RNA id: XM_026915088.2


Basic Information

Item Value
RNA id XM_026915088.2
length 8925
RNA type mRNA
GC content 0.53
exon number 27
gene id jmjd1cb
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8021534 ~ 8141060 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGAGCGGCTATTTGCGGGCGGAGGCTGAAAGAAATTTAAATCCCCCCTCCGGGTTGCGGTCGACACGCACACCGACAAGATTCTTGCCTtcgtttttttaaatttctttctttttttttttttcttttgttctgtttaCCAGTTCTCCCGTAGTCAATGTCCGATCGGTAGGGCGTCGGCGCTGAAGTTTCCGAGGGGTTTTTGGCTCTCTCTGTGTGCCTGAAGGGCCatggcggcggcggcggcggcggcggttATGGAGCCGCGGCCGGAGCTGGTGGGGAAGCGGTTCCTGTGCGTGAGCGGAGAGGCGCCGCCGGAGCTCGCGGAGATCGCGCGCTGGCCGTGGCGTGTCGGGGTTATCCGCGCCGTGAGCCACCGCGACACCGACAATCCCGACCTGACGGTATACGTGGAGTTTGATGACCTGGAGTGGGAGAAGCGCGAGTGGGTAAAGGTGTACGAGGACTTCCAGATCTTTCTTCTGGAGCAGCAGCTTGTCTGGGCTAAGAGGAAAGAAGGCTCGCAGCTGCAGGGCACCCGGGCCAAACAGATCCAGTGGCCTGCTCTGACATTCAAGCCTCTGGTAGGAAAGAGTGTTCTGGGCTCCATCACCGCCGTGGAATTCTTCTCCGACAGACAGCTGGACTTCCTGACCGATGACGGAGCATGCCAGCCCTatcagGATGAAGTGGACAGCTTGAGTCCTGTTCTCAGGGACAATCCACAGCTTCATGAAGAAGTGAAAAGCTGGGTAAAAGACCAAAAGGTGCAGGAAATTTTTATGCAAGGTCCTTATTCTTTAAATGGATACCGCGTACGAGTTTACAGGCAAGACTCAGCCACCCAGTGGTTCACGGGCATCATTACTCATCACGATCTCTTCAGCCGCACTATGGTTGTGATGAATGACCAGGTACTAGAGCCTCAGAACGTTGATCCTTCTATGGTACAGATGACCTTTCTGGACAATGTGGTCCATTCTTTGCTGAAAGGAGAAAATATAGGCATCACATCAAGAAGGAGATCACGCTCTAGCCAGAATAGCAACACTGCCCACCAGACCACAGGAGGGAGACCAAGCGGCAACACAGGAAGCACTCAGGGTCATTACACACGTGCCCAGGCCAACAGTCCCAGACCGGTGATGAACTCATCAGGCTCTGCCACCAAGCAGGGTTCACAGGCCCAGCAGCAACAGTCCCAGCATGCTCAGCAGCAGGTATCCcagcagcaccagcagcagCTGCAGTCATCACCAGGGCAACAGCGCGGGTCACGGTCAACACGTAGGAAGGGATCAGATAGCAGTATCCCGGATGAAGAGAAGATCAAAGAGGAAAAGATGGACTCTGGAGGTGGAAGAGGAGATGTTCCTAGGAACAAATCAAAACAGATGGTGAGCAAACGGAGGAAAGCTGAAGACGAGGAGAAGAAGGCTGGCCTTAAACGGATAAAGATGGAGGCATCAGATCTTTCAGAGAGCGACTCTGAGAACTCCAATAAGAGGCTCTTGGACTCATCCTCAGAGCCAAGCTCTGAAAACGAACTGAAAAGTAAGGGCATTTCAAAAACcaatgaggaagaggaaaaatCTCAGAGCTGCAAGGCTCTAGAGGACCCGGACACCAACAGCAGGGTGTCTCCCTGGGAGGAGGTATCTACAGTGGATAAGATTGTCAAGCCGACAGCCATGGAAGTGTTGCCCTCTGCCAAGAGTGAACATACAGGGGAGAGGAGGTCCCCGGTGCAGCCTTCCCCACTGCCCCCTCCCAGCCCCTGTGCACAGCCTCAGAGCTTGGGTTCTACTGAGGTTCAGGGGTGCATTGTGGAAATAAAAAGCACTGTGAAAACTCTGCCCAAGGACCATTATAGCACAGGGGcacccagaacacacacaccaaagtgTGTGATTGACATCACAGAGGACTCCAGCTCCCACCCCACCACCAGAGAGAACTCAGAGGCTGTATCTGCCCTTTTGGCCTCTCAGAAACGTGAAACCTATGTCCCTGAAGTGAGACATTTGGTGCTAAACCCATCAGCCTCTGAATGCAGGAAGCCAGAGGGTGAGCTGCAGCAGCAGCTAGGTCAGAGCTTGGGTAGCAAGATTGAGTTTGCCCACTCTGAGGTGATCCGTCCTGTGGCTTCGGTAAGCGAGTCAGCTGCTGTGGCAGAAAGGGAAAGGGAGAAAGTACAGCAGCAGTACCCTTCAATCATGCCTTGCATCAAGAACGCCTCACTCGCAGAAGATGTGCGAAAGCCACAGAAACTTAGCTCATCACCAGATGTGGCCAAGTCCAAGTCAAACCCTTCACCTGACACATTTAAGCCCAAGTGCAATCCCTCACCTGACGCCATGAAGTCAAAAACCCACAGTGTCCTGGAGGCCATGAAGCCTAAACCAAACACTTCCCCTGAGGTGACCAAACACAAAGGACGACACACCGACAACCCTCCATCCTCTGTTGCCCGGTCAGCAGCCAAACCAGACACAGAAACCCCACGCTCCAGCTTCAAGCCTGTTCCTGCTCGCACCACTCCCTCTGAGTCCACCAAGAGCCCTCTCATCGTCGACAAAAACGAGCACTTCACAGTGTATCGTGACCCGGCACTGGTGCGGCCCGAGGCCGAGACCAACCACGTTACTTACCTTCCTCCCCACCTCCATCCACTCCACAGCTCCTCCCACGCTACTTGCCTGACACCTAGCTCACACCACCACTCCCACCTATTGCCCACCTCTTCCCTCAGCCCACACCCCTCGGTGCACCACCCCTTGCTCCCCACCGTGTTGCCTGCCATGCCGCCGGCCTCTCTGCTGGGTGGCCACCCTCGCCTCGACTCAGGTGGACTCAGTCATCTGGCTCTAGCTCACCACCACCCACACCAGCAACAGCAGTTTCTTCAACAGCAACCGCCCCCTCCGCTGCTGCCCCAGACACATGGTGGTGCCAGCTATAACCAGCTGGGCCTATACCCCATCATCTGGCAGTACCATAATGGCACGCAGCACTCCTATCCACCCGGACTTAGCCTACCTGGGTCAAAGTGGGTGCGTCCAGAGAATTCTGTGAACTCAGATGGTAGCCTGCCAAGGAACACCTCCAGCCCCTGGCTCCATCAGCCCACCCCTGTGACCTCAGCAGACAGCCTCGGGATTCTGAGCCATGTCCCGGGTAGACCAGCCAGCGCTGATCCCCACAGGCCCCTTAAAATCACCTCACACTCCAGCCCACCACTCTCTAAAACATCTGCAGAGCTGCACAAAGgGGAGCTGGAAAGTAAGATGTTTGTAGATCCCATGCGTGGCCTGGTAACAGCCCACCTGAAGCAGGAGCCGGACCGAAGCCGGACACCCAACAGCAAAGAGTTGCAGCGCCTCTACATGGATTCATCTCACGTGAAGCAGCAGACACATCCTCCCCGCCTGCCGCTGGACACGCCAGATCGGGCCGTTAAGTACAAGGAGGAGAACCGCCGCATCCTACAGGAGAGCATTGAGGTGGCCCCCTTTACTGCCAAGATCCGGTCAGGAGAGCCAGAGCGTGAGCCCTATACCCGCATTCCCTCCCTTCCCATTAGTGGACCGCCCAAGGAGAATGAACATTCACCCTCTGATCTTTACAAGTACAAGCACTCTGCTGCTCAGTCACTGCCGCAGAGCAACTATTTCACCACCCTGTCCAACAGTGTGGTGAATGAGCCACCACGTCTCTACCCCTCCAAAGAGCTCAACTCCCTTTCTGTCTCGAGTCCCCTGCCTCTGGGCTCCTACACTGGTGGTGGGGGCAGCGCCAAGTCCCTGTCCAAGCCTCCCCCGCTTATCAAGCACCAGCCAGAGGGTGAGGGCCTGGTGGGGAAGATCAGCGAGCAGCTCAGTCAGCAGGTGGCCCTGAACCCCCTCAGTACCCCAGCGGTAGCCAGTGAATGCCGCAGTCCAGCTGTCTCACCCTCAAACCAACTCAGGAGCATGCCTGCCCTGCACAGGGCACCTGTCTTTCACCCGCCCACCCAGCAAACACTGGACCGCAAGGAGGCTGGCTATGGTCGCCTCTCGCCACCCACGCTCACCCCCATTCAGCCGGTCAGTTTGGCTGGGAAGGTGTCGGAGCAACAGAAACCTCCCACTCTGCTGCCAGAGCTCAGGGAGGTGAAGAGCAATGTAGAGCTGGGCTCCAGCGAGCCATGGAGGCCCAGTTCTGACTCACAGAGCCACGATAAAGTAGCTCAGTGGCACTCAGACAAAAGTCAAGGGAAGCCACAGGCAGCCACAGCCTCTGTTATTGTTCGCTCTAGAACCTGCATTAAGTATGACAGCTCACCGGGTTCCAAGTCTGGCGCCAAGGAGACGTCTGGCAGTAGGCCACATACAGGCAAAAACCAACTGGACTGCACCAAACTGGCTGAGACCAGAGAACCTGGCAGAGTTATCCAGCAAAACACAAATAGGGAGGATATTTTTTTGCAGTACAAAAAGAACTTTGTCCGAGTCTCCCAGGGCAGCCTTCCCAGCTCTTCGGTAGCCGTTGTTAACTCTGTGTGCAATAGCAGTACTGATGTAACCACTTCTGCCTCTGCTGCTTCCACATTCAATGTGCTGAGTCGAGGCACAGCTGAGCTACCTTATCCCAACTCAGCCACTCCAAGCAGCAGTAACATTAATAGACTGGAGGGCCCTTTACCCAAATGCAGGACTCCCACCGGCCCTGAGCTGCAGGAGTGCAATGCCAGGACAGACTCCCCCAGTGGCCAGCTGCCTCAGCCTGGTTTGGCCCAAGCTCCTCAGCCCTACTCTGGGAACTTCATCCACCTGAAGAAGCACAAGGCCGCCCTGGCTGCTGCCCAGTCCCGCGGCTCAAGCAGTGCCTCAGAGAGTGAAGGCAGCTGTCGATCCTCTCAGGAATCTCCCACCATCATCACCCAGGACCGTGCCTCGCCAGGCAATCTGGCCAGCAAAGCCAGCCCCCTACCCAATGGTCAGCCATCACAGATGAACCAGCCCAACTACCACAAGCTGAAAAAAGCATGGCTCACTCGCCACTCTGAGGAAGATCGCAACACTAACAAGGTGGAGAAGACGTCCAGTGCTGTCTGTGAGATCATTAAGCCATGCACGGTGAACCTAGTAGCATCCACCTCCAGCGACGCGGAGATAGGCAAAGATGGCAAATGCTTAGAGGATAAAATAAGCCAGGAGGACAGGAAGCCACGACGAGGTCCCTCCAAGCGGCCACATGAGTCAGGCTCAGAGAGCGGCGATGACTCAGATGGCAGCGACAGCAAGCATGAGCAGAGGGCAAAGAGGCAGCCTAAGCCCACCTACAAGAAGAAGCAGAATGACATGCAAAAGAAGAAAGGGGAAAATGACAAGGACGAGGACGATGTCAAGCCCAATGGCATTTTCAGAAGCGCCAAGGAGAAAACCAAACTCAAATTGGCCAGCAGCAATGGTATTCCTCGCTCAGTGCTGAAAGACTGGAGGAAAGTGAAGAAGCTGAAGCAGACGGGTGAGTCCTTCCTGCAGGACGATTCATGCTCGGAGATCGGCCCCAACCTGCAGAAGTGCCGCGAATGCCGCTCGATCCGCACCAAGAAAGGAGAAGAGCCCACTCACTCTCCCGTCTTCTGCCGCTTCTACTATTTCCGCCGCCTTTCATATAGTAAGAACGGAGTTATCCGGATCGACGGCTTCTCATCCCCTGACCAGCACGACGAGGAGGCCTTGAGTCTCTGGGCTCCAGATGCATATGAAGAGAATGATCTGGACCTGGAAACCTCCAAATACATTCTTAGCTACATCGGAGACAAGTTCTGCCAGCTGGTCATGAGCGAGAAGACTGCAGCCACATGGATAAAGAAAGATGCCAAGATAGCCTGGAAACGGGCGGTGAGGGGGGTGCGTGAGAGCTGCGACGCATGCGAGGCCACATTGTTCAACATTCATTGGGTGTGCCAGAAATGTGGATTTGTGGTGTGCTTGGACTGCTACAAGGCGAAGGAGAAGAAGAGCTCCAAAGACAAAGAGCTGTACGCCTGGCTGAAGTGCGTCAAGGGACAGCCACATGATCACAAGCACTTGATGCCAACGCAGATTATACCAGGAACAGTCTTGACGGACCTGGTAAATGCCATGCACATGCTCAGGGAGACGTTTGGCATCAAAGCGCACTGCGCCTGTGCCAACAAGCAGAACATCCTCAACAAGCTCCCATCCACTAACGGCGTTTCTCAGGTCCTCCAGAACGTGCTGAACCACAGCAACAAGCTTTCCCTGTGCAAGCCTGAGGCTGGCCAGCACAACTTGGGACAGAAGGTGGAGGCGAACGGGGGCAACAGCCCAGCCAGTGATACCAGCACTGATAGCAAGCTCACGCCACCCGAGTCTCAGTCACCACTGCACTTTCTGGCTGACTTGGCCGAGCAGAAATCCCGGGAAGAGAAGAAAGAGAATAAGGAGTCGGCTGCAGGGAAGGTGAAGGAAGAGAGCACAGATGCTCTCGAGACTTTGCACTGTAAAGCTTCATCTCTGGTGGCCAACAGCACGGAGCAGGGCTCCACACTGCGAGACCTGCTCACCACCACGGCTGGAAAACTGCGCTTGGGCTCCACTGACGCCGGCATCGCCTTCGCCCCGGTCTACTCCACAGCCTCACAGACTGGGAAAAGTGGTCGCACTATGCCTAACATCCTGGATGACATCATTGCTTCAGTGGTTGAGAACAAGATACCGGCAGACCGCAGCACTAAGCAGAGCCCAAAGGCTAAACCCCCGGAAGAGGCCAAGGCTGAAAGGAGGAAACAAGCCGAGGACGTTCCTGAGCAGCATGCAGACATCCCCCACTGCTGGCTGTATGATCGTAAACTGCTCTGGCTCAAAGACCACCGCAACAGCAACAACTGGAAACTGTTCAGAGAGTGCTGGAAACAGGGACAGCCTGTGCTCGTCTCAGGGGTTCACAAGAAGCTCAACGCCAGCCTGTGGAAGGCTGAAGCTTTCAGCCAGGAGTTCGCCGACCATCAGGGGGATCTGCTGAACTGCAAGGACGGCGTGGTTTCCAACTCAGGCATCAAAGAGTTCTGGGACGGCTTTGAGGACCTGACAAAACGGCCCAAATCCAGAGATGGCGAGGCGATTGTGTACAGGCTAAAAGACTGGCCCTCGGGCGAAGAGTTTATGGCTCTAATGCCTTCTAGgTATGATGATCTGATGAAGAATCTCCCTCTGCCTGAGTATTCAGACCCAGAGGGGAATTTGAACTTGGCTTCCCATCTCCCCTCGTTCTTTGTGCGACCTGACCTAGGCCCTCGTCTCTGCTGCGCATATGGCGTTGCATCATCTCAGGAGCAGGACTTTGGCACAGCCAACCTGCACATGGAAGTGTCTGACGTTGTCAGCGTGCTTGTTTACGTTGGAGTGGCCAAAGGGAACGGCGTACTCTCCAAAACAGGAGTGCTGAAGAGGCTGGAGGAAGAGGATCTAGATGACAATGTGAAGAAGAGATTAAAGGACTCGAGTGAGACTCCTGGAGCCTTATGGCACGTCTATGCGAGCAAAGACGTGGAGAAAGTTAAAGAATTTCTGCACAAGATCTCCAAAGAGCAGGGTGTGGAGATCCCGCCAGAGCATGATCCAATCAGGGAGCCGGGCTTGTACCTTAGCCGCAAGCAGAGACAGCGTCTGCTTGAGGAGCACGGCGTACAGGGCAGCACCATCGTCCAGTTCCTGGGAGACTCTGTCCTTGTCCCTGCTGGAGCCCTGCACCAGGTGCAGAACCTGCACAGCTGCGTTCAGGTGATCAATGACTTTGTCTCGCCGGAGCACGTGGTGCACTCCTTCCACTTAACCCAGGAGCTGCGCTCCTCCAAAGAGGAAATCAACTACGAAGATAAGCTACAGGTCAAGAACATCTTTTACCACTGCGTAAAGGATGCTGTGGGAACATTAAAGCGGTGCAGTGCTGAGGCccaggaggaagaagaggcgAACTCATGACCCTTCCTCACGCCGCTGTCAGCACGCCTTCATCACTTAACCCCAAATATGCACACTAACCTTCATGTCCTGAACCTCCAGTGCCAAGCAGACTTTaaaagaagacaaaagaaagacaaacattatttatttgttactgACACCACAGCAGTATAGCCCAAACGCATCAGGATAACTGTGATTttacagaaaagaaacaaaaactgaaGATAATCcgcaagcagcagcagcactgctGTTCAAACTTTATTCAAActgtatttgtttgtctgttgttCGGTTCGTTTtttgttcttccttttttcgttttcttttcatactgtatattgtttatgtgaaaatgatgtatttatttttaggagGTCTATGCTCTATGTTCTAGAtcaaatgtaaatgtgactTGTACAGTTTGCTAAATGGGATCCTAACGCAGCTCACTACATTGAGACAGTAACTGTGAGACGGGATCCGAACACCAGCTGTTGCCTGTACTTTTGGGAATCGTTGCTGAAATTGCAGTCCTCATGCCATATCTTTTGAAAAATTTTAACTGCCAAACtattgtaaacattgtaaagtTATATTATGTAAAGAAAGCCTaaatgaataacacacttcagcatTTTATTAAGAAGTATTCACTGTAAAATGGAGACATTTACAAAAAagttgtaatttatttaagacAAATTGtcgtttctttttctctttttttgttaagATTTACTATGTTGAAGTTTTGAAGTTGatgataaaaaaatgaaagacttACTATgctgtgtaaatatatacatatatacattcactgatgtatttttttaaaaacacagcttgcttcaatttcaaattttaaaagtGCAAGTGTTACATGCTTTGTACATTGAAGTTCAAAGGGttttacattttccattaaaatggATTTATCAAA

