RNA id: XM_034309274.1


Basic Information

Item Value
RNA id XM_034309274.1
length 2322
RNA type mRNA
GC content 0.50
exon number 11
gene id dhx32a
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 19830602 ~ 19841026 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCCTGCTAGGACATCTCGACAGATAGAGCAAGGACAAGAGAAGGGATTAATGATCACATGGTTCCACAGTGGTGTGCAGAGTTCTGTCTGTCAGCGCGGTACCAGCATGGTGTCGTGGTGTGTAGTCAGATCCAGAGACAGCAGGCTGTCGATTTGGCCCTGCGTGTAGCTGATGAGATGGATGTCAATATCGGCCATGAGGTGGGCTACAGCATTCCACTGGAGAACTGCTGCTCCACTGACACTGTTCTCAGGTACTGCACCGATGACGTGCTGCTGAGGGAGCTGATGTCCGACCCATTACTGGAGCATTATGGTGTGGTTGTGATCGATCAGGCCCATGAGCGCACCGTGAGCACAGACCTCCTAATGGCTCTGCTTCGGGAGGTGCTCCTGCAGCGTGCAGAGCTTCGGGTGGTCCTGCTATCCGTCACGCCAGCCTcgcacacactcctcacacacttcagcGATGCAGCTCACCTGCATGTGGAGGCACCATGCTCGCCTGAAGTTCTCCACAGCAGCCGAGGCAGTACGGAGAGCTTCTGTGCAGCTCTGAGACTCGTCCTGGAGGTGCACAGGACCAAAGAGCCCGGGGACATAGCTGTGTTCCTCGCCTCAGAGCAGgatgTGGACTGTGCCTGTAGTCTTCTGGCTAAAGAAGCATCCAGGTTGAGCAGTAATCTCGGAGAGCTGGTGCCAGTGGCAGTGTGCCCAGGCCACGCTGGGATCTGCCCACCAGTCACACAGCACCAAAAGAAAGGCAGGAAGGTCTTTCTGTCCTGCAGTCAGTCAGAAGACATGTTTTGGTCAGTGGACACGGTCAATTTTGTAATTGACACTGGTGTCGAGAAGAGATTTGTGTATAACCCACGGTTGAGAGCCAGCTCTGAGGTGATCAGACCCATCAGTAGATGTCGGGCAGAGATCCGTAAACAGCTGGCTGGATCAGCAGGGAAGTGTTTCTGCCTGTACCCTGAGGAGACAGAGCTCTGTACTGAGATTCCTGCTCGGATCCTAGAAGCAAACATCACCTCGGCTGTGCTCTTCCTCAAGAGGATGGAGGTGGCTGGAATCGGACGCTGTGACTTCATCAGCAGGCCAGATCCTGAAGGCTTAATGCAAGCTTTAGAAGAGCTGGATTATCTTGCAGCTTTGGATGATGATGGAAACCTTTCCGAGATCGGGATCATAATGTCTGAGTTCCCCTTAGACCCTCAGATGGCTAAAGCTCTGTTAGCGTCGTGCGAGTTTGATTGTGCCAGTGAAGTGTTAACCATTGCAGCCATGTTAGCAGCTCCAAGCTGCTTCCTAGAGCCCCCTGTTGGCATGGAAACAGAAGCGATGCTGTGTCACGTGAAGTTGTATCATCCAGAGGGAGACCACTTCACTCTGATCAACATCTACAACACTTACAAACGCAGCCAGCGAGAGCCATATTTCACACAGGAGAAGTGGTGTCAGGATTACTTTCTGTGCTGCGCAGCTCTGCAGACTGCAGACGCCATAAGGGCCGAGCTGACTGACATACTGAAGAGACTGGAGCTCCCGATCTCCGAGCCAGCCTTCGGCACCAAAACAAACACGCTCAATGTCAAGCGAGCACTACTGGCTGGGTTCTTCATGCAGATTGCTCGTGATGTGGACGGCTCTGGAAACTATTTCATGCTGAGCAATAAGCATGTGGCACAGCTTCACCGTCTTTCAGCTTATGGGGTCAAAGCGCACAAACTTGGCCTGCCTGAGTGGGTGCTGTTTCACGAGTTCACACTCTCCAACAGCAACTGCATCCGTACAGTCACACAAATCTCACCCAAAGTGTTCATCCAAGTGGCACCGCAGTATTTCTTCTACAACCTGCCGCCTAGTGAGTGTAAGGAGCTCCTGCAGCATATTTTGGACACCAAGGAGACTGGGAGTAAAAAGAGCAAACAGAAAACGCATCCTGTTATTAAAGAGACACCAAAAGGACAGGAGTCCCAGTCTTATGACAGATGTGTGATACAGTAATGTGAATGCACATGCAGTAGTCTGGACCCTAACCCTTGACCTGGGACAATTATGCCAAGTGTTGAATCTTTCAGCATTTATGTACTACTCAGCATAAAAAACAAGATCCTGGAGTGAAATGCTGAGAGTGGAAGATGATTCGATTCTAATGACCAGTCTCTGAAACTTGTACagatataatgtaaaatatttagtataGATAGACAATATTAAGAAATCTTCCctgagaaatgtatttttgttgttaatttcaAATGATATGCAGCACGGATTTCTGGCCAATAAACTTTCACGGAGGTGTACCCGGTAA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235663 lncRNA upstream 404007 19426380 ~ 19426595 (+) True G199051
XR_003402870.2 lncRNA upstream 515787 19309483 ~ 19314815 (+) True LOC113527366
TU235481 lncRNA upstream 1006041 18823633 ~ 18824561 (+) True G198901
TU235464 lncRNA upstream 1061912 18768393 ~ 18768690 (+) True G198886
TU235453 lncRNA upstream 1126903 18703475 ~ 18703699 (+) True G198876
TU235814 lncRNA downstream 35715 19876741 ~ 19885988 (+) True G199187
TU235845 lncRNA downstream 103218 19944244 ~ 19944466 (+) True G199216
TU235846 lncRNA downstream 109761 19950787 ~ 19953308 (+) True G199217
XR_004579191.1 lncRNA downstream 393789 20234815 ~ 20251474 (+) False LOC113527335
XR_003402864.2 lncRNA downstream 393790 20234816 ~ 20251474 (+) True LOC113527335
XM_026915906.2 mRNA upstream 4724 19727671 ~ 19825878 (+) True LOC113527774
XM_026915899.2 mRNA upstream 110848 19694398 ~ 19719754 (+) True c12h10orf90
XM_026915900.2 mRNA upstream 110848 19694398 ~ 19719754 (+) False c12h10orf90
XM_026915793.2 mRNA upstream 266404 19526642 ~ 19564198 (+) True LOC113527713
XM_026914625.2 mRNA upstream 457253 19370326 ~ 19373349 (+) True LOC113527107
XM_026914969.2 mRNA downstream 4484 19845510 ~ 19853750 (+) False wbp2
XM_026914968.2 mRNA downstream 4486 19845512 ~ 19853750 (+) True wbp2
XM_034309279.1 mRNA downstream 22286 19863312 ~ 19871403 (+) True mrpl38
XM_026915770.2 mRNA downstream 171681 20012707 ~ 20017504 (+) True gpx9
XM_034309636.1 mRNA downstream 345779 20186805 ~ 20200130 (+) False LOC113527727
XR_004579324.1 other upstream 263918 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 1018340 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 1019090 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 1320443 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 1671973 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 2161798 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 2167485 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 2957155 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 3364640 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 3483047 23324073 ~ 23329571 (+) True G201214

Expression Profile