RNA id: XM_026914968.2


Basic Information

Item Value
RNA id XM_026914968.2
length 1722
RNA type mRNA
GC content 0.47
exon number 8
gene id wbp2
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 19845510 ~ 19853750 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATGACGACACGCGGTGGGCGTTACGTGATCCGGAAGTGCAGGTGCACCgttacaaaacattttcaacTCCGGATTATTTGTCCGAGTTTCTGATCGCGCTGCAAGGATCTGTGTCGCACTATCTGTTGTGGATGTAAGAGAAAACAGTGGAGATAAAATGGCTTTAAACCAGAATCACTCGGAGGCAGGGGGagtcatcatcaacaacagtGAGAGTGTCTTGATGTCCTATGAGAATGTAGAGCTGACGTTCAGTGATGCAGACCGCTTGCCAGACCTGTTTAGGAAGAGCAGGAAAGGGAGTGTCTATCTCACACCATACAGGGTGATCTTTGTGACAAAGGGGAAAGAGGCTTTGCAGTCATTCATGATGCCGTTCTACCTGATGAAGGGCTGTGAGGTCAAACAACCTGTGCTCGGAGCCAACTACGTCAAGGGCACTGTCAGTGCTGAACCAGGAGGTGGTTGGGAGGGTTCTGCAACCTTCAAGCTGATCTTTGTCTCTGGTGGAGCTATTGAATTTGGACAGTACATGTTGCAGGTGGCTGCTCAGGCCTCCAGGGGGCAGCCCGTGACCCCTAATTTTAGCTGTCCATACATGGCTAACGGCGCGTACGCCTACCCACCTCCCCCTCCAGCTAATGGCATCTACTCCACTGGACCACCTCCCCCTGGTTATTCGTACCCTGCTCCTCCACCTCCAGGTGCATTCTATCCTAATCCTCCAGGTTTTGATGGCGCTGCAGCCTACGTTCCCCCTCCACCTTACTCCGCCTCACTGGCCCAAGCCCCTCTAGACCCTGACCTACCACGTACACCTGCAGcggAGGCTAAAGCAGCAGAGGCAGCAGCCAGTGCAAACACTGCTCCTCTTGCTCCTACTCACGTTTACCTGCCAGAGGACAAGCCACCACCTTACTCACCTCCTGAAGACAAGAAGAACCAGTAAATGTCACACCAGCAATCCCAAAGCCAGCCTTCAAACTCCTCTctcaagtctctctctctctctctctctttcacacacacacacacacacactccttctgagcagcatttcatttaattaactCTGCTATCCACACCAGGAGTCTATTCCAATGAGCAGTAAATTGTGGCAGTAttgaagaaagagaggaaaagcaaaaaaatgtcaTGAGTGAGAAGGAATTAAAGTTTTAGGGCTTATCAGGAGTCACAACAGTGATGACAGAGATTTCCTAACcttatattttgcatttgtaATGCATTGACGGCATATTGGACTTGATTTGTGAGTTTATTTTCTGGAGACGGCCTAGTTGGCCATGTTTCATAAGATACAGGGCCAGCACGTTTGGATTGTGATGAGAAATACTAATCATTGCTGTGTATTCGTTCAGGCATTATAATTTACAGCCTTCCCTGTATCTTGAATGTGTTCAACCTGAAGGCACCTTGGTGTACCTGTGGATCCGCTGTCCCTGTGCTACTCGTGTCTGTGTGGTTCTCTGGAGCATGACTCAAACTAACACTgcactttaccttttttttttgtcatgcatCAGTACAATCTGAGCAACATCTTGTCCACAAATACTTCTTGCTGTGAAACAGTTCTTACTTAATTTATTTGGATTATAAAATGTGTAACCATCCAAGCATGCTCTCAGCTCTGCTGTCTAACATAATGgacatattttattaaattaaacatgtaCCAGATTAAAGGTCTGGTTTA

Function

GO: NA

KEGG:

id description
K22524 WBP2; WW domain-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235663 lncRNA upstream 418917 19426380 ~ 19426595 (+) True G199051
XR_003402870.2 lncRNA upstream 530697 19309483 ~ 19314815 (+) True LOC113527366
TU235481 lncRNA upstream 1020951 18823633 ~ 18824561 (+) True G198901
TU235464 lncRNA upstream 1076822 18768393 ~ 18768690 (+) True G198886
TU235453 lncRNA upstream 1141813 18703475 ~ 18703699 (+) True G198876
TU235814 lncRNA downstream 22991 19876741 ~ 19885988 (+) True G199187
TU235845 lncRNA downstream 90494 19944244 ~ 19944466 (+) True G199216
TU235846 lncRNA downstream 97037 19950787 ~ 19953308 (+) True G199217
XR_004579191.1 lncRNA downstream 381065 20234815 ~ 20251474 (+) False LOC113527335
XR_003402864.2 lncRNA downstream 381066 20234816 ~ 20251474 (+) True LOC113527335
XM_034309274.1 mRNA upstream 4486 19830602 ~ 19841026 (+) False dhx32a
XM_026914965.2 mRNA upstream 4486 19830607 ~ 19841026 (+) True dhx32a
XM_026915906.2 mRNA upstream 19634 19727671 ~ 19825878 (+) True LOC113527774
XM_026915899.2 mRNA upstream 125758 19694398 ~ 19719754 (+) True c12h10orf90
XM_034309279.1 mRNA downstream 9562 19863312 ~ 19871403 (+) True mrpl38
XM_026915770.2 mRNA downstream 158957 20012707 ~ 20017504 (+) True gpx9
XM_034309636.1 mRNA downstream 333055 20186805 ~ 20200130 (+) False LOC113527727
XM_026915810.2 mRNA downstream 333074 20186824 ~ 20200272 (+) True LOC113527727
XM_034309635.1 mRNA downstream 333076 20186826 ~ 20200130 (+) False LOC113527727
XR_004579324.1 other upstream 278828 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 1033250 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 1034000 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 1335353 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 1686883 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 2149074 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 2154761 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 2944431 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 3351916 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 3470323 23324073 ~ 23329571 (+) True G201214

Expression Profile