RNA id: XM_026915075.2


Basic Information

Item Value
RNA id XM_026915075.2
length 1993
RNA type mRNA
GC content 0.42
exon number 14
gene id meiob
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10647273 ~ 10651361 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACCCGCTACAACAATaaaagatgttttaaaaaagtcactTTTGTCTTTTGGAAATACACGGTATCATATAATTTGCTGGTATAATATCACAGACGGCACACTTCATCACCAAACCGGGAACTTTCCATCAGCACTTCTGAGGCGCCGTCAGTGGCGCGCGCGAGCTCAGTGGCGCTACACCTCCAGATAGCAATTAGCTAATAGTGACAGGTTTGTCTTGACCATTTCTGctttagGTCGAAAGATGGAACATGTTTCTACACACAACAGTGTTTCAATATCAGACCTGAGCCCGAATATCACACGTCCGAATGTGGTCGGGATTATCATTGGAAAGACTGATGCAAGAGGATTCCCTGACAGGAAAAATGTTGGTTCAGAACGATTCACTTTTAGCTTTACAATTAAAGACTCACCAGACCATTTCATTAATGTATCTTCATGGGGCACTGAAGAATACATTCAAAGCCTTTGCAGCCATATCAAAATAGGAGATTGTGttgtCATTGAAAATCCTCTTGTTGCTACTAAAGATCCAGAGAAAGAGGACCGATTCTGTCCTTCAACCCCGAGTTTTTACAGATTGTTGGTGACAGAAGCTCACTCAGCCATAAGAATGTGTACAGATTTAGACATGGAAAGTAGACTGCTTTCCCTGTTCCACATACCAGTGAAGGACTCGGGAGATTTCTACTCACTGGGAGACATTACTGCAAATGGACGAAGCCTAGATGGGAACTTCATTAATATTCTAGCTGCTGTGCGATCGATTGGAGAGCCAAAGTACTTCACTACTTCAGATGGGCGAAAAGGGCAGAAGCTAGAGATTAAACTGTTTGATGAAACTTTGACATCCTTCCCTTTCATAtgCTGGGATCGAGAAACAATTCAGTTTGTGCAGACCCTGCCACCACGAGAGACAGTGCTCTTCATAGTGGATGCTCGCATCAGCTTTGATACTTTTCGTAACTGTATGGTGGCAACAGCTACCTCAAAAACAATCATTACTGTGAACCCTGataCATTAGAAGCCAACCAGCTCTTCAGTTATGCCAAGGAATTATCAGAAAGTGAACAGCTAGATGAGCCAGAGATAGAAGTGAATGTTAATGTTCCCTTAGACTCCATTAGTGATGTACTGACAGTGAGTCAAGTTAAAGCCAAAGCCCAAAAAAGCTCTGATGCCTTTTATGGTGTGATATATGGGTTCATAACCACTTTAGGATTAGATTCCTGCATTACTAAAGTCATTCGCAGCAGGTGTGACAGATGCAAATTTCGTGTCCTTGAGGAGATTGAGGTCTGCACTAACGCTGCCTGTCCAAAACAAGGACAAGCAGGTGAAGTCAGTGCAGCCTTTGATCTGCTGGTGGATATCAGTGATCACACAGGTACTCTGCAGAGCTGCAACCTGTCAGGCACAGTTGCTGAGAAAACACTGGGATGTACTTCCAAGGAATTTGTGTGTCTCTCAGAGTCTGATCGGACGGCCATGAAGTGGAAGTTTCTGCTGGAAAGATGCAAAATTTATGTGTTACCATCAACAAAAAGCAAAACTGGCATGAGGACAAGCATCCTGTCTTGCGCCCTTGCCGATCCAGTGGAAGTGAAGCATAGCTTGTCTGTCTTGATCAGCTGAGTGCGAGTTGCTCACCAGTTCTGACTAATAGACACAGGATACGAGTTCAAAGTAGTGTTAGTGTTCTATAACCGAGTCAGgcaatattaatatttgatcTGAAACAAATGTTGTTGACGTGGAAAATATCTTGTTTGTATTCTGTTTTGGTTATATTTgtatacgtatatatatatatacgtatttGTGTATGAAATGTTCTCCTCAAACATTCATTTGCTTTCAGAAGTTGCTCTGGTGGCCCTTTCTCTAAGCCGGAACTATTAAATGTGTTGCGTGTTTCAGTGGGAATGTGTTCGGATGGGCATCGGCTTGGTTTTTGCCATTCttgtaaataaagaatatttaattgA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229853 lncRNA upstream 820 10644938 ~ 10646453 (+) False msrb1b
TU229700 lncRNA upstream 296653 10350199 ~ 10350620 (+) True G193972
TU229536 lncRNA upstream 311026 10325640 ~ 10336247 (+) True G193828
TU229857 lncRNA downstream 8517 10659878 ~ 10660950 (+) True G194087
TU229892 lncRNA downstream 59960 10711321 ~ 10712015 (+) True G194113
TU230004 lncRNA downstream 129302 10780663 ~ 10780884 (+) True G194201
XR_003402886.1 lncRNA downstream 137406 10788767 ~ 10790017 (+) True LOC113527761
TU230092 lncRNA downstream 313589 10964950 ~ 10965617 (+) True G194276
XM_034309091.1 mRNA upstream 726 10644826 ~ 10646547 (+) True msrb1b
XM_026914751.2 mRNA upstream 2689 10641964 ~ 10644584 (+) True neurl2
XM_026914913.1 mRNA upstream 25770 10620034 ~ 10621503 (+) True rnf151
XM_026915620.2 mRNA upstream 30536 10611415 ~ 10616737 (+) True noxo1b
XM_026915794.2 mRNA upstream 77584 10567499 ~ 10569689 (+) True foxl3
XM_026915965.2 mRNA downstream 17819 10669180 ~ 10690023 (+) False grid2ipb
XM_026915961.2 mRNA downstream 17820 10669181 ~ 10690023 (+) True grid2ipb
XM_026915962.2 mRNA downstream 17820 10669181 ~ 10690023 (+) False grid2ipb
XM_026915348.2 mRNA downstream 39187 10690548 ~ 10693499 (+) True LOC113527483
XM_026914588.2 mRNA downstream 62453 10713814 ~ 10720682 (+) False lcmt1
trnal-aag_8 other upstream 582647 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1012206 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1133438 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1134642 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 1135033 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 634836 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 1821322 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2831940 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2831940 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 6204409 16855770 ~ 16863495 (+) False anapc16

Expression Profile