAAGGAGGCACACGGCCAGAACCAGGTGCAGAGGGACGAAGAGGAGGAGAACCCCAACGAAGAGCAGCCTGGAGCAGCAAGCACCGCCGCCTCGCCCCCATCTCAGGTGGACTCGGATGAACGAGGGAGCAGCGCCAGGGAGGACGAGGAGAGCGAGGAGGAAGACGCGATGGGCTCGGGGAGCGTGGTGGACGAGGACGAAATTCAGGTGGTCAGGATCGGTGAGGAAGGAGGAGAGGATGAGGAAGACACCGGAGAGCAGTACAGGATGGAGGAGATGGACACAGGAAATGAGGAGGCGGTTAGGGAGAATGGAGGACATGAGGAGGGTACAGTGGAAAGTCaagaagagggagaagaagatggagagatgatgaAGGTCGTGGTGATGCaggatgatgaggaagatgaagagcagacagaaaacacagaagtgATGGACATGCAGGAAaacacaggagagaaaaaaaacgagAATGAAGGAGAAAATGTGAAGGAGGAGGGTGGAAATGAAGGAAACACACCCAGTGAAAATGGAGATGTGAAATGAAGAGAAACCACATCAGGGCTTTTCTCGCTCTTATTCTTTGCTACTTAGTTTTACAAAAACGTTACTAATTTGAACAAAGACTGCAGATGTGGCTGCTTCAAGAGGATTGCAGGAAATGgtgaaagaaggaaggaagagagcGAGAGCACAGGAGCTCTGCCATTGCATTTTATCCCACTACTGTGTATAAAACCCTTTGTGtgcctgattaaaaaaaactagtgTTTTTTCCACATAAGGACAATTTTCAGTGTTTATGGTTTGTATAAATACAaagtttaatgaaaaaaatgacacatatACAGACTGAAATCTAGACACGTTTTAGCTAATAACGTTTTATTACTAAAACACCGTGGGTTTCTTTTTATCAGTgttactaattttttttgtcactctTGTTTAAACCTTAAAAAAGCTGTACAGTTGGGAGAgatttctatacatttttattgcCAATGAACAAAACTCAGTATTTTATTGcatatgaaggaaaaaaaaaagatcctgtGCACTACCATGCTCCCAGTTTACTGATGAACACCTCTGTGGGCCTTGTTTAATGTCTACCTTTCAGTATTAATACTCTCGAGCTAACCCACGTGTCATGCTAGCCTACGCTAGCTCAAcatctgtctgttttgtttggAAATGGTCTGTGAGCCTTAAACGTAAGAAAAAAATGGGGGTGGTACACAATCCtagatccaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:2000145 regulation of cell motility biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007369 gastrulation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233452 lncRNA upstream 427023 15267299 ~ 15268740 (+) True G197174
TU232570 lncRNA upstream 1081106 14613088 ~ 14614657 (+) False G196387
TU232569 lncRNA upstream 1081106 14613289 ~ 14614657 (+) False G196387
TU232568 lncRNA upstream 1081303 14613088 ~ 14614460 (+) False G196387
TU233783 lncRNA downstream 98535 15853934 ~ 15856543 (+) True G197434
TU233857 lncRNA downstream 290904 16046303 ~ 16046505 (+) True G197498
TU233860 lncRNA downstream 294197 16049596 ~ 16049892 (+) True G197501
TU234038 lncRNA downstream 743036 16498435 ~ 16498661 (+) True G197659
TU234039 lncRNA downstream 743315 16498714 ~ 16498945 (+) True G197660
XM_026914901.2 mRNA upstream 80893 15605292 ~ 15614870 (+) True LOC113527272
XM_034309186.1 mRNA upstream 91267 15554630 ~ 15604496 (+) False svila
XM_026915585.2 mRNA downstream 1015838 16771237 ~ 16777328 (+) True ppa1a
XM_026915913.2 mRNA downstream 1022890 16778289 ~ 16783706 (+) True sar1aa
XM_026915914.2 mRNA downstream 1023593 16778992 ~ 16783706 (+) False sar1aa
XM_026915555.2 mRNA downstream 1100290 16855689 ~ 16863437 (+) False anapc16
XM_026915554.2 mRNA downstream 1100313 16855712 ~ 16863437 (+) False anapc16
XR_004579176.1 other upstream 2137250 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 2137334 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 3222024 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 4409495 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 5631137 10064545 ~ 10064626 (+) True trnal-aag_8
TU234137 other downstream 1100371 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 1821884 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 2399752 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 2686487 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 3050686 18806085 ~ 18812262 (+) True si:ch211-221j21.3

Expression Profile