RNA id: XM_026915061.2


Basic Information

Item Value
RNA id XM_026915061.2
length 2013
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC113527352
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11421153 ~ 11424736 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGTCATACTGACGTCAAAGCCTATATGGTAGAGTCTTGCTTTGACGTAGTGTTTACGTGTTGCTGTGGGGTTTCTGGCGACTTTCGTAACAGTTTGGATATTTGATCTGAACTCCTGGGCGAATGTGATTTTGTTTGGCTGTTCTGTCCATTGGCATGGCGGGTCATTAATTTATTGGCGAATGAAAAGCATATTCCGAAAGGAGTTCTAATATCACTGTGGGAAAGTCCAGTAGATTCATATGCCTCCACGTTTTCTGTGCATATTGTTTTGATTGGCTGTTATTGTTGTGCAAGTCAATATCTACTCTTGCACCAAAAGCTGCAGAGAGCAGAGAGTCACACTTCAACAACATGTGACGTTAAAGATCATTATCAGAACTGTGAAGTTTGATCCATAGATCTTGAAGGTCTTCAGCTCACTAGCATAGAACCATAACTGCTGAgataacacactccagatgcAGTGCCTAGAACATCCTGTGGAGAAGCTGCGCTCAGTTCTCCTCTCCACTCGTAAGGACCTGGTAGAGGCCTATGAGcagtacagcagagaggaaAAGTGGTTTCTTGAGGAGGGTCTCCTCCCTGGCAGTTCACTTTTCACTGCCATCACTGTTCACTCTGATTCTGACTGGATTCCTGCCCACCCTGAAGCTCCTCAGGACTTCCAGAGCTTCTACAGCAACCCATACCGCAGCACACCCGACACAGGCCACAAGACCATTTACATTCAAACTATTGGATCCTTTGGGGATGGAGCTGGGATCACTGAGCAGTATGTGGAGTGGCTGAGGGAATACTGTGAGGCGTTTTACTATGGACTGGTGGTCAAGCTCTTACCAGCAGTGACCGTTGCAGCCACCAGCTGCACATTTCGTGTCAACAGCAACACAAATAACCTGCAGCTTCATGCTGGAGATCTGTTGGCGTTTTTGAAAAAGAGGAAGCCAAAAGATGCATTTTGCATTGTTGGGATCACCATGATTGATTTGTACCCAAAAGACTCCTGGAATTTTGTCTTTGGTCAAGCATCTCTCACTGAAGGAATGGGGGTTTTCAGCTTTGCTAGGTATGATGATGATTTCTACAAAAGGAATTATGCCGGGCGGCTGAAGAAGGCGATAAAACTGAAGCCAGGGGATTACAGTATATTCCAGGGCTACTACACACCTCTCATTAGCAGCACTCTGCTCCTCCGCTCGTGTAAGACCCTGACTCATGAGATTGGGCACATATTTGGTGTCAAGCACTGCCAATGGCTCCAGTGTGTTATGCAAGGCTCCAACCATTTAGAGGAATCAGATCGTCGTCCACTAGACCTGTGCCCCATCTGCCTCAGGAAACTGCAGTGTGCCATTGGTTTTAAGATTGCAGACAGGTACAAGGCTTTGCTACAATGGATAGAGAATGGAACTGGAAGCTCTGACCATCAGTCAGGCAAACCCACACAGGCTTTCCAAGACTTCAGACAGTGGTTATGTAAGTGTTTGAGCATGTTGGgagataaaacattttaactcTCTTACATGTTAGTAAGaacaataaacagaaatgatatttaatgTATGGTAGATATGTTGTGTTTAGATCAGACAAGATTGCActatttttctgtgtaaaaactttaatgtaaataacagATGTTGAATTCAAATTTTACTACAAAAATATGacttttaaatgtataacaCTTAGCTTAGATTTGCCTGAAATATATAacgttaaattaaaaatgtaaaaagtttcaTTGTGTGAAAAACATAGTGCTATTCCAGACACATAAAATCATACTTTGTGAATGTACTCTATAAGCACTTCCTTTCCAAACATACAAAATGTCTAGTAACGATAGTTATATAATAGTTGTATAAGTTATAGTATTTCTAGTACAGTTGGAatgatgagattttttttctttgaattaAACTGCAGCTGTAGTTTTCACATTACTGGCACAGTCATTGTAAAAGCATTGCATTAGATTCAAATAAAATGATACTCACATTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230438 lncRNA upstream 41963 11378461 ~ 11379190 (+) True G194571
TU230242 lncRNA upstream 173046 11247763 ~ 11248107 (+) False si:ch73-139e5.4
TU230183 lncRNA upstream 214177 11135232 ~ 11206976 (+) True G194360
TU230204 lncRNA upstream 300603 11120318 ~ 11120550 (+) True G194380
TU230113 lncRNA upstream 324975 11093163 ~ 11096178 (+) True G194293
TU230527 lncRNA downstream 168156 11592892 ~ 11593091 (+) True G194627
TU230523 lncRNA downstream 172794 11597530 ~ 11602441 (+) True G194623
TU230532 lncRNA downstream 189653 11614389 ~ 11621269 (+) True tmem106a
TU230688 lncRNA downstream 294161 11718897 ~ 11719113 (+) True G194748
TU230779 lncRNA downstream 613767 12038503 ~ 12038728 (+) True G194828
XM_026915267.2 mRNA upstream 1082 11414128 ~ 11420071 (+) True gna13a
XM_026914507.2 mRNA upstream 46885 11355205 ~ 11374268 (+) True shisa8b
XM_026914508.2 mRNA upstream 46885 11355205 ~ 11374268 (+) False shisa8b
XM_026914509.2 mRNA upstream 46885 11355205 ~ 11374268 (+) False shisa8b
XM_026915301.2 mRNA upstream 78069 11339017 ~ 11343084 (+) True desi1b
XM_026915057.2 mRNA downstream 7185 11431921 ~ 11439228 (+) False arsg
XM_026915056.2 mRNA downstream 8440 11433176 ~ 11439228 (+) False arsg
XM_026915058.2 mRNA downstream 8448 11433184 ~ 11439227 (+) False arsg
XM_034309063.1 mRNA downstream 8550 11433286 ~ 11439228 (+) False arsg
XM_026915055.2 mRNA downstream 8574 11433310 ~ 11439228 (+) True arsg
trnaq-cug_16 other upstream 134885 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 1356527 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1786086 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1907318 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1908522 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 1047947 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2058565 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2058565 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5431034 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 6152547 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile