RNA id: XM_026915082.2


Basic Information

Item Value
RNA id XM_026915082.2
length 4202
RNA type mRNA
GC content 0.50
exon number 23
gene id LOC113527360
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9040824 ~ 9090546 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAATCCAGTGCAGCAGTGTCCACACGCAGAGATGAGGGAGCGAGAGGAGCTGAAGAAAGCCATCGAGCAGAGCGACAGGCTGCTGTCTCGCGTCCGCCAGCTGGAGGAGGAGAACGCTGGACTCAGCAAGGAAAAGAATGACACTTTCACTAAGATGCGTGCTGAGCAGGAGGCACTGCAGCAGGCAGAGCAGCGTTGTGCACAGTTGGTCCAGGCCAGACGTGAGCTGGAGGCTCAGGTGGCTCAGCTTGAATTGCGTGTAGAGCAGGAGGAGGACGCCAGCTCTCAGCTCGCTTCACAGCGTCACACACTCCAGGCTGAGTGCTGCAGCCTGCGCCAAGACCTAGAGGAGCTGGAGAGTGCACTCAGCGCAGTGGAGAAGGATAAACAGgctTCAGACTGCACAGTGAGAAAGCTAACAGAGGAGCTCTCCCAGAGTGAGGTACTGGTGCAGAAGTTCCAGAAAGAGAAGGAGCATTTAGCAGATCTCAGTGAGAAAGCCATTGAGGACCTACAGTTTGAGGAGGAGAAGGTGAACCTCTTGACTAAAGAGAAAGCGAAGTTACAGGTACACGTCGAGGAGTTGGAGTACCAGCTGGAACAGGAGAGGAAGCAGCGCACTGAGCTGGAAAGGAGCAGGAGGAAGTTAGAGGGAGACAGTAAGAACACCATGGAGAACCTCAGCGAGCTGGGCAAGATGAGGGCCAACCTGGAGGAGCTCATCAAAAAGAGAGATGTGGAGATTAGTGACACCAGCAGCCGGCTGGAGGCCGAGGAGGCACTGAGTGCAGGGCTCCAGAAGAAGAATAAGGAGTTGCAGGTCCGCATTGAGGAACTGGAGGAAGAGCTGGAGGCAGAGAGAGCCATAAGAGTGAAGGTAGAAAAGCAGCGCTCTGACCTGACTCGAGAACTGGATGATCTGACAGACCGGCTGGAGGAGGCAGGAGGTGTCACAGCCTCTCAGATGGAGATGAATAAGAAGCGTGAGGTGGAGCTGCAGAGACTGAGGCGTGAGCTGGAGGAGTCCTCGGCTCAGGCTGAAACGATGGCGGTGGCTCTGAGGAAGAGACATGGAGATTCACTGGCTGAGCTGAGCGAGCAGTGTGAGGGCCTGCAGAGGACTCGTGCCAAACTAGAGAAGGAGAAACAAAACCTGCTGCTGGAGGTGGATGACCTGGCAGCTTCACTAGACACCATGCAAAAGGCCAAGGCGTCCACTGACACGCAGCTGAAGAAACTGGAGGACTTGCTGTCTGAAGCCAACTCGAGGAATGAAGACCTGCAGAAAGCTCTCACTGAGGTCACTGTGGCCAAGAACAGACTGACAGCTGACAATAATGAGCTGAGCAGGCAGATggaggagacagagacaaaacTCAGCCAGATAAGCCGCTCTAAAAGCCTGCTGATTGCACAGCACGAGGAGCTCAAGAAACAGTGTGATGAAGAGGTCAAGagtAAAGCAAcactgagcagcagtttggCAGCAGTGCGACAGGAGAATGAGTCGCTGAAGGAGCAGCTGGAGGAGGAACAGGAGAGCAAACTGGAGCTGCAGCGCCTCGTCTCCAAGCTTAACAGTGACGTCACACACTGGAGGAGCCGCCACGAGGCCGACTCTATCCAACACAGTGATGAACTAGAGGAGGCCAAGAAAAAGCTGCAGTCTCGGCTGCAGGAGGCTGAGGAAGCTGTAGAGGCCACGCAGGCCAAGTGCTCCAGCCTGGAAAAAACCAAGCAGAGGCTGcagatggaggtggaggagcTCTGTTTGGACCTGGAAAAGGCCAACAATGCAGCAGCGGTGCTGGATAAGAAGCAGCGAATGCTGGACAAGCAGCTGGGAGACTGGAGGCAGAAGTGTGAGGAGCTGCTGGCTGAGGTGGAAAGCTGTCAGAAAGAGAGCAGGCAGCATGCTGCCGAGCTCTTCAAGCTCAAAACAGCCTATGAGGAGTCTGTGGAGCAGAACGAAGCTCTACGCAGGGAGAACAAGGCCTTCCAAGaagaaattgctgatctcacTGACCAACTTTCGGATGGGGGGAAGAGTGTTCATGAGCtccagaaaatgaaaaagaagattGAGATGGAGAAAGAAGAACTGCAGGCTTCACTGGAGGAGTCTGAGGCAGCATTAGAGGCTGAGGAGACTAAAGTTCTTCGGCTGCAGCTGGAGCTTTCTCAAGCCAAAGCAGACATTGAGCGCAGACtgcaggagaaagaggaggagatggaggctGCCAGGAAAATCCACCAGAGGGCGCTAGAGTCTCTCCAGGCCAGTTTGGATGTGGAGGTGAAGGCACGGACAGAGGGAGCACGtctgaagaagaagatggagagCGAAATAAATGAGCTGGAGTTACAGATGGACCTGCTCAACAAGAACAACGCAGAGCTGACGAAGACTGTCAAAAAGATGCAACAACAGATCAAGGACCTGCAGGTTCAGCTGGAAGAGGAAGCGCGGGTGCAGGAGGAGTTGAGAGAGGAACAGGCTCTGCTGGAGAGACGCTGCACTCTGCTGGTCACTGAGGGAGAGGAGAACCGCACCGGGCTCGAGGCAGCAGAGAGAGCTCGCAAAACCCTGGAGACTGAGCTCCAAGAGGCCACGGAGAAATATAACGACATCAACAACCAGTTACAGTCAGCCTGCAGCGGGAAGCGGAAACTGGAGGTAGAGCTTCAGCAGGTCACCCAGGAGCACGAGGAGCTGCAGAATGAACTGAGAGGAGCTAATGATAAGATCAAGAAAGCTGTATGTGAGaCTGCGCGAGTGGCTGAGGAGCTGCGGGTGGAGCAGGAGCACAGTATGCATATAGAGCGTGTGAAGAAGGGCTTGGAGGTTCAGCTAAAAGACATGACTGTCAGACTGGATGAGGCCGAGCAGCTGGCCatgaaaggaggaaaaaagattaTTCAGAAGCTGGAAGGCAGGGTGAAGGAGTTGGAGCTGGATTTGGAAACAGAGCAGAAAAAGTATGCAGAGACGGTGAAGACGCTGCGGAAGAATGAACGGCGCCTCAAGGAGCTCCTCTTCCAGTCTGAGGAGGACCAGAAGAACCAGCAGAGAATGCAGGAGCTGCTGGAACGCCTGCAGATCAAAATGAAAACCTATAAGAGACAAGTGGAGGAGGCGGAGGAGCAGGCCAACGTAAACCTAGCCAAGTACAGAAAGACCGTACATGAGCTGGATGACGCAGAGGAGCGAGCAGACATAGCCGAATCTGCCCTCACGAAGATCAGGACCAAGAATAGAGGCAGCTTTGGCAAGGGCTACTCATCAGGTTACAGCACTCCATACGCAGGAGTGGTACGATCCCCCAGCTCTGTGGGGTCAGAAGGCAGAGGTGAGAAGATCCTCACTGATGACGATGAGTCAGTCAGTTCTCTCATCCCCACTTATCTCAATTCCCTGAAAAAACTGATGATTgactaaaaatattttgatctGCTGGTCACACATTTATATTCTCAGTATTATCTTTTTTTACTTAAACTACAGTGTGTGCTGTAAATAATTGGTCAGTGACAGTTTAGTTGTTTTGGCTGCGTACTCATGCACACTGGATCTGAAATAAATCACCAATGAGAgccttaaataaaatgaactccATCTCTATTGCCTGAATCATATAGGAAACATTTGGCCAGCTGTGTGTCGTTGCACTATTAGTTCATACACAGAGGAGCTAACCacgtttttttttactgcagatGAGGTGTTTACTTTTAGCaccatttgctgtttttttgaaTGTGAAGACCAAAGAAACAGGACATCATGAATCTGAAATATCAGAATAAAACTATCATAGACAAAGCCAAAGCAACAATATTGTATGACTGTCCAATTATTCGATTATTTTTCTTGTTGCCAGAACTTTATTCTGAAATGCCAGTAATGTTCTTTTAAAATTACCACAATTGATAGGAGTAATCAGGAGTAAATATTTGATTAgtctctaattattattattattattatttttttttattttttattttttttaaacagttatatAAACCAATTgagtatttaaaaacatatcacTTATACCGGCAAAGAGTGCTTTTTGCACGTTTACTTACCAGTTTTGCAAGTATGCAAGTTTATGAACAATCTCTAATGTCAGGAAATAAATGGATTACtaagtgaatttttaaaaatgtatcactgtattaataatactgtatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228350 lncRNA upstream 129122 8918040 ~ 8918245 (+) True G192858
