RNA id: XM_026915026.2


Basic Information

Item Value
RNA id XM_026915026.2
length 3701
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC113527338
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13167086 ~ 13177922 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTAGGCACATTCATAGGACTATATCCGTATCAGCACATTCGTCATACCTTATAATTATTAACTCTTTGTCTTAGCACATCTCACGATGTATTTGCTAGTGAATAGaatagttatattttaaataatttatttattaaagattaccACTAATTATGCTAGAGAGCAAAAGAAACGGTGCTCGAAAATGCGGATTGCGAACGTactctttgttttctttccgCACTGGCGGTAAGTGTGTAATGAAAGAGGTGCACTTTTGAAGCGGTTATTCTGTGCCTTATAAACTTTACGTGAGACATGCCAAGCTTTGAACGAGAATGAGAGCTTTCTTTTGCTTCTACAATACATGGCGCCTCGGTCCTGTGTGTAACAGTGTTCAGTAATTTGAGTAAACTCTGATACTGATGTCACAGAGCGAGTCTGAGAGCGACATCTGGGAATACAAATCTCTTAAGAAGActaaaagacaagacaaaactCCGAAATCTAGTGAAGATGGATCAAAGCGACGGAGGCTGGCAAAGCAAGGGGCGTCAAAGAAAAAGTCAGATAAATCCTGCAGAGGGGGTAGATTGAGTACTGAGCCCAAGACAGCGACTAAACTATGTACACAGAGTCAGCCTGTTCAAGTGACCAATGCAGACGGACCACTAACCAAATCCTCCCTACCATCCGGCTCACAGTCAGCCGAAGTGCATGATGGGCCATCAGATCAGTCCAGGGGTTACTGTCCTGTCTGTCAAATGCCATTTTCCATTTTGGTCGTCCAGACAGCACAATGGCATGTTGCTGAATGCCTGGAGAACCCTGGAGAAACAAGTAAAGAATGTCCAGATGGCCTACAATGCTCCTCCTCCATTCCAAACCACTACAAGTGGTACAGCCACTCTCTTTTAGCTCACAGTCGAGCACTAAATGCCACAGAGTCTGCATCTTCAATACTGGGCCACACGCCTAGATTCCATCTGGAGCAGAAGACGTTTCATAATGATACCATTATTTATAGTAAAGATAGCGTTGTGGACAGTGCTGTCAATCTGTCCACTGCATCCAGCCAGAGTGCCTTTCCTGCTCATGGATCTAGAGAATCTCTTACTCCTGTCCGTCCTAATGCCTTCCAGCTCTTGCGCTCACCAGGGCCTGAGGatattaagaaaaagaaaggctggtccCCTTCTACCAAAGGACCTAGATCTCACACCTCAACTCAGGAAGCTAAAATTAGGATGTCAACCCCAGTGAAAGCAGGAAATGTAAGTCATGATGTTCAGACTAGAGAAGTAAAAGAGGAACCATGTACTttaggtgatgatgatgattatatcTCATACTCTCCTCTTTCTGAGCTCCCTGCTGAGACTGAAGAGAAGCAGATAAAGAAAAAACTGTTTCACAGTACAGCACTAGAGGAGGTGAATGAGAAAGATGATCATTCTGATTCACTGATATTGTTCAATGATAGTGCACTGAGTGGTGATGACCTGTTTGCTGATGTCTTGGATCAGTATGAAACCGAGAGAGTCAGAAGTCCAGGAGATCCAGTCATTAAGGAGTCTCTGTACACCTGTGACCAATTAGAGTCATTAGAGTCACATGAACATTTGACAAGTTCCAGCTGTGCAGGCCCTACTGATGGACCTCTTCAGTCCAGTTCCCCTTTTAGACACTCAAAAGACGTGcatgtgaagaaagaaagggaagatAATCCTCAGCTACCGTCTCCTCAAAGTCTGGTCCTGGAACGTCTTCGTGAATGCATATCAACTGCTGCAAAGTTCGAAAGTCTTAATTCTACTTGTGTTGATGTAAAGTCTGATTCTTTGAATCAGGAAATGTCTTCCACTCAAACAATCTTGGCCACTAGGAAACAAACTCTTTCCCTGACACCCAAAAATCCCAACCAAAGCAGGAGCATCTGGTTTAAAAACAAACTGATATTGGAGTCTTTTTTTGGACTGAAGCCtttgaaagaaaagagagaggaagttaGCACAACTGTGGAAGAGAAAGTCCAGGTGAGCTCTGCTTCAGGGAAGAGCTCAGGAGCCGCAGAGCGACAGACTAGACGGAGGAAGAACACGGCAGTATCTGAAGTGACCACGATGAGGGAAGAAGCAGGAGAAGGAGCTGCTCAGCCTACGCAAACAGAAGGCAGCCGAGGAGCGAGGGCATGGGGGAGGAAGAGGTGGAACAAAACAAGAGCGACAGATGGAGAAGCAGAAGAGCCCAAACGATGCCCGTTCTACAAGAAAATCCCTGGAACGAGTTTTGCTGTGGATGCTTTTCAGTATGGGAATATCAAAGGCATTACGGCCTACTTCCTCACACATTTCCACTCTGATCACACGGGAGGACTGAAGAAAACCTCAACTTTTCCTATCTATTGTAATAAAATAACAGGCAACCTGGTGAAGAGTAAACTGCATGTGGATGAGCAGTATATCCATACTCTCCCCATGAATGAGGAATGTGTAGTCGATGGTGTAAAGGTTATCCTACTAGATGCCAATCACTGTCCAGGATCAGCCATGCTGCTGTTGCTATTGCCAGATGGCCAGACTGTGCTCCACACGGGCGACTTCCGGGCTCATCCGTCCATGGAGCTACCGGAGTTGCAGGGCGTCAGGATTCAGACACTTTATCTGGACACCACGTACTGCAGTCCAGAATATGCATTTCCCACACAGCAGGAAGTGATCACCTTTGCTGCTAACACAGCCTTTGAGCTGGTCACACTCAACCCTCGCACGCTGATTGTGTGTGGCACCTACTCTGTGGGAAAGGAGAAGGTGTTCTTAGCCATTTCTCAGGTGCTGGATTCAAAGGTCTATATGTCCAAAGATCGTTATAAAACCATGTGCTGTCTAGAGTCGGAGCACATCTACCAGTGTATTACCACAGACATGAAGGCAGCTCGGATCCATGTTCTTCCCATGATGCAGATCAATTTCAAGaatttaaaaacatacttGAACAAGTTTTCTGGTACGTATGACCAGCTGGTGGCATTCAAACCCACGGGCTGGACCTTCAGTCAGGAAGTGGGTGTGGCGCACATACAACCTCAGGTCAAAGACAACATCAGTATTTATGGTATTCCATACAGTGAACACAGTAGCTACCTGGAGCTGAAGCGCTTTGTGCAGTGGCTGCGGCCACTGAAGATCATTCCCACAGTGAACGTGGGCAGTTGGAGCAGCAGGAAGGCCATGACCAACTGCTTCAGTGAGTGGCAAGCAGAGGTTAAAGCTCTAAATGTTGGACCAAGGAGTGACCATAAAAAAGGCTCCTGTACAAGATAGTAACTGATCACTGCCTCACCACAGATCAGCGTTTGGCCAAGTAGTCAAATTGTGTATTCAGATCCCAAAGGCAAGCCTGGTTATAAGCATAATCTTCTCATTTAGAGCAATGCAGAAGAAAATTTGGAACCAcggttttagtgtgtgtttttaaattgttgccTTTGCAGTTTTACATTGGTGCCATTCCTCATTCTGGTACAGAAACAAATGTCATTGTTTATCTCAAGTTACCAATCAAAGTAATTAGTAATGAATGCACTAAATCTGAGGTTCATTCTGAGGTGGACTATTCTGTTCCAATACATTTCCTGTGCCATAACTCTATCATTGTCtatgaatgttttaaatgtttaaaatatgcaaatatgtgcaaataaatcttttaaataatgAG

