RNA id: XM_026915022.2


Basic Information

Item Value
RNA id XM_026915022.2
length 6072
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC113527333
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 20202594 ~ 20228997 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATCCGTGGAATTCATTTCCTGTGAAAGTTAGTCGTAGTGGCGCAGAGATGCAGACTCTGTGTCTCAGGAAAAACATGCGGAGTGAAGTTTAACTAAACAGcttttatttgttgtattttttcatcatcattGTAAGCTCGTGCTCAGCAGGGAGGAACACACTGCGGGAATGGCTGAGCCTTTACTGAAGCGGACCTTGTCCAAGCTGCGGGGGAAAGACAGATCCCGCCGCAAAACCGACCCCAGACTCAACGaTGGACCGAGGAAGACAGAGCTCGTCCACAGCTCTTCATCATCCTCGGTGACTGAGATGGAAGAGGAATtcacaagacacacacagatcaccGTGTCTAAAAAACAGAACTGGGCCAAGCTCTCATCCACCTCCCGGGATGTGGAACAGCTCTCAAGCCTGAGCTCGGTGTCCCAGGAGCGCGAAAGCAGCTCGGGCAAGCCCCAGGCTTCCAAACAGGCGTCTTTCAGGGAGAATGGGTTCGAGGGGAGATGGAAAGATTTACATAAAGACGGAACCTACCCCAGAGCTTTCCAGAAGGCCGACATGGCTGACAGTGCTGACATGGCCGACACAGGTCTTCCAGAGTTGGTAACACCTCCGGTCACGGATTACTGCACCTCCTTGGGCATGAGTAAGCTCTCCGGGCAGGGAGTGTACCTTCAGCACCTGGAGAGGAGTAGCCGAGCTTGGGTGCTATCCTCAGGAAAGACCCAGGCTCCGGATGAGGCCTACACAGCCTGCTTCACAGAGCGAAGGCACGTGACTGAGAGCGAGAGCAACATTTGGTACAACCCAATCCCAGAGGAAGAGGACACTCGAGCCAGCGTGGAGAAgctgaaagagaaggagaaggatgTACTTGAAGATCCATGGAGAAGAAGAGAGCTAGAGGGAGCACCAGAGGAGCGGAGAGATATTCTTCAACAGTCTTGTCACCCCGATGCTCTTTATCTGGGTGGCAGCAGCGGAGGTGCTAGTAGTGTTAGTGAAGGTGCTAGCGGGGCTGCTAGTGGTTCAGCAGGCTCTTCTGGAAGTCCTGGAGCACAAACGAAAAGCTCAGGAGGAATcacgagcagcagcagcatgatGGAGAAGATTAAATCCCCCGGCACAGTACGGCGTCTCTCTATGAAGATGCGCAAGCTCCCAGAACTGCGTCGTAAGCTCAGTCTGCGCTCGTCACGTAACCAGCGGCACGTTCAAGGACAAGGGGGTGGCAATGATGCACCAGGGGGCACCGACGAGGCCTCACCACCCAACACACGTAAAGAATCCTCCAACAATGTCATCAGCAGGTACCATCTGGACACCAGCGCTCCCGCCAGACCGAGGCGTCGATCATCACGCATGCGTTCTGCTAGCAAAGGTGGTTATCTAAGCGACGGCGACTCCCCTGAGCTTCTGCCCAAGCAGGATTCGAGTCAGGGTTTGACCGAGGGGTCTCAGGGAACGTGTCAAGAGACCCAGGAGTCACCCCAAGCTCCTTCACACCGCGGGTGGCAGGATGCAGTCGGGTCATTCCGGCACTACTCACTAGCAGAGCAGCCGAGGTGCGCCCAGAGAGTGTCAGGCCTCCTCACGGTGCATCTGCTCGGTGTCTCTGAACTTGTGCGATCTCGCACCACTAAAGACGTCTTCTGTGCCATCCAGGTGGATGGAGTGACGCGAGCCCGCACCGCTTTGCTCACCTGCCAGGATACGTCACTCCCGCTAAACCACACCTTCAACCTGGAGCTGGAGCGAGCTCGCATGCTAAAGCTAATTGTTCTCACACCAGCTGCTAACGCTGTGGATGGATCCACAGGCCTCAGTGGTCAAACACGCAACCGGGTATGCTGCCTCGGCGCTGTGGCAATCCCCCCGCTGTTTAAAGCCTCCAGGactcagcagctgtgtgtgaagcTGGAGCCGAGGGGTTTGCTGTATGTGAAGCTGACTCTGTTGGAGCAGTGGGAGGCGCCGTCGCCCCGCCTCAGTGAGCTGCCGCCCCCCTCCGTATTCGGCGTGGAGCTGCGCCGCCTGGTGGAGAAAGAGGCCTGCGTTCCCAAAGTGCCTCTCATCATTCAGAAATGTGTGGCTGAGATTGAAAAGCGGGGACTCAaggttGTGGGTCTGTATCGTCTCTGTGGCTCTGCGGCTGTTAAGAAGGAGCTGCGTGATGCATTTGAGAAGGACAGTGCGGCTGTCACTCTCAATGAAGAGCTGTACCCTGACATCAATGTCATTACTGGCATTCTGAAGGATTATCTGCGTGAGCTGCCTTCACCGCTCATCACGCGGACTCTGTATGAGGTGGTGCTGGAGGCCATGTGTGTTAGACCAGCGTGCAGGAATGACgacacacacagatcacacaaCACCGTCGCCCTGCTGCAGTGTCTACCTGAACCAGAGAGGGCCACACTGTCTCTCCTGTTGGATCATCTGAGTCTGGTGGCTTCCTTCAGCGACTGTAATCTGATGACATGTCAGAACCTTGCTGTGTGTTTCGGCCCGGTTCTGCTCACTCCGACGCAGGACTCATGGAAAGGGGCAGGGCCTGGCGctttcccatcagcccctgcaggACCCGGAAGCAACCTGGGAGGAAGAAGCTTCACACAGCAGAGCATGGAGATGGCCAGTGCTGTGGACTTCAAGCGGCACATCGAGGCTCTACACTATCTGCTGCAGCTCTGGCCGATTCCAACAGGAAGAGTGCCAGCTCAATCACCCTACCGTTCAGAGGATGAAGAGGCTCCTCCCTCCCAGAATTCCCTGCAGCGTTGTGCTCAGCGCCCGTCATTACGCATGGAGCTGCCGTTACCACAGGACGTGGCGGTGGTGTCGCGCAGGGGGCGTGGCCGCCTGGAAAGCCCACCCTGTAATCGCTATGCTGGCGACTGGAGCGTGTGTGGGCGGGACTTCCTGACCAACGATGACGCCGATTACGACGAGGTGGCAGGCAGTGAGAGCGATGAGGAcgaggagaagaaaaaggacTGGGTGTACACGGACGATTTTGCGCTGGACTTTGACGCACCGTTTACATGCAGACTGAGTCTAAAAGACTTTGATAACCTAATTTCAGACCTGGAGCGTGAACTCGCCAAACAGATCAACATCTGCCTCTGAGCACCGCCTCCATGTAAATCCCGTATCTGCACTGAACTGAAGTCATTCAGCAGGAAATACAGAATTAACTATGTGCTATGAATCAAATAACAGTTAGCTTAGATGGTgttgatcagccaagacatgatGTGTCTCTCCATCTGGAATGTgctaattttgttttaaaaattatttttgctctgAAGCTGTGAGGCTAGTGTAGCTAAGTAATGGAAACTCCACTTTAGTGCTGTGAAGAACCTCAaaccatccaaaaaaaaaaaactcacactgCAATAATCTCAGACATgcttatatgtttatatacatgGACATTTTATAGACATGCTTATACACTGTTATCtttaaaaattgacaaaaggacctcacagagctaaaaacagtcGTAGCTGCAGCCATTTTGAGGTTGAAGTTCTTCTTCAGCACATAGATTGGTATCAACAAAAGCATAAGACTCACCTATAAGGTGTGGCACAAAAATGGAAGGCTCAGTGGTATTTTTGAATGATTTGGATGATAATacaattcacattttatttgtgaatgtttatttacacaatgctaaactggatTCTGTAACTTTCCCCTGCTTCTTAGGTACATTAGCCTTGCAGTAGCTCCagtagaaaaattaaataagcaaTCTTCAGACACCTTCGTGTCTTGGCTGACTGGTGAAGGGGATTAAAACCTGGAGTATGCACGTAATTAAAGACCTGATGCTGGAAAAATGCACTGCAGATACAGGCGTTCATGTGGGCGGTTTAATGATGAAGGTTGACGATAAGCAGGTTCTTCTGCTTTAGTAAAGTGTGAAGTTATATTTAATAGAAAACCCAGACAGAGGTGTGTGTAGGGCAAGTCAAATCCTGCAGAGCCTCAGAAGCACAGAGTTTAGTTTTCATTCCCAGCACAAACACAATACAGCAGACCTGATTCGTCTAGTTTCCTAGGGATTCCTTTGATAACTTCTGGTCTGATGTCATTATAATTGCATTAATACTCAAAATCATAGTGTTACACCCCAGCCCATTAAAATACCACCATCATCTCTGCCTTTATGGTCAGGATtcactaacactgcactactGACTGCAGTTAGTACACGATTTTATACTACACCATTTATTATACACTTCCTGCAGAGTTTCCTAGCAGTTTGATGTTAAATTATAACATGTCGCTTAACACAGCGCTTGCTAGAGGGCACAATCTCGTCTCACAGTGCAGATTCTTAGCTCTGTTTAAGCAGGAAGGAAACATGCAATGATTCTTccgttcagaaaaaaaaattcttttggAACACAATACTACTTTCAGGTCTGAGAGCATCATAGCTGCGTGAAAACTCAAAGATGATGTGGATGGTCGTACCCTGATCCCTTCAGGAGGCAGCTGCTTAGACACCTTTCCATTTGGAAAGCAGAATAAGGAAAGCTAATTACTAAGGTTACTTGTTTTAGTCAAATTtgggggtccctggaggaccaGTGGCTAGGCGACAGTGCCCTCACCACCGCGGCCCAGACTCCACTCCCGACCAGGGAACCCACCGCAGcaactggggttgcgtgcaacagtgcgcgTTGCGCaacagcatggttgaattctcttatctgattggtcagaagctgtgttatttttgtataacagcacgacttggccagtagttccagctgtcaCATGAATGATACGTTAATATCAGTGACCTTGCTCAAAtacgttattatttctatagtaacagctttcCTTGTACACAGACCTGTAgaacagcatgagcagcagttcagaaaGATGCAGttagctggcttcacatgtctcagaagcatgtgttagccttcaccctccccggttggtaggtgttgtgtgatagggcagagttagctagtgggtgggaattgacagGAAAATCTGTGTCGGCCTATGCAGCTGCCTCctaaagaaaaaagtgatttgCAAGATTTCTGTTAGGCATAATGCTCAACTccctaaataaatgtttcagttAGGCTCTATTTCAGCCTTAAACAATCTCCTCTTCTCTACTTATGGTCAGAattttcacttcattactgACTTATTCTTATTGTCTACAAATTGTTAGGGCTAAATCTGCATTTTCGATACACGACTATTGATTTAAAGCAGCAGGAAAGCCTGTGCAGTGCCTATTTTTGCACGTCTTCTTTCCCCCTGAAATAAATCTTCCCATCCAGTGTGACCCGCCAGCAGCACTTGGGCCAAATATTGTGTAAAGTTTTCCACTGGGACATTCCGCTACAGGTCCAATCTTAATGCTTGGGATGGTTTACCCGTTCTGTTCCTGAGTTCATAAAGATTGCATTTTATTATCATACTGATGTGTTTCCTGTGCCAAACAGCAGTCAGTGATGCCTTAATGAAAACACAATCTTCTCCTTAACCTAAATGTAGTCTATGAGCCAGCACAAAGTCCTAGGATTTGGACTCTGAACTTTTTGGTCTCTAGTGATGCCCCCAACCTCTGAGCTACCAGTCAGGTGTTTGGATTGCAGTAATATTCAGTATTAGAGAGAAACTGCATTTTGCTTTCATTTAGAAGGATTGATTACTTAATTTGCACAGTTCACTTTGAGCTTGTCAGCATTTCAgcaaagaagaaagaatgagCAAATAAAGAATCCACATTTGCAGGATCGTTTAGCCTCAAAAACAAGCACAACGTGGATCAGCTaatcaggacacacacacacacaccccactttCTAAAAACTTCCAGACCAAAGACATGTTTGTTGGTTCTTTTTGCACTTCTGTATTGCGTATATGGTTATATGATGTTGCTGCTTACTTGGTCGAGTGCAGTACAAGGTGTTGCCGTTGCTGGTGTAGCActgtttctttaacatttgAGCACGGTACATATGTTTATCCGACTGTgatttagttaataaaaaaaaaa