XR_004579293.1 lncRNA upstream 445597 8596654 ~ 8601770 (+) True LOC117598667
TU228231 lncRNA upstream 531433 8514382 ~ 8515934 (+) True G192760
TU228197 lncRNA upstream 659250 8310878 ~ 8388117 (+) True G192737
TU228175 lncRNA upstream 777141 8269148 ~ 8270226 (+) True G192716
TU228721 lncRNA downstream 67613 9158159 ~ 9158568 (+) True G193169
TU228720 lncRNA downstream 68887 9159433 ~ 9184089 (+) True G193168
TU228956 lncRNA downstream 288727 9379273 ~ 9380115 (+) True G193386
TU228960 lncRNA downstream 295597 9386143 ~ 9386394 (+) True G193390
TU229030 lncRNA downstream 421639 9512185 ~ 9512401 (+) True trnaq-cug_13
XM_026915517.2 mRNA upstream 12197 9030252 ~ 9035170 (+) True pts
XM_026914777.2 mRNA upstream 21808 9013653 ~ 9025559 (+) True LOC113527204
XM_026915891.2 mRNA upstream 106536 8927805 ~ 8940831 (+) True hs3st3l
XM_026914717.2 mRNA upstream 140977 8899010 ~ 8906390 (+) True dhrs7cb
XM_026914487.2 mRNA upstream 200686 8836049 ~ 8846681 (+) True bsk146
XM_034309073.1 mRNA downstream 44657 9135203 ~ 9139400 (+) False adprm
XM_026914689.2 mRNA downstream 44674 9135220 ~ 9139400 (+) True adprm
XM_026914687.2 mRNA downstream 51955 9142501 ~ 9156288 (+) True map2k4b
XM_034309459.1 mRNA downstream 177947 9268493 ~ 9357961 (+) True LOC113527534
XM_034309460.1 mRNA downstream 225432 9315978 ~ 9357961 (+) False LOC113527534
TU227843 other upstream 1419256 7605981 ~ 7628111 (+) True G192484
TU227741 other upstream 1610995 7428579 ~ 7436372 (+) True tfam
XR_003402840.2 other upstream 2213110 6822740 ~ 6834257 (+) False asah2
trnap-cgg_7 other upstream 2257422 6789874 ~ 6789945 (+) True trnap-cgg_7
trnap-ugg_20 other upstream 2258601 6788695 ~ 6788766 (+) True trnap-ugg_20
trnaa-ugc_7 other downstream 17140 9107686 ~ 9107757 (+) True trnaa-ugc_7
trnal-aag_6 other downstream 17306 9107852 ~ 9107933 (+) True trnal-aag_6
trnad-guc_4 other downstream 174228 9264774 ~ 9264845 (+) True trnad-guc_4
trnad-guc_5 other downstream 175717 9266263 ~ 9266334 (+) True trnad-guc_5
TU228915 other downstream 178096 9268642 ~ 9271331 (+) False LOC113527534

Expression Profile