RNA id: XM_026914999.2


Basic Information

Item Value
RNA id XM_026914999.2
length 2075
RNA type mRNA
GC content 0.45
exon number 11
gene id atad1b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10201989 ~ 10214955 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATATCGCCTTTATCCTGTGTAATGAGCCTCTGCGCTTCCAGATAGCGTTGTATTGTCTTCCTGTGAGTAAATCTGTGTGAAAGATCTGTGCGAGTCGGCGGCGTGAGTGTTGCACTGAAGAGAAAAATCTCAGTAAGCGTGCATTTGCCCCCTTGGTGGACAATTCTGCAAGAGAGGGCAGGAAATTACTGAAATGCTTACGCAAGCAGAAAATAGGGGGCGCTGCGCATCTGTTCAGTTGGTTTGCAACCGCTCATTAAAGCCACCGAAGAAGTAAAGGCGGAAGAATCGGCGAGTCGTCGAGGCATTTAGGTAATTATGGTGTTGAAGGAGATACCAGCAGACAATATCACCCGGCCCTTGGGCCGCAATGAGGTCATTGGTTTACTCTTCCGCCTTACGATATTTGGTGCTGTTACCTACTTTacaataaagtggatggtggaTGCTATTGAtccaacaagaaaacaaaaagttgAAGCACAGAAGCAGGCAGAGAAACTCATGAAGCAGATTGGAGTGCACAACGTCAAGCTGTCTGAGTATGAGATGAGCATTGCAGCCCATCTGGTGGACCCGTTAAGTATGCAAATAACGTGGAGTGATATAGCTGGCCTAGATGACGTAATAACTGAGCTGAAGGACTCAGTCATTCTTCCCATCCAGAAAAGGCATCTGTTTGAAAGGTCAAAGCTTCTTCAGCCTCCCAAAGGAGTGCTACTGTACGGTCCCCCAGGCTGTGGAAAAACTCTGATAGCCAAAGCCACAGCCAAAGAGGCCGGTTTCCGGTTCATCAACCTGCAGCCCTCCACTCTGACGGATAAATGGTACGGCGAGTCCCAGAAACTGGCTGCAGCTGTCTTCTCCCTGGCCATCAAGCTCCAGCCCTCTATCATCTTCATTGATGAAATTGACTCCTTTTTAAGAAACCGCTCCAGCTCGGACCATGAGGCTACTGCCATGATGAAGGCTCAGTTCATGAGCTTATGGGACGGACTAGACACAGATTACAAATGCCAGGTTATAATTATGGGTGCCACCAACCGGCCTCAGGATCTGGACTCGGCTATTCTTCGCAGAATGCCTACTAGGTTCCACATTAATCAGCCTaATATCAAGCAGAGGGAATCGATACTGAGGCTCATCCTGGAGAATGAGAATATTGGGGCCAGCGTAGACCTGCGTGAAATAGCAAAACACACAGATGGCTTCTCGGGAAGTGACCTCAAAGAGATGTGTCGAGATGCAGCTCTGTTCTGTGTACGGGAACTCGTGCATGCTGAGGAGAGTTCAGAGGAAGACTACATCCGACCCATCCAGCAGACTGACCTCCAAAAAGCCactgaaaagatgaaaaagtcGAAATCGGCAGGAGCACCAAGTATGCTGCTGGATGCAGCCTTGGACTGATTCTGATACTACTGGCCAGGGTGAATTATTTCCCCAGAAGATTATAATACTTTTTGTAAATTTAACATGTTTATCATATAATATGGTTTGCATAAGAAGGTGCTCTAGAAACAGGATATTTGATCTATCAACTCTCTCTTTGCAatatgcctttttttctttttttttggctgtttttgcCACATCATACTATATGCCTTTTGGGCATTAGGTTTGCTAAGAACTTGCTGCATGGGATATTAGGagaatatttataaaactgtacagaAGCAGGCAACATGTGTATATAAAGCACCTAGGTCATATTCATTTCAGACAGTTAAAAAATAACAGATCAGGAAGGGAATGAGATTCCTTTGTATTTCTAAAGGATTTCTACTTGCTGGTTTGTTTAGTGACTTACGTTTACAGATACTGGATATATAGTGTagacacccctgttaaaattgtaggtttttgtgatgttaaaaatCAAAGCAAGATGTCGGTTCTATTTCCACCATTAACGGGACATAGCAGCCAATCTGAAGCCATTCCACTGTTGACTTGGATTagtgctttgggttgttattgtgctggaaggtgaaatttttcttcatcttcacctgtctaacagaggcctgcaggtttttatGGCAAAATaaatgctgccaccaccatgcttc

Function

GO:

id name namespace
GO:0005777 peroxisome cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K22530 ATAD1; ATPase family AAA domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579148.1 lncRNA upstream 53203 10144353 ~ 10148786 (+) True LOC117598497
TU229298 lncRNA upstream 375125 9825427 ~ 9826864 (+) True G193646
TU229297 lncRNA upstream 377521 9824047 ~ 9824468 (+) True G193645
TU229153 lncRNA upstream 421034 9694909 ~ 9780955 (+) True G193544
TU229145 lncRNA upstream 536473 9663930 ~ 9665516 (+) False arhgap23b
TU229556 lncRNA downstream 9747 10224702 ~ 10226319 (+) True G193842
TU229539 lncRNA downstream 110001 10324956 ~ 10329985 (+) False G193828
TU229536 lncRNA downstream 110685 10325640 ~ 10336247 (+) True G193828
TU229537 lncRNA downstream 117951 10332906 ~ 10336247 (+) False G193828
TU229541 lncRNA downstream 117951 10332906 ~ 10336247 (+) False G193828
XM_026915217.2 mRNA upstream 35074 10135916 ~ 10166915 (+) False rnls
XM_034309212.1 mRNA upstream 35074 10135917 ~ 10166915 (+) False rnls
XM_026915216.2 mRNA upstream 35074 10135918 ~ 10166915 (+) True rnls
XM_026915532.2 mRNA upstream 77147 10118888 ~ 10124842 (+) True ankrd22
XM_026915533.2 mRNA upstream 77147 10119187 ~ 10124842 (+) False ankrd22
XM_026914923.2 mRNA downstream 24815 10239770 ~ 10254637 (+) True cyth3a
XM_026915377.2 mRNA downstream 65731 10280686 ~ 10290416 (+) True pms2
XM_026915721.2 mRNA downstream 75502 10290457 ~ 10296523 (+) True rsph10b
XM_026915722.2 mRNA downstream 75502 10290457 ~ 10296523 (+) False rsph10b
XM_026915350.2 mRNA downstream 140822 10355777 ~ 10359207 (+) True bhlha15
trnal-aag_8 other upstream 137363 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 566922 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 688154 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 689358 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 689749 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 1071242 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 2257728 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 3268346 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 3268346 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 6640815 16855770 ~ 16863495 (+) False anapc16

Expression Profile