Function

GO: NA

KEGG:

id description
K20655 SYDE; Rho GTPase-activating protein SYDE

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235846 lncRNA upstream 249286 19950787 ~ 19953308 (+) True G199217
TU235845 lncRNA upstream 258128 19944244 ~ 19944466 (+) True G199216
TU235814 lncRNA upstream 316606 19876741 ~ 19885988 (+) True G199187
TU235786 lncRNA upstream 346114 19792634 ~ 19856480 (+) True G199161
TU235663 lncRNA upstream 775999 19426380 ~ 19426595 (+) True G199051
XR_004579191.1 lncRNA downstream 5818 20234815 ~ 20251474 (+) False LOC113527335
XR_003402864.2 lncRNA downstream 5819 20234816 ~ 20251474 (+) True LOC113527335
XR_003402865.2 lncRNA downstream 5819 20234816 ~ 20251474 (+) False LOC113527335
XR_004579193.1 lncRNA downstream 5820 20234817 ~ 20251474 (+) False LOC113527335
XR_004579192.1 lncRNA downstream 5821 20234818 ~ 20251474 (+) False LOC113527335
XM_026915810.2 mRNA upstream 2322 20186824 ~ 20200272 (+) True LOC113527727
XM_034309636.1 mRNA upstream 2464 20186805 ~ 20200130 (+) False LOC113527727
XM_034309635.1 mRNA upstream 2464 20186826 ~ 20200130 (+) False LOC113527727
XM_026915770.2 mRNA upstream 185090 20012707 ~ 20017504 (+) True gpx9
XM_034309279.1 mRNA upstream 331191 19863312 ~ 19871403 (+) True mrpl38
XM_026915803.2 mRNA downstream 29877 20258874 ~ 20288139 (+) True zgc:165653
XM_026915804.2 mRNA downstream 29877 20258874 ~ 20285575 (+) False zgc:165653
XM_026915459.2 mRNA downstream 61596 20290593 ~ 20316556 (+) True mtr
XM_026915117.2 mRNA downstream 90292 20319289 ~ 20500533 (+) True ryr2a
XM_026915119.2 mRNA downstream 90292 20319289 ~ 20500533 (+) False ryr2a
XR_004579324.1 other upstream 635910 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 1390332 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 1391082 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 1692435 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 2043965 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 1773827 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 1779514 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 2569184 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 2976669 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 3095076 23324073 ~ 23329571 (+) True G201214

Expression Profile