RNA id: XM_034309063.1


Basic Information

Item Value
RNA id XM_034309063.1
length 2289
RNA type mRNA
GC content 0.45
exon number 12
gene id arsg
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11431921 ~ 11439228 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCATGAACTGGTACTGAAATTATAGATAGGCTTATCTGCTAAACTCTGTGTATGATATGCTGACCTGGTAGCAAGATTTTGCATTCCAAATGGCAgaagctggagtgtgtgtgctgctcttATTTTGCTCCCTGTTCTCAGGACTGGTGTAttacataaactttttttttgaaaatggagGCAAGATGAAAGAAAGgccaaattttattattatcctgGCTGATGATATTGGTTGGGGAGACCTCTGGACAAATGAGTTTGACAATACTACCCCCTGGCTGAATATGTTAAAGCTGGAAGGCAAAAGGTTTACAGACTTCCACTCTCCTGCTTCCACATGTTCCCCCTCGCGTGCGGCACTGCTGACTGGTAGACATGGCTTACGCAATGGGGTCACTCACAATTTTGCAAAGGGGTCTACTGGAGGACTGCCACTTAATGAGACGACATTTGCTCAGCTTCTACGTGATGCTGGCTATTATACTGCCATGATTGGAAAATGGCATCTTGGACACAGTGGTCCCTACCATCCAATCCACAgaggtTTTGAATACTATCTTGGTATTCCGTATAGTAATGACATGGGCTGCACTGACAAGCCTGGCTTTGACCTGCCCAGCTGTTTCCCATGTGAGCAAAGTAAACACAGTAGCAGGAAAGATGGAGGATGTGACACCAAAATAGCATTACCTCTCTTTGAAAATCAGAATATAGTTCAACAACCGCTGGATCTTTGGGATCTCACAGAAAAATACGctaaagcagcagccacacaGATTTTGACTGCAAGGAATAGGGGGCAGCCTTTCCTGCTGTATGTGGCCCTGGCCCATATGCATGTTCCTCTCTTCCATAATCGCTTCCTGAATGTAACTGCAAAGGAAGCTTATTCAGCCAGTCTTAGTGATATGGACAGTTTGGTGGGGAGTATAAAACTTGCAACTGAGGCCTTTCATATGAAGAACACACTTATGTGGTTTACTGGTGATAATGGGCCGTGGGAGCAGAAATGCGAGTTTGCAGGGGGCACTGGACCTTTTCTGGGGAAGTGGCAGACCACCAGAGGTGGAGGCTCAGCCAAGAGGACCACCTGGGAAGGGGGCCATCGAGTTCCATCAGTGGTCGTTTGGCCAGGGAACATATCACCCAACACCACCAGCAATGCCTTGCTGAGtggtATGGATATCTTTTCCACAATCCTCTCCTTAGCCGGTGTGGACTCTCCTTCAGACCGCCGTTATGACGGCATTGATGTAACACACATCCTGGTCAATGGGTCTGATACAGGACATAAGAGTCTCATGCATCCAAACAGCGGGGCAGCAGGGCAGTTTGGAGACCTACAGACTGTCAGACTGGGACATTACAAAGCTTTTTACATTACAGGTGGTGCAGAAGCCTGCGGTGGAGGAAGTGGAAAGCAGGAGCTTCATGATCCCCCTTTGATTTTTAATCTGGACAAGGATGAAGCAGAAGGGTCACCTCTGGACCCAGCCAGCGAAGAGTATCAACTCGTTCTCAAGGAAGTGGAGAGAGAGCGTGAAGTGCTGCTATGGGATATTGCGACAGACAATGTATCTACTGCAGATTACACTGTATCCCAGAGCGCAGTCCCCTGCTGTCAACCACAGAACCCTGCCTGTCGATGCCATAGGCCAAACTAAAATCTTTGACTTTATATACAACTGTTTTTAAGCATAAACTACATGTTGTGTACAGAAGGCATGGAAGAGCACAAAGTCATCCATGCTCCAAGAAGTCAACATGCAAGTGGTTTCAGTGTTTCTAAAAGAATTTACAGTTAGGTAGACTGCAAGAGGACAGCATGGTGGTGTAGTGTTAGCGTTGCCACCTCATAGCGCTAGGGTTCCAGGTTCAATCCTGACctctttgcatgttctccctgtgttcaccTGGGGTTTCGACTGTGTTCTCTGATGTCTTCCCACTGTCCCAAACATGCAGATAAGTGGATAGGCTACACGAAATTGCCGCTAGGTGTTACATCCTATCGAGTGTGAATTCTCCCTCCttgctcccagtgttcccaggatatgcTCTGGATCTGCCATGACTTGCCCAAGATAAAACCAAGATTACTttagaagaatgaatgaatgaaagactgtaagataaatgtgtttatttttcttttatgatgCTGCATTGCAATACAGTCTAATCCCTCAATGACAGTTTTGATATTGTGTACGCAGTTCACACacctttatatataaaagtatatttttgcataaataaaacattaatgaaataaaatattgactggt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008484 sulfuric ester hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230438 lncRNA upstream 54096 11378461 ~ 11379190 (+) True G194571
TU230242 lncRNA upstream 185179 11247763 ~ 11248107 (+) False si:ch73-139e5.4
TU230183 lncRNA upstream 226310 11135232 ~ 11206976 (+) True G194360
TU230204 lncRNA upstream 312736 11120318 ~ 11120550 (+) True G194380
TU230113 lncRNA upstream 337108 11093163 ~ 11096178 (+) True G194293
TU230527 lncRNA downstream 153664 11592892 ~ 11593091 (+) True G194627
TU230523 lncRNA downstream 158302 11597530 ~ 11602441 (+) True G194623
TU230532 lncRNA downstream 175161 11614389 ~ 11621269 (+) True tmem106a
TU230688 lncRNA downstream 279669 11718897 ~ 11719113 (+) True G194748
TU230779 lncRNA downstream 599275 12038503 ~ 12038728 (+) True G194828
XM_026915062.2 mRNA upstream 8550 11421153 ~ 11424736 (+) True LOC113527352
XM_026915061.2 mRNA upstream 8550 11421153 ~ 11424736 (+) False LOC113527352
XM_026915267.2 mRNA upstream 13215 11414128 ~ 11420071 (+) True gna13a
XM_026914508.2 mRNA upstream 59018 11355205 ~ 11374268 (+) False shisa8b
XM_026915492.2 mRNA downstream 9430 11448658 ~ 11454978 (+) False si:dkey-220f10.4
XM_034309062.1 mRNA downstream 9430 11448658 ~ 11454977 (+) False si:dkey-220f10.4
XM_026915491.2 mRNA downstream 9430 11448658 ~ 11454976 (+) True si:dkey-220f10.4
XM_034309517.1 mRNA downstream 18124 11457352 ~ 11466041 (+) True stx4
XM_034309519.1 mRNA downstream 18124 11457352 ~ 11466041 (+) False stx4
trnaq-cug_16 other upstream 147018 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 1368660 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1798219 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1919451 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1920655 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 1033455 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2044073 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2044073 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5416542 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 6138055 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile