RNA id: XM_026914970.2


Basic Information

Item Value
RNA id XM_026914970.2
length 4149
RNA type mRNA
GC content 0.41
exon number 30
gene id LOC113527309
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5626391 ~ 5665967 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAAATTTTCAAACACTGCTCATGTATCTACTTCCTCAACAGTCACTTTTTTGTGTCCACCACCCTGAACCTGATGACAGCATTGAAAATGGACTGGAATTTTGCAGTGTGCTTTTTCCTGATTTCTGTACCTCAGTCAGTGGTGACTTTCAACATTGATCCAAATTCATGGAAAGCGTTCACCCAAATCGAAAACACAGCCTTCGGCTACAAAGTGATAAGCCAGAAAACCTCGAGTTTGATTGTGAGTGATCCCTTAATCCAAAGTAGGAATGAAAGAGGCAAGGTGTACAGCTGTGCAGTTGCGCAAGAAAAATGCTCACCAGTACCAATAAATGTGCCCTCTGAGGCTGTCAACATGTCCCTTGGATTTTCAATGACTAAAGATCCCCAGTCTTCAAAGTTAGTGGTCTGTGGCCCAACCATTCCCAAGAACTGTAAGCATTTTACTGCATACAATGGCATGTGTTTTATATTGGATTCCAACAATAATCCATCAGCACCTATACCAAGTACTTTGAGAGATTGCCCACCTCCATCGCAAACAGACATTGCTTTCTTGTTGGATGGCTCTGGCAGTGTAAGCACTGGGGATTTTACTATAATGAAGAATTTTGTTATAAGCATGGTTAACGGATTAAAAGACAGGGATTTTCAGtttGCAGTTGCACAATATTCTTCTAAGTGtgaaatacacataaaattcaACAGCTTTTCAAGCACTGATCAAATACATTGGATCAATCAATTTAGGGGTGTTACCAATACTGCCAAAGCTATCAAAAAAGTTGTGTCTGAATTATTTACCCGTCAGGCAGGGGCCAGAGAAAATGCTAACAGAGTGTTGGTGGTCATCACTGATGGTGAATCACATGACCGGAGTGAACTGGGAACTGCTGCTTGGGAAGCAGAGCAGAAGAAAATTACTCGCTATGCTATCGGGGTCGGTAGTGCCTTTAACAGCCCATCAGCAGAGAATGAGTTGAGAACTATTGCATCGGATCCAGataataaacacatatttaAAGTGAATGACTTTTCTGTACTGAAGGAAATTCAAGACACACTGGAAGAGAATATCATTGCAATTGAGGgaacccaGACTTCAGGAGAATCCACAAGGATGGAATTTGCACAGGATGGCTTCAGTGCAGACTTTGTTTCATATGATAACATAATAATGAGTGCAGTTGGAGCGTTTCAGTGGAAAGGTGGTTATCAGAGGTACAATTACCGTGGAACACCTTTAGACTCCTTTCAGAAGGGCGACAGTAATGACAGTTATTTAGGTTATTCCATGACAGTAGCAAAAACATCCAGGGAGCTCTACTACATCATTCAGGGAGCTCCAAGAGATAAGCATATGGGGAAAGTGACCATATCAGGCAATGGAGTCTTTCAGACACTGGATTCTCCTgagCCTCAGATTGGTGCCTATTATGGTGCTGAGTTATGTGTGGTGGACTTGGATTTGAACAGCGTCGCAGACCTTCTACTTGTTTCTGCTCCACTGCATAATGAGGGGGATCAGGAAGGAAAAGTCTTCATCTACACCTTTACCACATCCTTGTCCCAGCGACGTGTAAACCTGAATGTAAAGCACATTCAGTCAGTGAAAGGAATCCCAGGACAAAGGGGGAGGTTTGGCCTGACGTTGGCCAGCCCTGCAGATCTAAACAGGGACGGTCTGGTGGATGTAGTGATAGGAGCACCTCTAGAGGAGAAAGGAGAGGGCAGCATCTATATCTTTAATGGAAGAAAAGAAGACATTACCCCCACCTTCTCACAGAGAATCACAGGCTCTTCTGTACGCACTGGGCTGCAATTTTTTGGTTTTTCTCTGAGTCAGTCTGCTCTGGACCATAGTGGAGACCAGCTGCCAGATCTTGCTGTTGGTTCCAAAGGAGCAGTCATACTTTTAAGATCTAGACCCATTGTGAAACTGTGGAACAAAGTAACTTACAACCCATCCAAAATCCCCACCAGAGACACCGACTGCAGCAGTCCTTTGAAAAACACACTAAAATTGTGTTTCTCTATAATAGGATCAAATACTGGCATGACAGaCTTGACTGCAAATGTAAACTATACACTAACACTTGATGCCAAACGACAAAGCTACCGAGCCTACTTTTCACCGAAAAACCGTGTTCGATTTGGCATGATATCTGTGTCGATGCAGGAGAAGTGCAATCAGCATGAATTTTTTATAGAGTCTTGCCCCAATGATGCACTAAATCCATTATCTAATGAGTTAGTGTATACGTTTGAGGGTCTTCCTATTGTAAGACAGAACAATCTACGGCCGATGCTGCTTCCTACCACAAAGACCACCTTAGATACCAATCTGGATTTTGAAATAAACTGTGGAATCGATAACATCTGCATTGATAATCTCAAGGTGGATTTTAACTTTTCTGGatACTCAGTCATACAAGTTGGAATAATGCAGGATATGAATGTAACTGTCTTTGTAGAGAACAGAGGGGAAAATTCCTACAACAGTCGAGTAATTCTCAAATACCCATTTGGACTTTCCTTCAGGAGAGTCACCACTAAACAGGGCAGACTGGAGTGTGTATCTTTGGACAGTGATGAAAAAGCTGCGCTGGGGGAGACTACATGTTTCATCAGTAAACCCATCTTCAAGAATAATGGTTTGGCTACCTTTGATGTTACATATAGcataaacaaagaaagtaacTTTGACAGGACGGTGACGTTCACTGCAAATGCTTTCAGTGACAATGACAGACATTCACCTGACAATGAACTATTCAGAAAGAAAACCATTGATGTTAAATATGCCATCTACATTGCATTGATCAGGCATGAGAATTCCACTATCCACATTAACTTTACTGCAGGGAAAAATGACCTTGAGAAACCAGTCCACCAAATATTCAAGGTGGAGAATGACCTCAGGGATTTGAACGTCAACATTTTCATCAGAGTACCCATAAAATTAGGAGTTAAGGACATCTGGACTAATAACAACTTGCAGATTCAAGGCTGCAATGCAGAGAGAGTTGAGCAGCCTACAATCCCAGATTTTGTGGCAGCACTGCAAAAACAGCCTGAGGTGAATTGCTCCGTAGCTGTATGCAGAGTGTTTAAATGTGCTGCAAATCTCATTAGAAAGCAAATGAAATTCTACGTCATCTCTGGTAATGTCAGCTCTGGATGGATTGAACAGACTGGACTGCGTTCAGCAGTTTTCGAGCTGGTCAGTACAGCAACACTGGACTATAACAAAACAGCATATATCTTCTTCTCCTTTGATTCTATAAACACTGCACCTGTTGGCAAGATTAATACCCAGGTAGAGGTGTATGAGGAGAAATTACCCCTTAAGGAGACAATTGGAGGTGTTGTAGGAGGGCTTGTGCTTTTGGCTCTTATCACTGCTGGCCTCTACAAGGCTGGGTTCTTCAAAAGCAACTATAAGAAGATGTTGGAGGAAGCAGGAGCAGGGGCTGAGGGACCCAGAGGAGACGCAGAGGCACTAAGTCAAGAATGATCACTCTGCTCTACATTTCCTGTTACGCTTAATCTTATTTGTAGTATAAGGTGTCCTTAATCCTAAGGAAAATTTCAGGAGAGTATACAGTGCTCTTCTGATTAATTATAAAACCTAATTTCAACTTGTATATGGGGAAAATGCATTAGCAACCATTTTGCCTTTTGCTAGTCAGTTGGAATTTctcagagaaaaagaaaacttgcTTAGAACTTACAGCATTAACTTTCTCTTATAGCTGCTGCAGCTTATAGTAATGTTTAGGCAAGCTTACAATCAAGTATGAAGGTTGGCATGCTGTATTTACCAACATGCatatttgatttcatttaaaattttatgttACATGCACACAGACGTCACCCTTTAAATTGCAGATACAGAAGTGTAGAACATGTCAAAGAGGCACATCTGAACTTTGGTTATTGAAATGTGTTCAAACATTGACTGGGGATTTGAGATCACATTTTACTAACTGAAACTCCTAGTTGCCCAAAAACCTATTTTGGCGCATTTTGATGTCTTTGTAATAATGCTGGATTATTTCTTAAGATAACTAATGGCATATAACTTTGTTGTATTGCTCagacatgttaaaaaaaatacagcctaCTGTGTAATGATggaaa

