RNA id: XM_026914971.2


Basic Information

Item Value
RNA id XM_026914971.2
length 5679
RNA type mRNA
GC content 0.50
exon number 28
gene id hdlbpb
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 23239297 ~ 23265400 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACCGACTCTCGCAGAGTGAATCATTCTCAGTGTTTACACTGTCAGCTGTCAAAAACTAAACAAGCGACTCTTCTTCTCGTCTGATAAGGACTGAAAACGCCGACCAGCACTGAAGAGGTTACCGTAGCGCCCCTCAGGACGGACTCTCTGGTTTTCGACCCTTTGCAGCGGGAAAGCGGATCAACTCTTGTAACATGAGCTCGGTGGCTGTGTTGACTCAGGAGAGTTTTGCCGAGCACCGTAGTGGGCTGAAGGACACGCAGATCTCAGGTGGTGTTTCTGAGGATGAAGCGTACATCCCCACCTACCTGGAAGCCTTCCCTCCGTTGCCGGAGAAAGGCGCTCCGGGGGAGAGATCAGGAGAGCCAGTGGGAGCTTGGAGCAAAATTCGACCCATTAAAGCTTCGGTCATTACACAGGTGTTTCACGTGCCATTGGAGGAGCGTCGATACAAGGACAACAGCCAGTTcggagaaggagaagaggcGAAAGTGTGCTTAGACATCATGCAGAAGACCGGCGCTCACATCGAACTCTCTCTGGCTAAAGACCAAGGCCTTTCCATCATGGTGACGGGGAAGCTCGACTCGGTCATGAAGGCTCGCAAAGAAATCGTGGCTCGACTCCAGACTCAGGCTTCGGCCACGGTCATCATTCCGAAGGAGCACCATCGCTTCGTGATTGGGAAAAATGGAGAGAAACTACAAGAGCTGGAACTGAAAACAGCCACCAAGATCGCTATTCCCCGTCCCGACGACCCGAGCGCTAACATACGCATCACCGGTACCAAAGAGGGCATCGAGAAAGCCCGGCACGAGATCCTGCTCATCTCCGCAGAACAGGACAAGCGCGCAGTGGAGCGTCTGTCTCTAGAGAAAGTCTTTCATCCCTTCATCGCCGGTGCGTTCAACCGACTGGTCCAGGAGCTGAGCCAGGAGACAGGCGCTCGCATCAGCATCCCGCCACCCAGCCTGCTTAAGGACGAGATCGTCATCACTGGGGAGAAGGAAGCTGTCGCCATGGCGATCGCACGCATCCGCGCCATTTACGAGGAGAagAAGCGAAAAACGACGACCATCTCAGTGGAAGTGAAGAAGTCTCAGCATAAATACATCATCGGACCAAAGGGCAACAGTCTGCAGGAGATCATGGAAAGCACCGGAGTGTCGGTGGAGATGCCCCCGTTAGACTCCAGCTCTGAGACCATCATCCTCAGAGGAGAACCGGACAAACTGGGACCTGCCCTGACCCAGGTGTACGCCAAGgCTAAGAGCGTGATGGCAGTGGAAGTGACCGCACCAGCCTGGCTTCATCGATTCATCATAGGAAAGAAAGGACAAAACATCGGCCGCATCACACAGCAGCTCCCCAGGGTGCACATCGAGTTTACAGACGGAGAAGAGCGGATCATTCTGGAAGGCCCGACGGAGGAGGTGGAGCAAGCGCAGGCCCAAATCCAGGAGATTATTAATGATCTGATGTCGAGGATGGACTACACGGAAATTAACATTGACCAGCGTTTTCACAGACACCTCATTGGCAAGAACGGGGCAAACATAAACCGGATCAAGGAGCTGTACAAAGTGTCGGTGCGGATTCCTCAGGACTCGGATCGCTGTGGACTGGTCCGCATTGAGGGAGACCCGCAGGGAGTGCAGCGGGCTCGCAGGGAACTGGTGGACATGGCCCAGCGCATGGAAAACGAACGCACCAAAGACCTGATCATAGAGCAGAAGTTTCACCGCACCATCATCGGTCAGAAGGGAGAGAAGATCAAAGAAGTGCGAGAAAAGTTTCCTGAGGTCATCATCACGTTTCCTGACCAGTCTCAGAAAAGTGACATTGTGCAGCTCCGTGGGCCCAAGAATGAGGTGGAGAAATGTGCCAAGTTTCTCCAGAAACTCCTGGTTGAGCTGGTTGAAAGCAGCTACTCGATATCTGTTCCCATATTTAAgcagtttcacaaaaatatcaTCGGCAAAGGAGGTGCCAACATCAAAAAGATCCGTGAAGAGACCAACACGAAGATCGATCTCCCCACGGAGAACAGCGAGTCAGAGACGATCGTCATCACTGGTAAGAGGAGTAACTGTGAGGCAGCGCGGGACCGCATCCTCGCCATCCAGAGAGACCTGGCGAATCTGAAGGAAACGGAGGTGAGCATCCCGGCCAAGCTGCACAACTCTCTGATCGGGTCGAAGGGGTGTCTGGTGCGCTCCGTGATGGAGGAGTGTGGAGGTGTTCATATTCACTTCCCCGCCGAGGGCTCAGGGGTGGACAGGGTGACCATCCGTGGGCCTGCAGGAGAGGTGGAGCGAGCCAAGAAACAGTTACTGCAGCTCGCTGAAGAGAAGCAAGTCAACAATTTCTCAGTAGAGCTGCAGGCCAAGCCCGAGTACCACAAGTTCCTGATTGGCCGAGGAGGGGCGAACATTCGGCGTGTCCGTGACCGGACTGGAGCTCGCATCATCTTCCCTTCGCCTGATGATCCGGAGCAGGAGCGCATCACTATCATGGGCCGAGAGGAAGCAGTGCTGCTCGCTCAGAAAGAGCTGGAGACCCTCATTAAAAACCTGgaggACGTGATAGAGGACACTATGATCGTGGACCCGCGGCATCATCGTCACTTTGTCTGTCGGCGAGGGCAGGTGCTGAGGGAGTTAATGGAGGAGTACGGTGGTGTTGCCGTTAGTTTCCCTCGTACAGGAACACACAGCGACTGCATCACTCTGAAAGGAGCCCGAGAGTGTGTGGACGCTGCAAAGAAGCGCATCCAGGAGATCATTCATGATCTGGAGTCTCAGGTGAGTGTGGAGGTGGTGATTCCTCAGCGCTACCACAGAGCTATAATGGGGCCCAAAGGCTGCAGGATCCAGCAGATCACCCGAGAGCACGAGGTCCAGATCAAATtcccagagagagaggaaacagcagCTCAGGAAACCTCTCCCGTGGAGAACAGCAGCACCAGCCCCGAGACGGACTCCGTGCCTCGAAAATGTGACATCATCACTGTGACAGGTCGTGCAGAGAAGTGTGAGCTGGCACGATCGGCCCTGCTAgcGCTGGTTCCTGTGACGGTTGACGTCGAGGTGCCCTACGACCTGCACCGCTACATCATCGGCCAGAAAGGAGCCGGAATCAGAAAGATGATGGAGGACTACGAGGTGAACATCTGGGTTCCTCAGGCTGAGCAGCAGTCTGACGTGATAAAGGTCATGGGGCAGGAGGTCAGCGTGGAGAGAGCCAAGCAGGCGCTGATGTGCAGAGTCAAAGAGCTCCAGGCAGAGCAGGAGGAGCGGGCCTTACGGAGCTACAAGGTGACCCTCTCTGTCGACCCTAAATACCACCCCAAAATCATCGGCCGTAAAGGAGCCGTGATCTCGCAGATCCGGAAAGACCACGACGTCAACGTGCAGTTCCCTGACAAGAGCGATGAGCAGCAGGATGCGATAGTGATCTGGGGTTATGAGCGGAACGTGGAGGAGGCCAAGGCAGCTATAGAGCAGATGGTCGCAGAGCTGCAGGAGATGGTGAGCGAGGACATCCGGCTGGATCACCGGGTCCACGCACGCATCATCGGAGCTCGCGGCAAGGCCATCCGCAAACTCATGGAGGAGTTTAAAGTAGATATCAGGTTTCCTCAGCCAGGCTCGGACGACCCCGACAAAGTGACAGTCACAGGCCTGCCAGAGAACGTCGATAAAGCCATCGACCATCTCCTCAACCTGGAGGAGGAATACATGTTGAGTGTGACTGAGACAGAAACGCTGGCTGCCTATATGAAGCCTCCGTCCCGGTTcgtgggaggaggaggagacgaGGAGAGCCGAGGCCCAGCTAAAGGCTTTGTCGTCAGAGACGCTCCGTGGAACGTCCCAGGCAGCAAGgcccCTGACATGAGCAGCGCTGAGGAATTCCCTACATTTGGCTCTGTTGTGGCGCCAAAACAGACGTCTGCCTGGGGGCCCAAAAAGTTCTGAAAGAGAGCGAGACGTGACTTATccctacctgtctctctctctctctcacgtctGTTCCTATAAACATCAAGGAGAACCCACAGAACATTTTCAGTATGTACATGTAGCTTCCTCCCAGAGCTGATCTCGTGCTCTTTCTATCCTCTCTTTAAATGCCAGCGGCAGTTCGGACTGATCTGATCATGTCAACTGCACTCGTCTCCATTCTCTCATTGaaatgaaattacacacattttaacttCTCAACCCGAGACGTCACTCGTTTCCTCTTCCTAGCGATGGTGGACGTGAATCgttttagattttaaataattgctTTGAGTCATTCCAAACTCTCTCAAACAGCTACGATTTCTACTGGCACTGATGATACACTTTTATAATTTAGAGAACCCGTAGTTCACTGTGtggttggttttttttatagcttttaatgaaagtgtgtgtgaatcaggGCCTCGTTTATAAAACTCTGCGCACGCACAAAACAGTCAGTTCCAACCAGCACAAGATTTCAGTCTCACTCTGTATCCTTAGTGTAActgtaagtaaggaatgaatgaagttacaggaaaataattcagcacggggtggtgtgaagtgtgagttagataaccactctgtacaaccgtgatgagctgaaaagcatcacAAGAAGATGAATCTTGGGGTGGATGAGCTAGAACAGGAGAAGTTCAactcctgccagccaagaacaggaagctgcAGTGGACactggggaaaaagaaaaaaaaaaaaaactgacgaAATCAGTTTTCGTACTGACGAAATCATCTTAACTCctaactattttaattttaatcatgACTGATAAACTCGAAGGAAAATATCATTGTTTTTCAGGTTTCCTTTTCAGTTCCTTACTTTTCCACTGACGACtcagaatttcacacacacttccatgaTGTAAATGCTTTCTGAGGACTGTTTTATGCGTACGCAGTGTTTATAACCGAGGCTGAAGAAGCGCTTGGTGCTTTTAGCTGTTcctttttactgtaaaaaactgttttattattattattattattattattattattattattattggtctTGGAACCAGAAAGTAGCGGTCCATATAGTCTCATCTGGAGATTAACCTGTgaagaatatttattatatgatctctttttttttttttttaagtttcttatttatttaatctgtatTGTACATATTTGCAAATGcgtgtatatatttgtttttgtctctaATTATGTGCTTTCACTTTAGATGTAGTGATTAGAGAAGTTCAGAGGTGAACTTTGTAAATGCAGGGTAAGAAAGGTCATGTACACGTCTTTTTAAAgatgcagtttgtaatgttgaaTGCTGAAATGTGAATTGCAGTTAGAATAAAACAGTGACGAGACTCCCCCTTCCCCTCAGCAACCCCACCTGCtctaatgtatatatacacgGCTTATTAGAGGTCATTTCAGGGccggaaaaaatgaaaatcaaaagCATGAAACAAAGAAACGATCCCAGTCTATTACAGGGAAATGTTGCGGATTAACAGTTTTTCTAAGCGTATCTTAGAAGCAACATGATAAACCCAAGTTTAGAAGCacttttaaaattacaaactgcacctttaaatgtttTCAGCGATCGTGGCATTTTGTGTACAGTTTTTTGAACAGAAACTAAACTTTTTTTCCACATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237895 lncRNA upstream 133389 23104676 ~ 23105908 (+) True G201077
TU237911 lncRNA upstream 135798 23103284 ~ 23103499 (+) True G201093
TU237831 lncRNA upstream 370459 22866908 ~ 22868838 (+) True G201019
TU237612 lncRNA upstream 891179 22347890 ~ 22348118 (+) True G200807
TU237582 lncRNA upstream 996985 22124233 ~ 22242312 (+) True G200784
TU238015 lncRNA downstream 3227 23268627 ~ 23269419 (+) True G201186
TU238014 lncRNA downstream 3392 23268792 ~ 23269419 (+) False G201186
TU238025 lncRNA downstream 7174 23272574 ~ 23398660 (+) False polr2a
TU238060 lncRNA downstream 46678 23312078 ~ 23313405 (+) False LOC117595720
TU238079 lncRNA downstream 109674 23375074 ~ 23380990 (+) True G201234
XM_026915466.2 mRNA upstream 71810 23132483 ~ 23167487 (+) True wnt3
XM_034309362.1 mRNA upstream 71810 23132524 ~ 23167487 (+) False wnt3
XM_034309363.1 mRNA upstream 71810 23132529 ~ 23167487 (+) False wnt3
XM_026915340.2 mRNA upstream 385801 22849303 ~ 22853496 (+) True LOC113527478
XM_034309562.1 mRNA upstream 391732 22810078 ~ 22847565 (+) False pkd1b
XM_034309602.1 mRNA downstream 45860 23311260 ~ 23318154 (+) True LOC117595720
XM_034309049.1 mRNA downstream 50193 23315593 ~ 23321228 (+) True LOC113527736
XM_026915816.2 mRNA downstream 50196 23315596 ~ 23321228 (+) False LOC113527736
XM_034309273.1 mRNA downstream 116344 23381744 ~ 23398663 (+) True polr2a
XM_026914512.2 mRNA downstream 136783 23402183 ~ 23420064 (+) True capgb
TU237980 other upstream 32918 23205666 ~ 23206379 (+) True G201154
TU237829 other upstream 368013 22798181 ~ 22871284 (+) True mrpl27
XR_003402874.2 other upstream 1226993 22008511 ~ 22012304 (+) False srsf2a
TU237322 other upstream 1236023 22002824 ~ 22003274 (+) True G200571
XR_004579324.1 other upstream 3672613 19526642 ~ 19566684 (+) False LOC113527713
TU238054 other downstream 58673 23324073 ~ 23329571 (+) True G201214
TU238026 other downstream 92111 23357511 ~ 23398660 (+) False polr2a
TU238950 other downstream 1116387 24381787 ~ 24382287 (+) True G201962
TU239119 other downstream 1395825 24661225 ~ 24665525 (+) False LOC113527710
TU239415 other downstream 2063809 25329209 ~ 25354290 (+) False dupd1

Expression Profile