RNA id: XM_026915109.2


Basic Information

Item Value
RNA id XM_026915109.2
length 8095
RNA type mRNA
GC content 0.51
exon number 38
gene id cacna1g
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11857394 ~ 12033353 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTCCGCGCGCGAGCCTGACTTTTCGCCAGCTTTCTGTCTTCGGGCTACTTTTTTCTGTCATCGGAAACGATCATGCGATGAGTGAGTTTCGTCTGGGGTTAATACCAGGAGCAATTAGCTTACAGGAGGTGAATGATGGCTGAGGATGGAGGAAGTATTTCTGAGGAACACACAGCGACGGAGGGAGATGCTACATCCTCTCTTCCCAGGACCTTCATCCGACTGAATGATCTGTCTGCTGGAGGAGAGCGAGGAGCTGATGATGAAGCTCATGATGGagcagagaggagggagagcACGGGAGGCCCAGTGGCTGAGGAAGCAGCTTCGGCTGAAGGAGGTGGAGAGGCTTTGCCCTATCCCTCACTGGCACCTGTTGTCTTCTTCTACCTGAAGCAAACCACACGTCCTAGGAGTTGGTGTCTGAAAATGGTCTGCAATCCGTGGTTTGAACGGGCCAGTATGCTAGTGATCCTGCTGAACTGTGTGACTTTGGGCATGTTCCACCCGTGTGAGGACAGTGACTGTGACTCAGAACGCTGCAAGATCCTGGAGgATTTCGACGacttcatttttgcattttttgctgTAGAGATGGTGATTAAGATGGTAGCACTGGGCATCTTTGGCAAAAAGTGTTACCTTGGGGATACCTGGAATCGGCTAGACTTCTTCATTGTGCTGGCTGGgATGCTGGAATATTCGCTCAACCTGCAGAATGTCAGTTTCTCTGCTGTTCGTACTGTCAGAGTGCTGAGGCCTCTACGAGCGATCAACCGTGTGCCCAGTATGAGAATCTTGGTGACTCTCCTGCTGGACACTCTCCCTATGCTGGGCAATGTGTTGCTGCTCtgcttctttgtctttttcatcTTTGGGATTGTTGGGGTCCagctgtgggcggggcttctcCGTAACCGCTGCTTCCTGCCTGTGAACTTCTCTGTTCCCCAAAGTGTAGACCTGCCCAATTACTACCACGTTGACGATGAGAGCCCGTTCATCTGCTCTCAGATGGGGGATAATGGGATGCGCCACTGCAACTCCATACCTAAGTTGCATGAGGACGGTCTGCAATGTCAGCTGGATATGGGAGCCTACAACAGCACGGATAACACCACATGTGTTGATTGGAACCAGTACTACACCAACTGCTCTGCTGGGGATGTCAACCCTTTTAAGGGTGCCATCAACTTTGATAACATAGGCTATGCCTGGATTGCCATTTTTCAGGTCATCACTCTGGAGGGTTGGGTGGACATTATGTACTTTGTAATGGATGCACACTCCTTCTACAATTTTATCTACTTCATTTTCCTGATTATAgTGGGCTCATTCTTCATGATCAACCTATGCCTAGTTGTCATAGCCACCCAGTTCTCTGAAACAAAACAGCGTGAAAGTCAGCTGATGAAGGAGCAAAGAGTGCGATTCATGTCTAACGCCAGCACCCTAGCCAGCTTCTCAGAACCAGGTAGCTGCTATGACGAGCTCCTCAAATATCTGGTTTACATTGTTCGGAAAGCCACCAGGCAGTTAGGCCACCTAACCCGGGCAGCTGCTCGCCGGGCAGGCATCAGGATATGCGCCTCACCCACCCCCGAGCCTCCGAATGCCAAGAGACGAAGGCACAGGAAGCGGCAGGGCTCCATTCATCACCTtgttcaccatcaccatcaccaccaccatcactacCATCTTGGCAATGGGAATATCCGGAGTGACGGTGCCCAGGAGATCGAAGTGTCCTCGAGGAACAACAACAGGAATGGAGCAGGAACGGGACGTCTTACTCTCCCCACCATTGTGCCTCTGCAGGACCCGTCCCCTTCTTGCTCTGCAGCTCTGGGCTCCAGCAGTGCTGAATCTATACACAGCACCTACCACATGACCTGCCACTTGGAGCCACATCGTGCCTCCACATTAGGCCATCCAGTGCTGCACGCTTACAAGAGGAACTCAGTGCCATTTGCCGCACCAGTGCATAAGAACTATCCAACTCTACAGCCTCGTGTAGCCCTGGAACAGCTCAGGCAGAGGGCGCTGGATCCTGGAGGAGCCTGTTGCACTGCCAACATCCTCAGCAACCTCAACATACCTCCAAACCCTATCAACACATCCCAGTGCCTGCTGGAAACACAAGGGCCTGCAGGGAATTCCTCACGCAAGCTCTCCAATACCAACTGCAGTGGTACAAATTTGGATGCTATGCTGATGTTTGACCCTGAGACCTGCCCCTACTGTATCAAATCAATGGGTAATGATTCAGAGGGAACTGAAGCAAACGAGACTGCAGACTCAGACAGCGAGGGAGTGTATGAATTCACGCAAGACGCACACTATCGGGATGGCAGGGACCCCAATAGGAAAAAGAAGTTTAAATTAGGTGCTCGGGCAGCAAAGGTAGTGCACTTCTGGAGACTGGTGTGTGACACATTCCGCAAGATTGTAGACAGCAAGTATTTTGGACGAGGCATCATGATCGCCATCCTCATCAATACCCTCAGCATGGGAATCGAGTACCATGAGCAGCCTGATGAGTTAACCAATGCGCTGGAGATCAGTAATATTGTGTTCACCAGTCTGTTTTCCCTGGAGATGCTCCTGAAGCTGCTGGTGTATGGCCCTTTCGGCTACATCAAGAACCCTTACAACATTTTTGATGGCATTATTGTCGTAataagtgtgTGGGAGATCGTGGGCCAGCAGGGAGGGGGTTTGTCAGTGCTGAGGACCTTCAGGTTGATGCGGGTGCTGAAGCTGGTGCGCTTCATGCCGGCGCTACAGAGACAGCTTGTGGTTCTGATGAAGACTATGGACAATGTGGCCACTTTCTGCATGCTGCTGATGCTCTTTATCTTCATCTTCAGTATTTTGGGAATGCACCTGTTTGGGTGTAAGTTTGGCTCAGAGAGAGATGGTGACACAATGCCCGACCGCAAGAACTTTGACTCTTTGCTCTGGGCCATTGTCACAGTGTTTCAGATCCTCACCCAGGAGGACTGGAATAAGGTTCTCTATAATGGCATGGCCTCCACCTCACCTGTGGCGGCTCTCTACTTCATCGCCCTGATGACCTTTGGGAATTATGTGCTGTTCAACTTGCTGGTGGCTATCTTAGTGGAGGGCTTCCAGACTGAGGAACTGGCCAAGAGGGAAGACTTGCATGGTCAGCTGAGCTGTATTCAGCTGCCAGTAGACTCAGGGGGGGATGGCTCCAAGTCGGGCTCAGAAGCAGATTTCTATACACGAAGCATTGATGATGTGCGCAGAAGCAAAAAAGATGTGTCGGCTTCATCTGTAGTGCCCATCAATGGCCATGTGGATCTGAAGGCCAGCCTTACACCTCCACTTATCACCCACACGGCTGCTACGCCTATGCCTGTGCCCAAGATCTCAGGAGGAGAAGACCTTGCTTTGGGCTACGAGTCACGCAGGGGCAGCAATGTTTCCATGGAGCCTGGCTGCCATGACAAGACTCCGTCGAGTGTGCGGAGCTCCCCGCATGCCCCCTGGAGTTCCAGCAGCAGCTGGAACAGTCGACGCTCCAGTTGGAACAGTCTGGGCCGAGCCCCGAGCTTGAAGAGGCAGAAGCGGCAGTCGGGCGAGCGGCGCTCCTTGCTCTCCGGAGACAGCCACTCCAGCTCTGATGAGGATGGTGCTGGAGGGGGAGGAAGGATGTTGGAAGGTGATAACGTTTCCCTCAGCAGGACAGATTCTTTTGGCCAAAGGCCACGGCACAGACGCATGGAGTCTCTGGAGACACGCAGCTCGTTTGACCTGCCTCCGGACACACTGCAGGTGCCGTACCTGCACAGATCGGCTAGCATCCACAGCACACGGCCACCAAATCTGATCAGCAATGGCAAGAGCTCGCCCACGGGAGCCACCACGCAGCTCTCATTAGATGATCATCACAGTGAGGATGACAATGCTGACGAGGAGGGAAACCTGagtcgAAGAGCTCGTCTGTACCGCTGGCTGGAGCGTAAGCAGCCTGAATGGTGCAGGCAGAGAACCACCtggtctctctatctctttcctCCTGAGTCCAGGATTCGTGTGAGCTGCAATAAAATCATCACGCACAAGATGTTTGACCATGTGGTGCTTGTTATTATCTTCCTCAACTGCATCACCATTGCCATGGAGAGGCCCAAGATTGAGGCAAAGAGTCCTGAGCGTATATTCCTGACGGTGTCCAACTACATCTTCACAGCCATCTTCGTgactgaaatgacaataaagGTGGTGGCCCTGGGCTGGTGTTTTGGGGAGAAGTCATACCTGAAGAGCAGCTGGAATGTTTTGGATGGGATGCTGGTGCTCATCTCAGTCATTGACATCCTGGTGTCTATGATCTCAAACAGTGGCACTAAGATCTTGGGCATGCTGCGTGTGCTGAGGCTGCTGAGAACTCTACGCCCCCTCCGGGTGATCAGCAGAGCTCCAGGGCTCAAGCTGGTGGTTGAAACTCTGATGTCATCCCTTAAACCAATTGGAAACATTGTGGTCATCTGCTGCGCCTTCTTCATCATTTTCGGCATCTTGGGGGTTCAGCTGTTCAAGGGAAAGTTCTACGTGTGCCAGGGGGAGGATACAAGgaatataacaaataaatctGACTGCCTTCTTGCTAAATACAAGTGGGTTAGGCACAAGTACAATTTCGACAACCTGGGACAGgctcTGATGTCTCTTTTTGTACTGGCCTCTAAGGATGGCTGGGTGGACATTATGTATGATGGACTGGATGCTGTAGGGGTTGATCAGCAGCCTATGATGAATCACAACCCCTGGATGCTGCTCTATTTCATCTCTTTCCTGTTGATCGTGGCTTTTTTTGTGCTCAATATGTTTGTGGGTGTGGTGGTGGAGAACTTCCACAAGTGTCGGCGGCACCAGGAAGCTGAAGAGGCCAAGCGGCGCGAGGAGAAACGCCTGAAaaggatggagaaaaagagaaggaATATAATGCTGACGGGTGTCAGTTGGTCCAGTCCTGAGAGCGGAGTGACAGAGGCTCAGTGTAAGCCTTACTACTCGGACTACTCTCCCACTCGTCGCCTCATCCACAAGATGTGCACTAGCCACTACCTGGATCTTTTCATCACCATCGTCATAGGCCTCAACGTCATCACTATGTCCATGGAGCACTACCAGCAGCCCAAGGTGCTTGATGAAGCACTGAAAATCTGCAACTATATTTTCACCATTATCTTTGTGCTGGAGTCTGTATTCAAACTTGTGGCATTTGGATTCAGACGTTTCTTCAAAGACAGGTGGAACCAGTTGGATCTAGCTATCGTGCTGCTGTCCATTATGGGGATAACTCTGGAGGAGATCGAGGTCAATGCCTCACTCCCCATCAACCCTACCATCATACGAATCATGAGGGTGCTACGCATTGCCCGTGtGTTAAAGCTCTTGAAGATGGCTGTGGGAATGCGAGCTCTGCTGGACACAGTGATCCAGGCCCTGCCTCAGgtGGGGAATCTGGGTCTTCTCTTCATGCTTCTCTTCTTTATCTTCGCAGCACTGGGAGTAGAGCTGTTCGGTGATCTGATATGTGATGATTTGCACCCCTGTGAGGGCCTTGGACGCTACGCCACATTCAAGAACTTTGGCATGGCCTTTCTCCTGCTGTTCCGTGTGTCCACTGGGGACAACTGGAACGGCATTATGAAGGACACACTGAGAGACTGCGCTCATGACAATGGAACATGCTACAACACAGTGGTGTCTCCCATCTACTTTGTGTCCTTTGTGCTGACGGCTCAGTTTGTGTTGGTCAACGTTGTAATCGCCGTCCTCATGAAGCACCTGGAAGAGAGCAACAAAGAGGCTAAGGAGGAGGCGGAGCTAGAGGCGGAAATGGAGCTGGAGGCAGTAGGGGGAGATGGGGGGATGACTGGGGGACACATTTCCCCTCTGGCCCTGCGAGACATAGGTGGGCCTGCAGGGTCTCGCTGGATCTCCAGAGACTCACAGGACAGAGGTTATCCCCCAGATAGCCCATCAGCTGCCATACGCAGAGACTCAACAGCACACAACACAGACCAACCTCAAGGTCTGGAGCCTCCGTTACAGATCCCCCTAGCTGAGATGGAAGCTCTGTCTCTGGCATCGGAGAAATCCTGGTCCTTAGCTCTGACGGATGACTCTGTCCCTGATGATTTTAATCCCCTCTTACTAACCAGTCTGGAGTGCAATAATGCAGATCCTCCTGAACCCTCAGCAGAGTCCGTGCGGCCACATGAACGTCTGGAAGAGCACCTACTATGTGTGAAGAAGACTTCAGTGGGGCGTGCACACTCCTTACCCAATGACAGCTACATGTTCCTACCCCACCAGCCCATCCCATCCTCAACAACCCTCATGACCTCAGCTCAGCAGACTCAGTCAGGCTCCATTGGTTCTGTGCAGTCTCAGACAGAGGAGCCCGCACAGCACCTCACTGTACCCACAGACCTTTTCCGTCCCATTAGCCCCCACAGCCTGTCTGACTCAGAGTGTATTCCCCGAATTCCTCCCCCTCGCCGGGGACACACACTGTCCCGCACCCTACGCCGACAGGTGGCAGTGAGCACTGACTCTCAGGAGGCCTTGTACACAAAAGGAGGGGAGAATGAGGGCCCCAAGGGGCTTGGTGAACTCTCCACTCCTCCCACTACATTCCCAGCACTGCAGCAGTTTCCCCAACCATCACTCTTCCTCGTTCCTGCAACACCAGGCGCCTCTCCCAAACCAATGCGCAGCAGTGTGCACACGCAGCACAACCCCCATGATCAATACAACATCTGCTCCAGGCATCGGTGCTCTCCCCCTGCCCAGGATAAACCTGCTGAGGATGACTCGGTGGATCAGGAGGTGTCTCAAATAATCCGATCAGGATTTGAAGATCATAGAGGTCAGGACTGCATTAGAGGAGGTGGAATTGGGGGAGGGCTGTGTGAAGGCCGTGGTCCATCTCTGAGGCAGTTGAAGAAGTACCACAGTGCAGACGTGCAGTGTAGGCGGGCACCACTACTACTGCCTCGGCCCTCTTCCTGGCTTGATGACCCACGGCGCCACTCCATCGAGGTGTGTCCGTCGGTGGAGAGCAGCCCCCAGCGGAGCTCAGTGTCCTCTGGTTTTGTGTCACGCGCAGACAGCTTACAACAGCCCTCGCCCCGGACccgcaagaagaagaagatgagcCCTCCTTGCATCTCTGTGGACCCTCCAGAGGGGCTGGTGCTTCCAAGGGACTTCCAGCTAGTGTTGGACACTGGGATGGGTACAGTGCCACCCTCTCTGCCCAGCAGGGACACCTGCCTGAGAAGGAGAGCCCCCTCCAGTGAATCCAAGGACTCATTCGATTTgggtggaggaggagatggGTTGCCCCAAGAGGGGGTTTCTAACCCCAAGCTATTAACTCTGCCCAACTTCTCCTTTGAGAAGACAAGCTCTGAGCACtgaacatgtacacacaaatgcactaaAGTGCATACAAATGCATATATGCACATGTATAAAAAAAGACGATGCACTCTGTGTGTCCATGACAgtgataatagtaataatagcaTAGAGAGTAATAGTGTTAAACACAACAATGGTGAATAACCAATGATCATGATGAATAGTGACCATTTCTTGTCTTTGTCCTGTACtgccaaaaaagaaaacaaaacgaCACTGTAATGAGGACAAACCAAGCTAATAACAGAACTGTCTCTCTTCCATCATGCCAGCAGGCATTTGCTGGCAATCCTATGACCTCCTATTGAACGTTGCTCTTGGGGTCCACACAGGGCTCCTTCTGTTGGGTGTTTTGGAGACTTTTTAGCACAGCCCTTCTTCCCGAAGGGCAGTGGTGAAGGTACAAAGCAATATGAACGTTTTAGAGACACTATTTTCTTAAATTATTGGGCCATAGTATTTGTACAggatgtagatttttttaatttcaatatatttttatttgtgtcccTTTGTGACTTTTCAATGTTTaaattgtttgttgttttgctttattttttcaccATAGGATATTTTTAGCTTTAGGgagtattaaaaaagaaaaggaaacattttttcattcaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230688 lncRNA upstream 138281 11718897 ~ 11719113 (+) True G194748