Function

GO: NA

KEGG:

id description
K06461 ITGAM, CD11b; integrin alpha M

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226496 lncRNA upstream 7283 5614407 ~ 5619108 (+) True G191329
TU226475 lncRNA upstream 113236 5512691 ~ 5513155 (+) True G191310
TU226427 lncRNA upstream 243582 5382597 ~ 5382809 (+) True G191273
TU226421 lncRNA upstream 260033 5366136 ~ 5366358 (+) True G191267
TU226420 lncRNA upstream 262888 5363288 ~ 5363503 (+) True G191266
TU226560 lncRNA downstream 5047 5671014 ~ 5671252 (+) True G191386
TU226561 lncRNA downstream 6175 5672142 ~ 5672495 (+) True G191387
TU226663 lncRNA downstream 56862 5722829 ~ 5723604 (+) True G191472
TU226687 lncRNA downstream 74197 5740164 ~ 5740905 (+) False LOC113527671
TU226695 lncRNA downstream 106933 5772900 ~ 5776010 (+) True G191497
XM_026914933.2 mRNA upstream 126646 5494906 ~ 5499745 (+) True tbx6
XM_026915824.2 mRNA upstream 141714 5477331 ~ 5484677 (+) False nif3l1
XM_026915825.2 mRNA upstream 141714 5477475 ~ 5484677 (+) True nif3l1
XM_034309633.1 mRNA upstream 141714 5477746 ~ 5484677 (+) False nif3l1
XM_034309511.1 mRNA upstream 156283 5464205 ~ 5470108 (+) True cabp5a
XM_026915490.2 mRNA downstream 16074 5682041 ~ 5689581 (+) True mapk7
XM_026915697.2 mRNA downstream 64187 5730154 ~ 5740896 (+) True LOC113527671
XM_026914736.2 mRNA downstream 80906 5746873 ~ 5766384 (+) True mmp25b
XM_026914737.2 mRNA downstream 80906 5746873 ~ 5766384 (+) False mmp25b
XM_026915189.2 mRNA downstream 274982 5940949 ~ 5964560 (+) True kansl1a
TU226411 other upstream 285828 5337253 ~ 5340563 (+) False LOC113527051
TU225934 other upstream 787022 4755097 ~ 4839369 (+) False G190865
TU225847 other upstream 1031278 4593107 ~ 4595113 (+) False lrrc18b
trnae-cuc_25 other upstream 1193079 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225438 other upstream 1843896 3782131 ~ 3782495 (+) False rasd1
TU226808 other downstream 303776 5969743 ~ 5983237 (+) True G191581
trnas-gcu_1 other downstream 549878 6215845 ~ 6215926 (+) True trnas-gcu_1
trnal-aag_2 other downstream 550400 6216367 ~ 6216448 (+) True trnal-aag_2
trnal-uag other downstream 556750 6222717 ~ 6222798 (+) True trnal-uag
trnas-gcu_2 other downstream 557569 6223536 ~ 6223617 (+) True trnas-gcu_2

Expression Profile