RNA id: XM_026914985.2


Basic Information

Item Value
RNA id XM_026914985.2
length 5138
RNA type mRNA
GC content 0.51
exon number 28
gene id svild
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9732360 ~ 9786384 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTGCACCAGTGTAACCATGCTTCCTGGGCTGAGACCAAATGTGTGGCTGGAGATCGGTGTGTATACATGCGTGACTGAGAGCAGtGAGATGCTTTGAGCAACGCTGAATCATCCCCTGGAAAATAACCTGCAAGTCCAACTTTTTCTCCAGTCTTCAGAGTTTTGAAGCTGAATTGTGAGCTGTTTTTTGTAAACCCAGGCACCAGTAGCTGTTCTGTAAAAGGATGGATGCGTTAGAGACTCTGTCAGGCTCTGCGCTGGACTCCAAAGCAGAGCGTATTGCACGCTACAAGGCCGAGAGGCGGCGCGAGTTGGCGGAGCGGTATGCCAACCTGGAGGACCTCACCTCCAAATATACCAGGAGGGAGAGACTCCGGGACAATGCAGATGCTCCAGACACAGCCCCTAGCACAGAGCAGAAGCCTAAAGAGGTCAGTGTCTGTACACGAGATCAGCCTGCTGAATCTAACGACAGGGAGCAAGGAGAAAACGAGAAAGAAGTGCAGAGTGAAACTAACACGAAACAGGGAACTGCAACAAGATCCCGGCACGGTCTGCTGGGCACAGAGGAAGTCAAACCGCCAAAGGCTGATGACAAAGAAGATGACAGCTGTAAGACAACTGCGTCTTCAGGGATGTCTCGCAGTAAAGATTTGGAGTCACCTGAAAACTCGTCTAGCTCAAAGGCCATACAGGAGGAAGCCATACAGGAGGGTCACCGCGccaacagacagagagagccaATCAGCACTCAGGACAGGCCAACTAAAGCCAGTCAGTCCTTATTGTCTTCATCAGCTAAGGAAGAGGAGCCAGATGGAGAGAAGGGCAGTGAGAAGTTGGAAGCACAGGATGAAGGGGAAAAGGACTCTGACAGTGAACTCGGGGTTGGTGAGAGACAGTGTGAACTAGTTATCGAGGAGCCCCACTCAATCCCCATGCCGACTGTGAAGGCTGATGAGCAGGAGGCGCTCGCAGCCGGCTTGCAAAGGCAGGACTCAGGTCCACGTGGCCTCCGGGGCATCCTAAAGAAGAGCCGCTCTGCCAGCCTGGAGGCCGAGCCTGCGCCGGAGAGAAGCGAAGCTCATGGCAAAGACTGTGAGGAGAAGAAGCAGGAGGACAGAATGGAAGAGATAGAAGCGGAGACAAAGGTGGATGGTGGGATAAAGCTCCTGCAGAGGGGAAACAGCAGCTCCAGTGATGCTCCCCGTTCACCTTCTCTGTGTACGTCTGAGGACAGCGAGGAGCTGGACAGCAGTCTGGATGGTAGCATGAGCTCATCTTTCAACCAGAGGCTGGCTGAGCTGACAGGTAATGAGGAAGACCGGCACACTAAGCTGAAGAAAACCAAAGCCAGCGATGTGGTCCAGATGCCCTTGGCGGACCGCTTCAGCCAGCTGCAGGACTCTGAGAACGCCTGGAAGAAGAAGaaaTCTTCAGCCGAGGTGGAGACAAAAATGTCCCTAGCCCAGCGGATGAAGATCCTGCAGGAGAAGGAAGAGCAGTGGAAAGCCAAAGGGAAAGGAGCTGCCAACGACTCCACTCAGTTCTCTGTGGCTGGACGCATGGCCAAGAGAGGCCTTGTATCCCCCAGTAGAGATGATGTGCCTGTTATCCTCAGCAAGAAAGCAAGCCACAGCACACCAGTCAAGCCTTTAGAAGAGATCTCCACTCGACCTGATGCTGAGGGTGACAAAAGGCTTGACAAACTGGAGTCCTTTTTAGACAAACTTCACAATAAAGGAGTGAGCAGTAAACCTTCTACCATCGAGGTGActgaggagaaggagaaggaggtgATGACcctagatgatgatgatacgTTTCAGCGCTTTTTCAAGTCCATGTCCCCTACAAGTCTAAGCTCAAATTTGCTTTTGGATGAAGAAGAGGATTTCAGCGCTGTCCAGTTTGACTCTCCAAAgttAACCACATCAGTAGCAGAACACAGGCGGTCAGTGAGGCCCTCCCGCAAGACAAAAGGCTCAAGAAACCCTCTACGTGCCCTGGCAGCTCGAGATGACCTGAGACAGGCTTACACTGAGCAGAGACTCAACATAGCAACCGTGGAGGCCAAGAGGATCCAAGTGGAGAGGATGGCCAAGCACTCAAGACTGGCTGGTTGTGCCTTGGCCGGATTGGCAAGTAAAGAAAACTTCAGGAACGTAAACCTGCGAAGCGTTAAGTCCACTGAAGTGGTGACCAACAACAGCGCCGTGCCTTTTCACAAGCTCATGCTCATCCACATCAAAGggcgCAGGCACGTTCAGGTGCGTCTGGTGGAGCCCACGGCCCTCTCTCTCAACAGCGGTGACTGTTTTCTACTAATCACCCCAAATCACTGCTTCCTGTGGTGTGGGGAGTTTGCCAACGTTATCGAGAAAGCCAAGggCTCAGAGATGGCACAATATGTCCAGGCTAAGAGAGACCTCGGCTGTAAAGCCCCACAGGTCACTTTGCTGGAGGAAGGCATCAACACAAACAGCCGGTCTGCCAAGGACTTCTGGAACCTTCTCGGAGGACAAACCGAATACAGAGctgCGGGGGATCCAGATGAAGATGAACTGTATGAGAGTGGCATCATAGAGGCGAATTGTATCTACAGGGTGGTGGAAGACAAGCTGGTGCCTTATGAGGAAGCCTGGGCCTCCATCCCCAGTGTGTCTCTGCTCAACTCCAAAGAGGCCTTGGTGTTTGATTTTGGCAGCGAGATGTATGTGTGGACAGGGAAGGATGTGGCTCTGAGTGACAGGAAGGTGGCAGTGCAGCTGGGCAAACAGCTCTGGAGCGGAGCCTATGATTACAGCACCTGCAGGGTCAACCCCCTGGACTCCTCCTCAGCCAATAAGGACCTCCCTCAACATGGTGAGGGCAGGCCAAGCTGGGCTCTGTTCGGAAGGCTTTCAGAGCATAATGAGACAGCTCTTTTCAGGGAGAAGTTTCTAGACTGGGCCGAGCGTAAACCGATCAAAGAGGAGCCAGCAGTGGAGGAGGTGAAGAGTCCAGTACACCAACACTTCACTGCCACCCAGGAGTCAGACCTGAAGCCATGTGATGTAAAGGCTCTCCTGGATGGAGGAGACAATCCTTTGAAGATGGCCTTAGAGGGTGTAGATGTGCATAGAGGTTACGGATTGGTCAGTTCAGAAGATGGAAGGCAGGCTCAGTTAGCCACTTTGGCAGTAGACGCGTGGCACATTCGTGAGTTCGATGATTTTGAGATCCCGGCTGAGAGCGTGGGTCAGCTGCATGAGGGTGACACGTACGTCATCCGCTGGAAGTACTCCATCACAAGTGTGGtGGGTAAAAGACAGAAGCCTGGTGAGCTGAGTGCCACAGGGCCTGGCAGAGAGCGCACTGCTTGCTTCTTCTGGCAGGGCCGTCAGTCAAGCGTGAGTGGGCGGGGCACGTCAGCTCTCATGACGGTGGAGCTGGGAAACCAGCGGGGAGCACAAGTACTCGTCACACAGGGCAAAGAGCCACCCTGCTTCCTCCAGCTCTTCAACGGAGGACTAATCATCCACCAAGGCTCCAGAGAGGACAGTGCCAAAAACACAGgtggctGGAGGCTGTTCTGTGTACGTGGGGAGGCAGCAGTGGAGGCGTCTCTTCTGGAGGTGGAGTGCTGCAGTGCTAGCCTGCGCTCTCGCGGCTGTCTCCTCCTCCTGGGCGTACACCAGAGACAGCTGTATCTGTGGCATGGCTGCAAGGCTCAGCCAACAGCCCGCGAGGTGGCCAAGAGGACTGTGGAGCGCCTCACACACACcTGTCCTCCAGAGCTCGGGTTAAACAACAACACTAATCTGAAAGTGCAGGAGATAGAAGAAGGCACAGAGCCACAGGAGTTCTGGGATGCACTTGGCCAGCAGGACAGGAAAACCTATGACTGTATGCTGCAAGatCCAGGAAAATACAACTTCACACCTCGTCTTTACCGCCTCAGTGCCAGTTCTGGAACCTTTGAGGGGGAGGAACAACTGAGTCCTTCACGCGTGACAGGCTCTGTGATGGCGATGCCATTCCTGCAGGAGGACCTTTACTCCACGCCTCAACCAGCCCTGTTCCTGCTGGATAACAGGATGGAGGTGTACCTGTGGCAGGGCCAGCAGCCAAAGGATGCAGAGTGCACGGGTTCTGCTAAGATCCGCTGGGACAACGAAAGGAAGTGCGCCATGGAGACTACCCTGCAGTACTGCAAAGCAAAGAACTCCAGGCGACCCCCGTCGGCCTATCTAATCTTGGCTGGAGCTGAGCCCCTCACGTTCACTAACATCTTTCCATACTGGGAGAAAGATTCCAGCATCAGagtgcagGGTATGAGGAATAAGGTGATCCTGGTAGAGGATGCTCTGTCCAAGCTGAGTAAGAATCAGTACTCTCTGGAGGAGCTGACCACCAGACCACTGCCTGAGGGAGTGGACCCTCTGCACCTTGAGCTCTACCTGTCTGACGAAGACTTCCAGGTGGCTCTGGAGATGACACGAGAAGAATTCAGTGCTCTCCCCAACTGGAAACAGCTCAACCTAAAGAAGAGCAAAGGCCTCTTTTAGATTTGTAATGGAGTATTCTCAAAAGGAAGGACTGAtccttttgtgtgtttatgtgggaaACCAGTCCATGTATAGTACCAAATGTACAGTGtgaacttttttaaacaatgaacTGACCTGGCAATTTTGTAGAGAACTTTTCTAAATGCCAATCATTGTAGCAAACTAGCTTTATACATGAGTTGAATGGACTTTCTATATACTCTAAAAATGCAAAAGTATACCAGTTGGGGATATTATGTCACTTATATCAACTTATGTTTGACTAATTACGTACAAGCTTGAATTTTTTATGGGTAATACAGGTCTTTGTTTTAAGGAAATGGTGGTTTTTTTAAAGGCTAGCTTCCTAAAACTCCTAACTCCCTAGTGTAAAGCATGTTTGCTCTTATTAGTCGTTAGCAAAATGAACTACTTTCAAAGCCATATAGATATGCACATGTGTGCAGTTCTGCACTCTACAGTGTTATATGTGGAGTTTGGGCTCTAATACTGTGGCTTTCCAGTATATTCTACCTACATTAATGCAAATAACTGTTAATAACTTTTTTGTAATTGAATATAATGTGGACTTTATGAAATTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229145 lncRNA upstream 75288 9663930 ~ 9665516 (+) False arhgap23b
TU229133 lncRNA upstream 87544 9652172 ~ 9653260 (+) True G193542
TU229098 lncRNA upstream 152985 9587165 ~ 9587819 (+) True G193509
TU229034 lncRNA upstream 224665 9515921 ~ 9516139 (+) True G193458
TU229031 lncRNA upstream 225342 9512821 ~ 9515462 (+) False mrpl58
TU229297 lncRNA downstream 37663 9824047 ~ 9824468 (+) True G193645
TU229298 lncRNA downstream 39043 9825427 ~ 9826864 (+) True G193646
XR_004579148.1 lncRNA downstream 357969 10144353 ~ 10148786 (+) True LOC117598497
TU229556 lncRNA downstream 438318 10224702 ~ 10226319 (+) True G193842
TU229539 lncRNA downstream 538572 10324956 ~ 10329985 (+) False G193828
XM_026914753.2 mRNA upstream 11823 9724009 ~ 9728981 (+) True nmt1b
XM_026915889.2 mRNA upstream 17930 9707683 ~ 9722874 (+) True plcd3b
XM_026915890.2 mRNA upstream 17930 9707683 ~ 9722874 (+) False plcd3b
XM_026914489.2 mRNA upstream 49209 9669702 ~ 9691595 (+) False arhgap23b
XM_026914757.2 mRNA downstream 54999 9841383 ~ 9848378 (+) True znf281b
XM_034309582.1 mRNA downstream 69350 9855734 ~ 9869864 (+) True muc13b
XM_034309584.1 mRNA downstream 69350 9855734 ~ 9869864 (+) False muc13b
XM_034309588.1 mRNA downstream 69350 9855734 ~ 9869864 (+) False muc13b
XM_034309591.1 mRNA downstream 69350 9855734 ~ 9869864 (+) False muc13b
XR_003402888.1 other upstream 105737 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 226969 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 228173 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 228564 9512169 ~ 9512240 (+) False trnaq-cug_13
trnar-ccu_4 other upstream 231008 9509724 ~ 9509796 (+) True trnar-ccu_4
trnal-aag_8 other downstream 278161 10064545 ~ 10064626 (+) True trnal-aag_8
trnaq-cug_16 other downstream 1499813 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 2686299 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 3696917 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 3696917 13483301 ~ 13558429 (+) False tcf7l2

Expression Profile