Function

GO: NA

KEGG:

id description
K11449 JMJD1C; jumonji domain-containing protein 1C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228096 lncRNA downstream 44380 7974214 ~ 7977154 (-) True G192665
TU228097 lncRNA downstream 44469 7974214 ~ 7977065 (-) False G192665
TU228034 lncRNA downstream 143835 7874766 ~ 7877699 (-) True G192611
TU228005 lncRNA downstream 178900 7842060 ~ 7842634 (-) True G192585
TU228004 lncRNA downstream 179587 7841629 ~ 7841947 (-) True G192584
TU228380 lncRNA upstream 238169 8379227 ~ 8383599 (-) True G192881
TU228447 lncRNA upstream 288246 8429304 ~ 8436084 (-) True G192937
TU228459 lncRNA upstream 311139 8452197 ~ 8455303 (-) True G192948
TU228456 lncRNA upstream 323251 8464309 ~ 8541281 (-) True G192945
TU228465 lncRNA upstream 339362 8480420 ~ 8513470 (-) True G192953
XM_034309107.1 mRNA downstream 31465 7979556 ~ 7990069 (-) False egr2b
XM_026915476.2 mRNA downstream 38557 7980063 ~ 7982977 (-) True egr2b
XM_026914587.2 mRNA downstream 211768 7804520 ~ 7809766 (-) True tmem26b
XM_034309162.1 mRNA downstream 384571 7601218 ~ 7636963 (-) False ank3b
XM_026915599.2 mRNA upstream 57026 8198084 ~ 8201220 (-) True LOC113527613
XM_026915598.2 mRNA upstream 57029 8198087 ~ 8201212 (-) False LOC113527613
XM_026915591.2 mRNA upstream 66886 8207944 ~ 8261110 (-) False exoc6
XM_026915590.2 mRNA upstream 66886 8207944 ~ 8261110 (-) False exoc6
XM_026915597.2 mRNA upstream 66886 8207944 ~ 8259602 (-) False exoc6
XR_004579320.1 other downstream 1427144 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 2245514 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 2407580 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 2548064 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 2719329 5302113 ~ 5302205 (-) True trnai-uau_5
trnap-agg_9 other upstream 317269 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 334201 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 706604 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 935731 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 936060 9077118 ~ 9077199 (-) True trnal-uag_4