TU230532 lncRNA upstream 236125 11614389 ~ 11621269 (+) True tmem106a
TU230523 lncRNA upstream 254953 11597530 ~ 11602441 (+) True G194623
TU230527 lncRNA upstream 264303 11592892 ~ 11593091 (+) True G194627
TU230438 lncRNA upstream 478204 11378461 ~ 11379190 (+) True G194571
TU230779 lncRNA downstream 5150 12038503 ~ 12038728 (+) True G194828
TU230784 lncRNA downstream 29482 12062835 ~ 12063498 (+) False LOC113527436
TU230950 lncRNA downstream 106659 12140012 ~ 12140220 (+) True G194989
TU230966 lncRNA downstream 111648 12145001 ~ 12145207 (+) True G195002
TU230980 lncRNA downstream 141041 12174394 ~ 12176119 (+) True G195016
XM_026915446.2 mRNA upstream 25730 11795917 ~ 11831664 (+) True spata20
XM_026914524.2 mRNA upstream 73246 11760614 ~ 11784148 (+) True etv4
XM_026914527.2 mRNA upstream 73961 11760137 ~ 11783433 (+) False etv4
XM_026915249.2 mRNA downstream 29455 12062808 ~ 12085359 (+) False LOC113527436
XM_026915251.2 mRNA downstream 29455 12062808 ~ 12075114 (+) True LOC113527436
XM_026915250.2 mRNA downstream 29455 12062808 ~ 12065553 (+) False LOC113527436
XM_026915677.2 mRNA downstream 108207 12141560 ~ 12142743 (+) True LOC113527660
XM_026914596.2 mRNA downstream 145670 12179023 ~ 12185038 (+) True cdk5r1b
trnaq-cug_16 other upstream 571126 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 1792768 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 2222327 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2343559 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2344763 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 439330 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1449948 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1449948 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 4822417 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5543930 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile