RNA id: XM_026914980.2


Basic Information

Item Value
RNA id XM_026914980.2
length 4607
RNA type mRNA
GC content 0.44
exon number 6
gene id ppm1bb
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17643020 ~ 17669237 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggttcagccaatcagagagctcCATCACAAGCTCCCTCCCCTTCACAAGACTCTGACCCGATGAAGAGCTTGGCCCTCTCTATGGGAGAAAGATCATTTTCAGTGTCCGCACAGTTCTTTATTTCACCCCGGGAACCTTTATTCATGCGAGACTTTCAATAATTTCATGTTTAGGGCGGTGAGTTGTTTTGGGGCGCAAAAAACTGGCCCTAAAATGCCAAAGAATTCACGCTGTGAAACACCGAAAACGGAATTATCGGCTCTCATGTAAAGTCAAAtctgtttgattgtttttttaaagaagcgAAGTGAAGAATTTGGGATAAAATATCCAGAGGTTATAAACAGAAGTCGGAACGGAGTCCAGATATCCGTGTTATTGTATAAGATTGTGTCCTAAGCCATGGGGGCATTTTTGGACAAGCCAAAAACGGAGAAGCACAATGCCCACGGTGCAGGTAACGGCCTGCGTTTTGGTCTGAGCAGCATGCAGGGCTGGCGGGTGGAGATGGAGGACGCTCACACAGCAGTGGTGGGCCTCCCTCATGGCCTGGATGACTGGTCCTTCTTTGCCGTTTACGACGGGCATGCCGGTTCACGTGTGGCCAACTACTGCTCAAAACACCTACTGGAGCACATTATCAGCAGCAGCGAGGACTTCCGGCCTGGTCGTGACTCGGTGGAGGGCGTGAAGAGCGGAATTCGCTCTGGATTTCTGAAGATAGATGAGTACATGCGCAACTTTTCTGAGCTGCGTAATGGTATGGACCGTAGTGGCTCAACAGCTGTGGGCGTGCTGCTCTCGCCTGAGCACCTCTATTTCATCAACTGCGGCGACTCTCGTGCCGTGTTGTGCCGTGCTGGTCAGGTGCGTTTCTCCACTCAGGACCACAAGCCCTGCAACCCTCGTGAGAAGGAGCGCATCCAGAACGCTGGCGGCTCCGTTATGATCCAGCGTGTCAACGGCTCCCTCGCAGTGTCACGTGCCCTTGGCGACTACGACTACAAGTGCGTGGATGGAAAGGGACCCACAGAGCAGCTGGTGTCGCCTGAGCCTGAAGTGTTTGAGATTCCTCGTgttccagatgaggatgagtttgTGGTGCTGGCTTGCGACGGCATCTGGGACGTCATGAGCAACGAGGAGCTGTGTGAATTTGTGCGCTCCCGTCTGGAGGTGTGCGATGACCTAGAAAAAGTCTGCAACTCTGTGGTGGACACATGTCTACACAAAGGCAGTCGTGACAACATGAGTGTTGTGCTGGTGTGTTTGCCCAATGCACCCAAGGTATCGGAGGAGGCAGTGAAGAGAGAGGCAGAGCTGGACAAGTTGCTGGAGTGTCGTGTTGAGGAGATCATGGAGAAGTCAGGAGAGGAAGGTGTCCCGGACCTGGCTTGTGTCATGCGCAACCTCTCTGCTGAGAACATCCCAAACTTACCACCAGGAGGTGGTCTTGCGAGCAAACGCAGTGTAATTGAGGCCGTGTACAACAGGCTTAACCCACATAGAGAAGATGATGGGAGTGGAGGTGACCTGGATGACCCATGGTAGCCAGAGACACCCACAACTGCAGTCTTCAAATGAGAATGTCCTCAGttcacacaaaaagaaaatctttacTCACACCTTTTGGTTTTGATTCCGAGAGATTCATAGGAAATATTCAAAGCCTGGAACGAAAACACAAACGCATCAAAACACTTCTTTCGACGATGAGGAATCTGCAGAAATGGCaagatttttcttttagaaCTGCACCATTGTATGGTAGAGAGAAATAATTTCACTTTTTgttccatgttgttttttttgttttttttttccccttcccgCTGTAAGTTAACGGAGTGATGATGAGACTGAGGATTTGTGGCTTCTTGAGCTGTAGGAGAGACTCTGGACTTAATGGCTGGTGGACAGACTGCAGCACCAGCGAGAGCTCTGAGAGGGAGAGGCGAGGTGTTTGGACCTCTTGTCAGTGATGCAGGGTGCTCTAGCATGATGAGCTGCCCTTGCACTTCCTCACCTGTCTCATACATGGCTCTCCTCCTCACTCTACGCATGCACAGCTTTCCAGAGACATGACCGATAGGCATTACTTATTTTCAGTGTGTTCACCATGTTCAGCCACCAAATGCCACCAACTCTACTTAAATCCTGCATTTACACTCTTTTCTGATTTTCTCTCGTTTGTCATCCTGCTGCCTGAATATCCTTATATATCCTTTTGCATTTTGTTAGCAATTATATTTTGTCAGATGCTAGTTTTGGTGCTtgcagtaaaacaaaacaaaaaaaaagtagtagcACTCATTAGAACAAGCGTTAACTAGGACATGTGCACTCAGCAACTCGAGGGAAAATTAACTACTGTAGGGAGTGTAAATATGGTGAGCTTTTGGGTTTTGGGTGGCTTTGTGACCTTCTACTTCCTGTGGCACTCACGGTGAAACAGAGCTTCACAATCCAGTTCTAAAGGACCCTCAGCCGAATTCAGAATTTTTATCACATTCTACAGCCTttgatttaaatctgttttaataaGTGAAATCTATTTTTGTGCAGTAGATGATTTAGAACAATTGGGGATCCAGAAGAACTGGCTTCAACTGGCTAAAACCTCTCCTTTAAGACCTCCAGATCTTTTACCTTTGCGCATCCTCTCATTTCTCTACTTGTGGTCCTGACTTGTGGCTTgccttctgattttttttttttttttttctaaaaacagtGTACTATGTAGAACCatttaacacaaaacattttaacttaatttttaaacaattctgcattttaaagctttttattaaagcttttttcattataattaatGGTATAATTGGTATTATTTGCAGTTAGATTTGGTTACAGGGGAATAGCATGactttaaataaagtaattgaGACGGTTGAGGTTGGTAAAGTATTTCTAAAGCAAAACTGCTGAACTGCATGCATGCATATAATATTGTGATGTTTGCCAGAACAACAGCGAGCAAACACTACTCCAGTAGTACTGCAGTAGGTACTGGAATTTTTCATGGGTGAatctttttcccctcttcccTACCCCTCTTATTTCTCGAACCCCCTCTTTGTGTCTGGGTTGACAGTTATTTAACTTAACAGTATTTTTGGTTTCATATGTTAATCTGCGCCTGTGAGAATGACTGGAAGATGCTTGGCATTAATGGTTTACTCGCAGGACACTTGGCTTTGGATGAATGTACCCCTtgtttacacatatacacaaacatgcatgtATAACGTTGAACAACTTCTGTGTTGCTCATGCCTTTCGTGCataattatatacaaatatCAAAGTAGCCTGATTAGATATTTGAAATATTCACACATACTCATgcgtgacaaattaaaggaaaaatcagtGGATCTCTTGTACTGTGGAGGGCATTTTGCTGGTATGAAAGATGAAACCTGTctgtcctgatgggagtggttaATTCAGGAATGACAccacccccatccacagggcacgaggACTCAGAGTTTGAGtctaaaaatgatgtaaatctcATGCTCTGGCCTTCACAGTGACCAGAGCTCAACCCAGTTTCACAAACGTGGGAGACTGGAATCATGTGCTAGACATCGCTctgcaccaccaccaccaccatcaaaacacTGATTGAGGTAATATCTTTTGTAAGAATGTtgttcatctctccagtacagtttcagagacttgGAGAATCTGTGCCAAGGCCTGATGAAGCTGCTCTGGTAGATTGTGGTGACCTAACACCTTCGTAATACACGTTGTTAGTTTTTCCCTTTAGTTTGTCACCTGTCTTTTTGATAATCAGGCTATCTTGATACATACTTGTCATATATGCCCATTTGAGGTAGATGTTTGTCCACTCTACAGAAACTATGATTTGCATTCGAGGCctttctttaagaaaaaaaaaaaaaacaaaaaaaacttttctttccCCTCCCTACTGATTTCTCACTGACCTCACCTGATCTGGTGTGCAGCTTTAAAATGTGTGTCGTTCAATTTGAGATTATtgttaatgtgtatatatatatatttgcagttTTATTTCCCACTGGTACAAATAAATTGTAGCCATATGCTGGAAAGCTTAATTTTATGATGGTTAGAACTAGGAAATAAATTTACTAAATGAATTGAAATGGCAaaagatatatattttgtgCTGTGGGTGCTCATGGACATGCACCCGATTTTTTTGTATATCTACAATGATTGATGACTAGATTGATTGTTGcgacagattttatttattcagaagATGTGGCTTTATGAGATGTGCTTTGTGAGAGCGAGGAGGGTTTGAGAGGAGTTGGGAGGGGGGAGATTGCTGGCCCAATCTGTTTTTGAGATTGTGATGGAGGGCtgtctcgttttttttttctttcctcagtCTATTAATCTCTTGCACTCTTTCTCGCTCCCAcattctctcttcctccctgaCTCCATCTCTCTGACCCTCTCTATCCACCTGCTAACATCCGTGTAATTATAGTCCCCAGTACAATGTTGTGTTTCATTAGGATACAGTGAAATGATCTGTTATCAATAAAGGATTGTTAAAGGTTTGATAATA