Function

GO: NA

KEGG:

id description
K15340 DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402861.2 lncRNA upstream 100464 13063864 ~ 13066622 (+) True LOC113527319
TU231613 lncRNA upstream 203843 12958940 ~ 12963243 (+) False ablim1b
TU231526 lncRNA upstream 322525 12844325 ~ 12844561 (+) True G195512
TU231306 lncRNA upstream 508763 12658105 ~ 12658323 (+) True G195301
TU231292 lncRNA upstream 523560 12643268 ~ 12643526 (+) True G195287
TU231926 lncRNA downstream 288843 13466765 ~ 13466983 (+) True G195839
TU231948 lncRNA downstream 336754 13514676 ~ 13517886 (+) True G195847
TU231960 lncRNA downstream 440742 13618664 ~ 13618939 (+) True G195857
TU232108 lncRNA downstream 515793 13693715 ~ 13695761 (+) True G195994
TU232344 lncRNA downstream 835651 14013573 ~ 14016247 (+) False tha1
XM_034309494.1 mRNA upstream 11089 13145880 ~ 13155997 (+) True dclre1a
XM_026914892.2 mRNA upstream 54081 13091186 ~ 13113005 (+) True ccdc186
XM_026914981.2 mRNA upstream 110311 13025631 ~ 13056775 (+) True afap1l2
XM_026915755.2 mRNA upstream 145091 12979040 ~ 13021995 (+) False ablim1b
XM_026915034.2 mRNA downstream 15102 13193024 ~ 13195130 (+) True si:ch211-28p3.4
XM_026915025.2 mRNA downstream 26404 13204326 ~ 13219416 (+) True nrap
XM_034309093.1 mRNA downstream 149778 13327700 ~ 13331070 (+) True tectb
XM_026915214.2 mRNA downstream 149778 13327700 ~ 13330408 (+) False tectb
XM_026915210.2 mRNA downstream 163653 13341575 ~ 13350475 (+) True acsl5
TU231182 other upstream 693347 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 1880818 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 3102460 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 3532019 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 3653251 9513764 ~ 9513835 (+) True trnaq-cug_15
XR_004579176.1 other downstream 305379 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 305379 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 3677848 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 4399361 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 4977229 18155151 ~ 18158629 (+) False pde6gb

Expression Profile