RNA id: XM_026915034.2


Basic Information

Item Value
RNA id XM_026915034.2
length 1440
RNA type mRNA
GC content 0.48
exon number 6
gene id si:ch211-28p3.4
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13193024 ~ 13195130 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGAAGAACAATTGGACAGCAGCGTTCAGAGAGGCTTGTTCTCTCTACAACACTTAAAACTACTATGTGGCCAGATTTACAGACCTTAGTGACAGAAATGGAATATTTCCCAGGGCACAAGGACAGTAGGTACAATAACGGACACCACAAAACCCAAACCCCCGCCTTCGCCTGCCAGCAAAGGAATATAAAAGCTGGAGGCTGGGGGCTTGTGATGAGGAATCCTTTGCTGGTAAAgtgggagagaggaagagttAATGTTAGACTATTTTTGTGGAGCACTTTCTTCTGGACATTGAGGAGCTGACGATTTATTGTGGCTATGAAGACTCAATCTCAGGACACTCCTGTAAAACAGCAGGAGCACTTGAAAAAGCAAAGGGATATTCTTgcttacagaataaaaaaactgtCTGCAAAGCAAGAGCATTTCATTGAAAAGACAGCAGCACTAAAAGAAAAGATTAGGAAGAAGTATGATGACATGAAGCGAGTGCTGGATGAGGACCTGCGAATCACAATGTGCCAGCTAGACATGGAGCAGGAGGCTATGGAGAGATCCACTGAGGAGAACATTGAAAGGTGCTACCAACTAACACAGGACCTGGAGCAGCTGTCTGAGACCGTCAAACAGCTGGACCAAGACAAAGCACAAAACTTGGACCAGaTTTCAGAGACAGATAGAAGGATAATGGAGACTCTGAAGATGACGGATCCAGAGTGTATCCAAATGGATGAGTTTAAGAACGAGCAGTTGCTAAGTTTAACTATTAATTTACTGCTGTTCATCCGCTCACAGGTtcctgttaccaagaaactCTTCCAGAGCTATGCTCAAGAGGTGGTTCTGAACCCTGATTCTGCTCATCCGAAACTCATCATTTCCCCAGCAGGAGACTCAGTTACATACACGGACACCTGGCAGGAAGTTCCAGAAAACCCGTCCCGCTTTGACACCACCCTGAACGTGATAAGTGAAGAGGGTTTCAAAGAAGGGCGCAATTACTGGGAGGTGCAGGTCAGTGGCAAAACCTACTGGGAGTTGGGACTCACCTATCCCAGCATCCCCAGGAAGGGTCGTGAGGAGCAATGCTGGCTGGGCCGTGGACCTGAGTCCTGGTGTGTGGAATACTTTAATGGTGACTACACAGCTTGGCACAATGGGGTTCCCCATGAGCTCACTCATTTAACCGGGAGGCAATTCCAACATATCGGGGTCTTCTCAAGCTCATTTGGGGGTCTGGTGTGTTTCCTTGGCGCAGACACCATGACCCCACTCTACAGCTTTTGTGTAGGCACATTTACAGACGTACTTCATCAAGCCGTCTGTCCTGGCCACGACAACCAGGGGACCAACTGGAAACCAATGCTGATCTGTGATGCCTCCAGGTCTGCGCCCACTCTGTGATGGGAAAACCTGAGAGGGCAGAGACGTCAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402861.2 lncRNA upstream 126402 13063864 ~ 13066622 (+) True LOC113527319
TU231613 lncRNA upstream 229781 12958940 ~ 12963243 (+) False ablim1b
TU231526 lncRNA upstream 348463 12844325 ~ 12844561 (+) True G195512
TU231306 lncRNA upstream 534701 12658105 ~ 12658323 (+) True G195301
TU231292 lncRNA upstream 549498 12643268 ~ 12643526 (+) True G195287
TU231926 lncRNA downstream 271635 13466765 ~ 13466983 (+) True G195839
TU231948 lncRNA downstream 319546 13514676 ~ 13517886 (+) True G195847
TU231960 lncRNA downstream 423534 13618664 ~ 13618939 (+) True G195857
TU232108 lncRNA downstream 498585 13693715 ~ 13695761 (+) True G195994
TU232344 lncRNA downstream 818443 14013573 ~ 14016247 (+) False tha1
XM_026915026.2 mRNA upstream 15102 13167086 ~ 13177922 (+) True LOC113527338
XM_034309494.1 mRNA upstream 37027 13145880 ~ 13155997 (+) True dclre1a
XM_026914892.2 mRNA upstream 80019 13091186 ~ 13113005 (+) True ccdc186
XM_026914981.2 mRNA upstream 136249 13025631 ~ 13056775 (+) True afap1l2
XM_026915760.2 mRNA upstream 171029 12979040 ~ 13021995 (+) False ablim1b
XM_026915025.2 mRNA downstream 9196 13204326 ~ 13219416 (+) True nrap
XM_034309093.1 mRNA downstream 132570 13327700 ~ 13331070 (+) True tectb
XM_026915214.2 mRNA downstream 132570 13327700 ~ 13330408 (+) False tectb
XM_026915210.2 mRNA downstream 146445 13341575 ~ 13350475 (+) True acsl5
XM_026915485.2 mRNA downstream 160722 13355852 ~ 13462044 (+) True vti1a
TU231182 other upstream 719285 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 1906756 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 3128398 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 3557957 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 3679189 9513764 ~ 9513835 (+) True trnaq-cug_15
XR_004579176.1 other downstream 288171 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 288171 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 3660640 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 4382153 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 4960021 18155151 ~ 18158629 (+) False pde6gb

Expression Profile