RNA id: XM_026914981.2


Basic Information

Item Value
RNA id XM_026914981.2
length 3423
RNA type mRNA
GC content 0.48
exon number 19
gene id afap1l2
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13025631 ~ 13056775 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgagagagagagagagagagagagagactctgtcCACTAGCCTGACTAATCGGggctgtgagtgagtgtgtgtgagagtctgtgtgagagtgtgtgtttttgtcgagtttctctctccttcatctttTATCACAGAGCTTTGGATCGCTTTACTCAGCCCCAGAGCCACAGAGAGCTCCGGAGTGTCCATCTCCGCCTCTACAATCATGGACAAGCACAAAGTGTTGGAGCAGCTATTGGAGGAGTTGCAGCGTTTCCTGAAGCTCCTGGATGGAGAGAACCTGAGTGGGAATGCCACTGTGCAGAAGAGCCTGCTTACCGACCTGCTGCACTCATACACATCTTCAAACGGTGGGGATGAAGAGTATATCTATATGAACAAGGTCCTTGTTATTGGACAgaacaaagacaaaacagacaaagACCACAGAGCAGAAACAGAGGCCAGTGAAAGTGCAGGAAAGCATGTCTGTGCACCACAGAAGAGTCTTCCAGAGCTTCCTCCACCCAGAACACCCATAGTAAGGAGGGAGCCATTTTCTCTCCCACCAGTTCCAGCACCGGCATGTATGGATTCTCCAGAGAGTTACTATGAGGAGGCACAGCCCTATGATTCAGCCATCAATGATGATGGTGATGCAGTGAGCAGCTCCTATGAGTCCTACGATGAGGAGGAAGTGCCGAAGGGCAAGTGTACAGCGCAGCACCAGTGGCCATCCACAGAGGCTTCCATTGAGCTAATGAAGGATGCAAGGATTTGTGCTTTCCTCTGGAGAAAGAAGTGGCTGGGCCAGTGGGCcaaacagctgtgtgtcatccgAGAAAATCGTCTCCTTTGCTACAAGAGCTCAAAAGACCAGACCCCACTGTTGGACGTCAGTCTGGTGGGCTGCAGCGTCATCTACAAAGAAAAGCAGCCTAAAAGGAAAGAACACAAGCTGAAGATCATCCCCCAGGGTGGTGAGGCTATTGTGCTGGGCCTGCAGAGCAAAGAGCAGGCTGAACAGTGGCTGAAGGTCATTCAAGAGATCAGTCCCAAATCTACCGAGGGCCCTGATGTCTCTGATTCGCCAAGACTCATCTGTACTAAGACTGAGCTTAGTGAGAGATACTCCATGGCATCAGAgagtggcagcagcacagacaGCCATGTTGAGAACCTTGAGACTAAAGATGTTAAGAAGAAATCCGGTGCTGGCCTGAAACTAAGTAATCTGATGAACATTGGGAAGAAGAAGATTTCGTCTTTAGAGAGTCCTGAAAAATGTGTGGAGACATCAGGCTATCTGAATGTCTTGTTGAACAGCCAGTGGCGGACACGCTGGTGTCTGATAAAGAATGGTAAGCTTTGGTTCTACCAGGATAAGGGCAAGTCTAAGGTTGCCCAGCAGCCTGTGCCTCTGGAAGGGTGTATGGTGCTACCTGATTCCAGCCCAGAACACCTCTACTCATTTCGCATACAAATGGATGGAGAGGAGCTTGCTATCCTAGAGGCTAAATCATCTGCTGACATGGGCCATTGGCTAGGACTCTTACTCTCACAGACAGGAACCAAAACTGACCCAGAGGACCTCACCTACGACTATGTAAACTCTGAGAGGATATCCAGTATAGTCAATGCAGCCAAGACCTCCTTGTACTTAATGCAGAGGAGATTTTCAGAGCAAAATATGTACACCGAAAGTCTCCCAACAAACAACAGTGGCTCTAATGACATATACGATGATGTGGCCTTCACAGAGAATGAACAGGAGGAGAGTCAAGATGGCGACAGTGAGGTGGTGATAAATCCAGAACAGGATGAGAAGGACAGGGTATATCTGGATCTGATCCCTGTCCGCTCCTTCCTCCACACAAATTCAGGCCAAGTGTCCCCCCATTTATCCCCTACAACAAAGAAAGAGCTCAATCCATCTCCAACTCCAAGTAATAGGCAACCTGACCCTGGCAGCGAGGAAGGTGTATCTGCAGAGTCTGAGTATGAAGCCGTTTTACCTACACCCAAAGAACATCCCGATCCTCCACCCATTCCCGCAAGATTGGATGTGGACACCAGCACTTCCCCAAGTCCTCCTCTTCAGCCCCAAGCACAGACCCAGACCCAGCAACACCAGCCCCAGTCCCAGCGGGTCAGCCTCCTGAGTAAAGAAGGCCAGAAGAAGGGCTTGTCCTTACCTTCACCTCATAGTCAGATACATAGTCAGCTCCttacaccttcacacacaccccacagtCCCCCAACCTCAAGAGTAAGGGCTGCAAGCGCTGATAGGGTCCATGACAGACTGAAGCCATCTCTAACAGTGTGCTCAGGGTCAATTGAGGTGAAGCTGGGGAAGAACCGAACAGAGGCTGATGTGCGACGCTTCACAGATGAGAAAGACCGGCTGgagcgagagagggaggaggTCAAGACCACTCTGGCCTCACTGAGGAAGGAGAGACGGGAAATGAAAGAGGAGCTGAGTTCATGTCAAGATCCTTCTAAACAAGCTACTCTGGAGGCATATCTGAAGCAGAAGGAGGAGGCATGCCGGGAGGCGGAACAAAGGAGAGTGGAGGTGGAGctcaggctggtggaggtaaAGGAGAGCTTGAGGAAGGTGGAGGCTGGACCCTTTACTCTGGGCACCACAGTGGACAGCAGCGTACTGGATTTGCATTTGCCCAAGATCACCACTCCTGCCCCCTCCGCTCCCATCAACAACGGCGAATTCTCACCTGTTAACTCAGCAACGGCCCTGAAAAATAGGCCCCTATCAATCATGGCACCCAGCAAAGGAAATGTACTGCAGAAAGCCAAGGAGTGGGAGAAGAAATCTACAAACTAGGCATGGAAATGAAGAGAACAAGAGCAACGTGACAATGATGACAACTCGCAACTATGCAAAGCCTATGCAGGCTTCAAGGTCTACTTCGGCCAGGGAAAGCAGCTTTTTTCGACCATGTACTCTTTACTCCTCAGCCCTCATTTGCTACTTCCTTTTCCCACTTCTCCTCCAGTGAACGACTGTGATGGTAATGCTTACCACAGGCAGCTTATCAGAGGCAGCCCTGCTGGTGCCTGCATTAACCCAACAACCAATGCCACTGGACACTGCTGAATCaatctatttaatattttttttatatgaaaaggGAGGGATTCcatatttagcatattttataaaatattttaaaatatgtattttataacaATGAAGAGTACATTTTGGAAAGGCATTTTTTTATACAgcacagaaaagaagaaagcagAGAGCCTCATATAGTTAACAATGTGGTGCAGTCTAGACTATAGCTTAAATTCTTAAATATGCTGGTAGACTAGatgtaaatacatttatacagaGCCGATGGGGGTCATTTGGCTGTATACTAGGTAAAACATGCACTTTTTTATTCCAATAAAAATCAGTTCTGAAA

Function

GO: NA

KEGG:

id description
K23782 AFAP1L; actin filament associated protein 1-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231613 lncRNA upstream 62388 12958940 ~ 12963243 (+) False ablim1b
TU231526 lncRNA upstream 181070 12844325 ~ 12844561 (+) True G195512
TU231306 lncRNA upstream 367308 12658105 ~ 12658323 (+) True G195301
TU231292 lncRNA upstream 382105 12643268 ~ 12643526 (+) True G195287
TU231214 lncRNA upstream 475271 12550134 ~ 12550360 (+) True G195225
XR_003402861.2 lncRNA downstream 7089 13063864 ~ 13066622 (+) True LOC113527319
TU231926 lncRNA downstream 409990 13466765 ~ 13466983 (+) True G195839
TU231948 lncRNA downstream 457901 13514676 ~ 13517886 (+) True G195847
TU231960 lncRNA downstream 561889 13618664 ~ 13618939 (+) True G195857
TU232108 lncRNA downstream 636940 13693715 ~ 13695761 (+) True G195994
XM_026915726.2 mRNA upstream 3636 12958935 ~ 13021995 (+) False ablim1b
XM_026915730.2 mRNA upstream 3636 12979035 ~ 13021995 (+) False ablim1b
XM_026915724.2 mRNA upstream 3636 12979036 ~ 13021995 (+) True ablim1b
XM_026915725.2 mRNA upstream 3636 12979036 ~ 13021995 (+) False ablim1b
XM_026915735.2 mRNA upstream 3636 12979036 ~ 13021995 (+) False ablim1b
XM_026914892.2 mRNA downstream 34411 13091186 ~ 13113005 (+) True ccdc186
XM_034309494.1 mRNA downstream 89105 13145880 ~ 13155997 (+) True dclre1a
XM_026915026.2 mRNA downstream 110311 13167086 ~ 13177922 (+) True LOC113527338
XM_026915034.2 mRNA downstream 136249 13193024 ~ 13195130 (+) True si:ch211-28p3.4
XM_026915025.2 mRNA downstream 147551 13204326 ~ 13219416 (+) True nrap
TU231182 other upstream 551892 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 1739363 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 2961005 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 3390564 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 3511796 9513764 ~ 9513835 (+) True trnaq-cug_15
XR_004579176.1 other downstream 426526 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 426526 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 3798995 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 4520508 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 5098376 18155151 ~ 18158629 (+) False pde6gb

Expression Profile