RNA id: XM_026915079.2


Basic Information

Item Value
RNA id XM_026915079.2
length 2035
RNA type mRNA
GC content 0.42
exon number 9
gene id mlst8
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10651288 ~ 10655032 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCAGTGGGAATGTGTTCGGATGGGCATCGGCTTGGTTTTTGCCATTCttgtaaataaagaatatttaattgACGGTGTCTTTTAACATTCTcgcattatttctttattcagcCGGGATTGATCGTGCATCTGCTAACAGCTTTCTGCAGTTGAGCAAACAGTGGGTCAGGACTACAGAGGTTAACCATGAATGTAAACCAAGGCACAGTCGGGAGTGACCCAGTGATCCTGGCCACCGCTGGATATGACCACACAGTGCGGTTCTGGCAGGCACACAGTGGGATCTGCACCAGAACAGTACAGCACCAGGACTCTCAGGTGAATTCACTAGAAGTAACACCTGATAGGAGCATGATTGCAGCAGCTGGTTATCAGCACATACGCATGTATGACCTCAACTCAAACAATCCAAATCCCGTAATCAATTACGATGGCGTTAGCAAAAACATCACATCAGTTGGCTTCCATGAGGATGGCAGATGGATGTACACTGGAGGAGAAGACTGCATGGCACGCATCTGGGATCTAAGgTCAAGAAATTTACAGTGTCAAAGGATCTTCCAGGTCAACGCACCCATTAACTGTGTGTGCCTTCATCCAAACCAAgctgAATTGTTTGTTGGAGATCAAAGTGGTGTGATCCACGTCTGGGATCTTAAAACAGACCATAACGAACAGCTCATCCCAGAGCCAGAGGTGTCTGTCAACTCTGTGCACATTGACCCCGATGCTAGCTACATGGCTGCTGTCAATAGCTCTGGCAACTGTTACGTGTGGAATTTGGCTGGAGGAATCGGTGATGAGGTGACGCAGCTTATTCCCAAAACCAAAATCCCTGCTCACAAACGCTACTCTTTGCGCTGTAAATTTAGTCCTGATTCCACATTGCTGGCTACCTGCTCAGCAGACCAGACATGTAAGATCTGGAGGACTTCAAACTTCTCACTGATGACAGAGCTGAGCATTAAGAGCAACAACCCTGGAGAGACCTCTCGTGGCTGGATGTGGGATTGTGCCTTCTCTGGAGACTCACAGTACATTGTCACAGCCTCTTCAGATAATTTGGCACGTCTGTGGTGTGTAGAGACAGGGGAAATCAAGCGTGAGTACAGTGGGCATCAGAAGGCTGTGGTGTGTCTGGCCTTCAATGACAGTGTGCTTGGTTAAATCAAACAGTCTGCCATCATCTCCCATTCTGATGAAGTAGGCAGCAGGACTGTTTACTGTCACAAGTTTTACAGCCTGGAGTACTACATCAGGACAACATAAGGTTAAACTATAAGTGACAGAAATGgtaaatattattttgcttGTTATTGAAATTGTAATGTATTATTGTTTGTGTATAACTACactgtttatgaaaaaaaagaacattaatcAGTCCGCTGTGAAGGGAACATCAAAGAACATGCAAGACTGCAGCTTGGGATGTCCGATTTTGATTCAGCAGGCATCCTGCTAAATAGAGTGTATTAATGACCACCTTTAGAAATACAAAGCAGTATCAGGATACACAGGGAAGTACTTAATTGTGCAACCATAGTACCACCTCTAAGGAAAGTCTGGTATagaaactgaataataataatcacaatgtTAAATAGGATTTATGTATGATTGGTCTTATTTCTAAAAGGTATATGCTATTTAAATATCCAggtggtaaaaaaaattataaaacacagGAAGAAAATAGTGTTAAAAATAGCAATACAAGGATTTTGAGTGTATGAGGAACATATAACTCCATCTCAAAATATGCATTTGTGATATGCGTACCTTTGCTGCTGAACTAATATCCTCTTCAGATATTTTTGTCCTATAAGTGGATGAGTTATTAAACAGCATTCCACAAGGTTTGAAACTGCTCTCATGACCTAAAGGTATCCAATCATTTAAATACTGGTTCACCACATGTTGCCTGGGGTTTggtattttcttttccttacaCATCTTTCTTGCTTCCTCATCTGTATATAACCACAAGTTTGTAAATACAATCTATGTCAGtaaaacactgatttaacaGA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K08266 MLST8, GBL; target of rapamycin complex subunit LST8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229853 lncRNA upstream 4835 10644938 ~ 10646453 (+) False msrb1b
TU229700 lncRNA upstream 300668 10350199 ~ 10350620 (+) True G193972
TU229536 lncRNA upstream 315041 10325640 ~ 10336247 (+) True G193828
TU229857 lncRNA downstream 4846 10659878 ~ 10660950 (+) True G194087
TU229892 lncRNA downstream 56289 10711321 ~ 10712015 (+) True G194113
TU230004 lncRNA downstream 125631 10780663 ~ 10780884 (+) True G194201
XR_003402886.1 lncRNA downstream 133735 10788767 ~ 10790017 (+) True LOC113527761
TU230092 lncRNA downstream 309918 10964950 ~ 10965617 (+) True G194276
XM_034309091.1 mRNA upstream 4741 10644826 ~ 10646547 (+) True msrb1b
XM_026914751.2 mRNA upstream 6704 10641964 ~ 10644584 (+) True neurl2
XM_026914913.1 mRNA upstream 29785 10620034 ~ 10621503 (+) True rnf151
XM_026915620.2 mRNA upstream 34551 10611415 ~ 10616737 (+) True noxo1b
XM_026915794.2 mRNA upstream 81599 10567499 ~ 10569689 (+) True foxl3
XM_026915965.2 mRNA downstream 14148 10669180 ~ 10690023 (+) False grid2ipb
XM_026915961.2 mRNA downstream 14149 10669181 ~ 10690023 (+) True grid2ipb
XM_026915962.2 mRNA downstream 14149 10669181 ~ 10690023 (+) False grid2ipb
XM_026915348.2 mRNA downstream 35516 10690548 ~ 10693499 (+) True LOC113527483
XM_026914588.2 mRNA downstream 58782 10713814 ~ 10720682 (+) False lcmt1
trnal-aag_8 other upstream 586662 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1016221 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1137453 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1138657 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 1139048 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 631165 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 1817651 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2828269 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2828269 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 6200738 16855770 ~ 16863495 (+) False anapc16

Expression Profile