Function

GO:

id name namespace
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0030145 manganese ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04461 PPM1B, PP2CB; protein phosphatase 1B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234570 lncRNA upstream 66434 17575940 ~ 17576586 (+) True G198091
TU234559 lncRNA upstream 68787 17572305 ~ 17574233 (+) True G198081
TU234560 lncRNA upstream 71015 17570664 ~ 17572005 (+) False mta3
TU234562 lncRNA upstream 73858 17568378 ~ 17569162 (+) True G198084
TU234561 lncRNA upstream 77989 17564599 ~ 17565031 (+) True G198083
TU234567 lncRNA downstream 943 17670180 ~ 17670945 (+) True G198088
TU234642 lncRNA downstream 194302 17863539 ~ 17912523 (+) True G198158
TU234657 lncRNA downstream 246189 17915426 ~ 17918595 (+) True G198170
TU234661 lncRNA downstream 264793 17934030 ~ 17934370 (+) True G198174
TU234664 lncRNA downstream 268295 17937532 ~ 17937771 (+) True G198177
XM_026915018.2 mRNA upstream 70955 17545793 ~ 17572065 (+) True mta3
XM_026915019.2 mRNA upstream 70955 17545793 ~ 17572065 (+) False mta3
XM_026915020.2 mRNA upstream 72104 17545793 ~ 17570916 (+) False mta3
XM_026915218.2 mRNA upstream 155294 17480223 ~ 17487726 (+) True pigf
XM_026915604.2 mRNA upstream 169195 17468136 ~ 17473825 (+) True gch2
XM_026915577.2 mRNA downstream 39679 17708916 ~ 17711812 (+) True six3b
XM_026915176.2 mRNA downstream 63523 17732760 ~ 17792629 (+) True prkcea
XM_026914794.2 mRNA downstream 126791 17796028 ~ 17822290 (+) True epas1a
XM_026914964.2 mRNA downstream 163568 17832805 ~ 17850858 (+) True glud1b
XM_026914800.2 mRNA downstream 199625 17868862 ~ 17878282 (+) True mmrn2b
trnai-uau_6 other upstream 65644 17577283 ~ 17577376 (+) True trnai-uau_6
TU234137 other upstream 779525 16855770 ~ 16863495 (+) False anapc16
XR_004579176.1 other upstream 4084507 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 4084591 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 5169281 12472683 ~ 12473739 (+) False LOC113527673
TU234778 other downstream 485914 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 772649 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 1136848 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other downstream 1136886 18806123 ~ 18811512 (+) False si:ch211-221j21.3
XR_004579324.1 other downstream 1857405 19526642 ~ 19566684 (+) False LOC113527713

Expression Profile