RNA id: XM_034309314.1


Basic Information

Item Value
RNA id XM_034309314.1
length 2536
RNA type mRNA
GC content 0.50
exon number 13
gene id tcf7l2
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13483301 ~ 13559085 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcttCTCCACCAAAGCTCGCTTTTCCTTCCTcgcttttcaaactgctgtgttCGTCTGCTGCTTTCCTCCAGCCTCTCCCCCCCTCCCTACTTTCCTGCCCCTCTCTATTTATGAAAACGTCACTTCAAGTCCCTCCCTGTTTGAATCTCATTAGTTTCTTGTGTGTTTCTCCCTGTCAATAATCCCGAATCCAGACTCTCTCTATTTCCATCCCTCTCTAGCTGTCAATCAGCGCCGCCTTTGAACTGAAAACCACTCCGACCAACTTCAACTCACTCAATCCGAGCGCCTCGGCTCCGTCTACGGCTTCTTTTTCTGCCAAGATTccccttttttttagttttgtactAATCGCCAGTCCTTGGGAAACACCAGGGCAGACCCTAAACTCGAGCTCGGATTCGGGATCACAGAGATCAAGGGTTTAAAACTTTGTGTTTTGGCCCCCCAACACTGCTCGGGAGAAAATGCCGCAGCTGAACGGCGGTGGAGGGGACGATCTGGGTGCGAACGATGAAATGATTTCCTTCAAAGACGAAGGAGAACAGGAGGAGAAAATTTCAGAGAACTCCTCTGCAGAAAGGGATTTAGCAGATGTCAAATCTTCGCTCGTAAACGAGTCAGAAACGAATCAAAACAGCTCTTCGGATTCAGAGGCGGAAAGACGGCCTCCGCCTAGAGCCGAAACTTTCAGAGACAAAACAAGAGAAAGTTTAGAGGAGGCTGCGAAAAGGCAAGATGGAGGGCTGTTCAAGAGCCCCCCGTACCCGGGCTATCCATTTATAATGATCCCCGACCTGACCAGCCCCTACCTCTCCAACGGATCCCTCTCACCGACGGCGCGCACATATCTACAGATGAAATGGCCACTGCTAGATGTTCAAGCAGGAAGTCTTCAAAGTAGACAAGCACTTAAAGATGCCAGGTCCCCTTCTCCAGCACACATCGTTTCTAATAAGGTCCCGGTGGTACAGCACCCTCACCATGTGCACCCGCTTACGCCTCTGATCACCTACAGCAATGAACACTTCACGCCAGGGAACCCGCCTCCACACCTGCAGACAGACGTGGACCCCAAAACAGGAATCCCTAGGCCTCCACATCCTCCAGATATATCTCCATACTACCCTCTGTCTCCTGGCACTGTAGGCCAGATCCCCCATCCGCTAGGATGGTTAGTACCACAGCAAGGTCAACCGGTTTACCCAATCACAACGGGAGGTTTTAGACACCCCTACCCAACTGCCCTCACTGTCAACACATCCATGTCAAGTCTTCTCTCCTCCAGATTCCCTCCCCACATGGTGCCCCCACACCACAGTTTGCACACCACGGGCATCCCGCACCCTGCCATAGTCACGCCCAACGTCAAACAGGAGTCCTCCCACAGCGACATCAGCACGCTCAACAGCTCGAAACATCAGGACCAGAAAAAGGAGGATGAAAAGAAGAAGCCGCACATAAAGAAGCCTCTGAACGCATTCATGTTGTACATGAAGGAGATGAGGGCCAAAGTAGTGGCAGAATGCACGCTGAAAGAGAGCGCAGCTATCAATCAAATCCTGGGCCGAAGGTGGCATGCCCTGTCTCGAGAGGAGCAGGCCAAATACTACGAGTTGGCCAGGAAAGAACGACAGCTACACATGCAGCTCTACCCCGGCTGGTCAGCACGAGACAActatgctgctAACCAACaggggaaaaagaagaagagaaaaagggaaaagcaGCAGGCAGATGGCAATGATGCAAATACCCCTAAGAAGTGCCGTGCCTTGTTCGGGCTTGACCAACTCAGTTTATGGTGCAAACCCTGCAGGAGAAAAAAGAAGTGCATTCGCTACATTCAAGGTGAAGGCAGCTGTGTCAGTCCTCCCTCTTCGGATGGAAGCTTACTAGAGTCGCCCCCATCCTCCCCCTCCATGGTCCCCAATTCTCCGCCCTCGAAAGAGTCCAAACCACAGACTGAACAAATGCAACCTCTTTCACTGACTATGAAACCGGGCCCCCTGGTCTCATCctcacaccaccaacaccaccacctgTCCATGGCCCCGCCTCCGCCCTTAGCTCTGCTGGACAACTCAGGGGCAGGCAAAACCCCCGGCCCCGCCCACAATGGCTCCTTGGACCCTTCAGACGTGTCATCGTCTCGCCCCTCAGGCTCCGCCTCCTCCCAGCCTGCATCGGCGTGTCATTCCCATTCTCTGTTGCCCAGCTCTGCCCCAACGCAACCGCTTTCGCTCGTAACCAAGTCAATAGACTAGGCTAAACTAACTCCGATTTACCAGCTTTCAACTCCTCCCTTCTGTCTCCTGACACTTAtgttcttttcctctttttttgtttcatttttctgtcaCATATGGCTTTGGAAATTAGTTAATTCTTTTATCAAAGTTCATTGGTCAATATTTGACCTGTCATTATCTAAAATAAATGGaactattataataataatattgatgaTAAAGTAAAATGAGTTGTAGAATATAGCTATATAAGTCTGCCAAAATGTAagactttttcctttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231926 lncRNA upstream 16319 13466765 ~ 13466983 (+) True G195839
XR_003402861.2 lncRNA upstream 416680 13063864 ~ 13066622 (+) True LOC113527319
TU231613 lncRNA upstream 520059 12958940 ~ 12963243 (+) False ablim1b
TU231526 lncRNA upstream 638741 12844325 ~ 12844561 (+) True G195512
TU231306 lncRNA upstream 824979 12658105 ~ 12658323 (+) True G195301
TU231960 lncRNA downstream 59579 13618664 ~ 13618939 (+) True G195857
TU232108 lncRNA downstream 134630 13693715 ~ 13695761 (+) True G195994
TU232344 lncRNA downstream 454488 14013573 ~ 14016247 (+) False tha1
TU232348 lncRNA downstream 464502 14023587 ~ 14043932 (+) True G196202
TU232423 lncRNA downstream 567433 14126518 ~ 14127031 (+) True G196265
XM_026915485.2 mRNA upstream 21258 13355852 ~ 13462044 (+) True vti1a
XM_026915482.2 mRNA upstream 21258 13355852 ~ 13462044 (+) False vti1a
XM_026915486.2 mRNA upstream 21258 13355852 ~ 13462044 (+) False vti1a
XM_026915483.2 mRNA upstream 21258 13355852 ~ 13462044 (+) False vti1a
XM_026915210.2 mRNA upstream 132827 13341575 ~ 13350475 (+) True acsl5
XM_026915185.2 mRNA downstream 55114 13614199 ~ 13617164 (+) True crygmx
XM_026915199.2 mRNA downstream 81092 13640177 ~ 13655847 (+) True entpd1
XM_034309429.1 mRNA downstream 86555 13645640 ~ 13655847 (+) False entpd1
XM_026915200.2 mRNA downstream 88094 13647179 ~ 13655847 (+) False entpd1
XM_026914976.2 mRNA downstream 177363 13736448 ~ 13758533 (+) True psme4b
TU231182 other upstream 1009563 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 2197034 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 3418676 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 3848235 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 3969467 9513764 ~ 9513835 (+) True trnaq-cug_15
TU234137 other downstream 3296685 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 4018198 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 4596066 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 4882801 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 5247000 18806085 ~ 18812262 (+) True si:ch211-221j21.3

Expression Profile