RNA id: XM_026915143.2


Basic Information

Item Value
RNA id XM_026915143.2
length 7022
RNA type mRNA
GC content 0.45
exon number 26
gene id scn4aa
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6023767 ~ 6061324 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAAGAAGACGACAGTAAAGACTTCAGCTGAGAGCTTTTAAAGAAGACCAAAAGGACTAGTACATTTTAAAGCCCTGTGGAAGTATTAATCAGGTGTGCAAGGGTAGAGATTCCTCAGTGAGGTAGTGTATCTTCGCAATGCGAAGATGGCGAAGATGGTCCCTACCACAGTCACCAATGTGTTCCGCCGCTTCACTCCGGAATCACTGGCGGAGATTGAGAGGCTCATTGAGGAGCAGAAAATCAGCAAGGAAGTAGAAGGTGTGGAACCAGAGAAAGAGCCAACAGCACCTAGCAGTGACCTGGAGGCAGGGAAGTCTCTGCCCATGATCTATGGAGATCCACCTGAGGAGCTGCTCAACACACCTCTGGAAGACATAGACCCCTTCTACAAAGCACAAAAAACATTTATTATAATCAGCAAAGGCAACACAATCTACAGGTTTAATGCAGAACCATCCTGTTACTTTATCAGTCCATTTAACCTTGTGAGAAGAGCAGCCATAAGAATTCTCATACATTCGCTATTTAGCATGTTCATCATGATCACTATTCTCTCCAACTGTGTATTCATGACGATGAGCAACCCTCCTGCCTGGAGTAAAACTGTGGAGTATGTCTTTACTGGAATATATACCTTTGAGGCAGCAATTAAAGTGGTGTCAAGAGGCTTCTGTATTGGACCTTTTACATTCCTACGTGATCCATGGAATTGGCTGGATTTCATGGTGATTAGCATGGCGTACATCACAGAGTTTGTTGACCTTGGCAATGTATCAGCGCTTAGGACGTTCCGTGTGCTCAGAGCTCTTAAAACAATCACTGTTATccctggctTGAAAACTATTGTTGGAGCTCTGATCCAGTCTGTCAAGAAGATGGGTGATGTAATGATTCTGACCAGCTTTGCCCTGGCTGTGTTTGCCCTCATTGGCCTGCAGCTATTCATGGGGAACCTGCGCCAAAAGTGTATACGCTGGCCAATTTCAAACAGCACTATGGATGACTACAACTCCACCCTGACCTACAACACCACCTTCATCAACAACACTTTTGACTTTACAGCCTACATTGAAAGCCAAGAAAACCAGTACTTTCTGGATGGTAGCTTAGATGCTTTACTATGTGGCAACAGTTCTGATGCTGGAAAGTGCCCAGAAGGATTCACATGTATGAAGGCTGGAAGGAACCCGAATTATGGCTACACCAGCTTCGACACATTCGGCTGGGCTTTTCTTGCTCTCTTTAGGCTCATGACTCAGGACTACTGGGAGAACCTCTTTCAGCTGACTCTCCGTGCAGCTGGGAAAACctacatgcttttttttgtggtggTCATATTTCTGGGATCATTCTACCTCATCAACCTAATCCTGGCTGTGGTTGCCATGGCGTATGACGAACAGAACCAGGCCACAATTGCTGAGGCCCgggaaaaagaggaagaatttcagagactgctggagCAGCTGAATAACCAAGAGCAACAGTTGCAAGCTGGTAGCAAGGCATCATTGGCCAGTCAGACAACTCAGAGTAGAGGGTCAGAAATGGCAGATGATGGGGATGATGTAATAAAGGATGGTAATGGTAGGATTATTCCCCGTCTGGTCATCCATAGAGCCCCATCTATGGTAAAGTCAGCACCAGACGATGAGCAAAATGCTGACAATAAGTCAGTATGCTCCCAGCATAGCAGGATGCACCTGGAACATCCTGGGCTCTCTCAGAGAACAGCCAGTGCCATGAGTGTGCGCAGCACAACTAGAGAAGAGTTGGAGGAGGCCCAGAGGCCTTGTCCTCCAGGCTGGTATAAGTTTGCTGACATCTTTTTGAAGTGGGACTGCTGTGCACCCTGGATGTTCTTCAAGAAATGGGTCCATTTTGTGGTGATGGATCCTTTTGTGGACCTGGGCATCACAATTTGTATTGTGCTCAATACACTTTTCATGGCTATGGAGCACTATCCCATGAGTCCAGAATTTGAACATGTGCTCACTGTTGGCAACTTGGTGTTCACTGGTATTTTCACGGCTGAAATGGTGTTCAAGCTCATTGCCTTGGACCCATACTACTACTTCCAGGTGGGCTGGAACATATTTGACAGCATCATCGTCACTCTTAGCCTGGTGGAGTTAGGCCTAGCCAATGTGCAGGGTCTGTCTGTCCTCAGATCCTTCCGTTTGCTGCGAGTCTTTAAGCTGGCTAAATCCTGGCCCACGCTCAACATGCTGATCAAAATCATTGGTAACTCAGTGGGTGCTTTGGGGAACCTGACTCTGGTGCTGGCCATCATTGTCTTCATCTTCGCCGTTGTTGGCATGCAACTCTTTGGCAAGAGCTACAAGGACTGTGTGTGTAAGATCGCAGAAGACTGTGAGCTGCCCCGCTGGCACATGAATgattttttccattctttcctCATTGTCTTCCGCATCCTGTGTGGCGAATGGATTGAAACAATGTGGGACTGCATGGAGGTGGCTGGAGCAGCCATGTGCCTTGTGGTTTTCCTCATGGTCATGGTCATAGGAAACCTGGTGGTGTTGAACCTGTTCCTTGCCTTGCTGCTCAGCTCATTCAGTGGGGACAATCTCTCAGCGGGTGATGAAGATGGTGAGATGAACAATCTCCAGATTGCCATTGGCCGCATCACCAGGGGCATTGACTGGGTCAAATCCTTAATCATCAGCATTGTATGGCAGATATTGTGCAGGAAGCCTCCTGAGGGTGACACAGGGGGAACAGAATGTGGTGatacagacaaaaaagaaagtttttcaTTAAACCACCTTGATGAAGGGAAGATGGCAGATGGGTTGACTAACTGTCTGGAGGCTCTGACCCTGAATGTGCCAATTGCCAAAGCTGAGTCTGATGTTGAAGATGAGGAGTCAGAGGGTTCATCTGAAGATGAGGATCCAACCAAAAAGAAGGGTCAGGGTGTTCTCAATGATGACTCTTCAGTGTGTAGCACAGTGGACTATAAGCCTCCAGAAGCCCCatctgaggaagaggaggaagaggaaccAGAGCCTGATGATCCAGAAGCCTGTTTTACTGAAAACTGTGTGAGACGATGTCCATGTCTGAATGTGGACATCACTCAAGGAAGGGGAAAGAGTTGGTGGAATCTGCGCAGAACTTGCTACATCATAGTGGAGCATGATTACTTTGAAACTTTCATCATCTTCATGATTCTTCTCAGTAGTGGTGCACTGGCCTTTGAGGACATTTACATTGAGCGTCGCAGGGTGATTAAGATTATCTTGGAGTATGCAGACAAAGTCTTcacatatatttttgtaatagaGATGTTACTGAAATGGGTTGCATATGGCTTCAAGACTTACTTCACCAATGCCTGGTGCTGGCTGGACTTTTTAATTGTTGATGTGTCACTTATCAGTTTAACAGCAAATTTATTGGGCTATTCAGAGCTGGGGCCAATAAAATCTCTCAGAACACTTAGGGCGCTTCGACCTTTACGTGCCCTTTCCAGATTTGAAGGAATGAGGGTGGTAGTGAACGCATTGGTGGGTGCCATTCCTTCCATCATGAACGTGCTCCTGGTGTGTCTAATATTCTGGCTGATCTTCAGTATTATGGGGGTTAACCTGTTTGCTGGAAAATTCTACCGCTGCATTAATACCACCACAGAAGAGCTTTTCCCCATTGAGCAAGTGAACAACATGAGTGACTGCATAGCACTAATGCACACTAATGAAACGCGCTGGGTCAACGTCAAGGTCAACTATGACAATGTGGGCTTAGGTTACCTTTCCCTGCTACAAGTGGCTACATTTAAAGGCTGGATGGACATTATGTATGCTGCAGTGGATTCCAGAGAGGTGGAAGAACAGCCATCATATGAGATTAACAtgtatatgtatctgtattttgtcattttcatcatcTTTGGCTCCTTCTTCACCCTCAACCTCTTCATTGGTGTCATCATTGACAACTTCAATCAGCAAAAGCAAAAGTTAGGTGGGCAAGATCTCTTCATGACAGAGGAGCAGAAAAAGTACTACAATGCCATGAAAAAGCTGGGTTCCAAGAAGCCTGTCAAACCCATACCTCGACCTGTGAATATGATCCAGGGCTTGGTGTTTGACCTCATCTCTCAGCAGTTCTTTGACATCTTCATCATGGTGCTGATTTGCCTCAACATGGTTACCATGATGGTTGAGACAGATGACCAAAGTGCAGAGAAGGAAAATGTTCTGTACCTGATCAACCTAATATTCATTGTTATCTTCACTGGGGAGTGCATCCTCAAAATGTTGGCACTGAGACAATACTTCTTCACTGTGGGATGGAATGTGTTTGATTTCATTGTTGTCATCCTTTCAATAGCTGGACTTATGCTGTCAGACATAATCGAGAAGTACTTTGTGTCCCCAACCCTGTTCCGTGTCATCCGCTTGGCTAGAATTGGCCGTGTGCTACGTCTTATCAAAGGTGCAAAAGGCATCAGGACGCTTTTATTTGCTctgatgatgtcacttcctgccCTGTTCAACATCGGCCTGCTTCTCTTCCTTatcatgttcatcttttctATTTTTGGCATGTCTAATTTCGCCTATGTGAAAAAGGAGGCTGGCGTTGATGACATTTTTAACTTTGAGACATTTGGGAATAGCATCCTCTGCCTATTTGAGATCACAACTTCAGCCGGTTGGGATGGACTACTGCTACCCATGCTAAACAGCGGTCCTCCTGACTGTGACCCTGACATTGAAAACCCTGGAACAGATGTGAAGGGCAATTGTGGCAACCCAGGCATGGGCATTATGTTCTTCTGCAGTTACATTATCATGTCTTTCTTAGTGGTGGTGAACATGTATATTGCCATCATCCTGGAGAACTTTAATGTTGCCCAGGAGGAGAGCAGTGACCTGCTATGTGAGGAGGACTTTGAGATGTTTAATGAGACTTGGGAGAGGTTTGACACAGAATGCACTCAATTTTTGGACTATGACCGTGTGTTTGACTTTGTTGATGCACTGCAAGAACCCTTGCGTATTCACAAACCTAACAGAATCACACTGGTCAACATGGATCTGCCGGTCGTAATAGGAGACAAAATCCACTGCCTAGATATTATGCTGGCCGTCACTCAACAAGTGCTGGGAGACACTACTGAGATGGCAGCCATGAGGGAGAGCATGGAGGCAAAGTTCAAGATGAACAACCCAAGTCCTGCATCCTTTGAGCCCATTATCACCACTCTGaggagaaaggaggaggagCGGGCAGCCATTCTGATCCAACGTTCATACCGAAAACATCTCCTCAAACGCGCTATCCACCACGCCTCCTACATGCATCGCTCCAAGAAAAGAAAGGTGAGGCGGCAGGAGGATGAGGAACCGCCAGAAATAGAGGGTCTGATAGCACGCAAGATGAATGCTCTCTATGGCAGCAATGCAGAACTGGCTATGGCTCTGGAGCTTAAGTCTAGGCCTATGCCAGTCAAACCCACTTCACCTGGTCTCACAGTTCCAGTAACCTACCCACGGGCCCAAGGCCGACAGAGAGTAGTGCCAGTAGAAGTCACAAATGATCTAGTTCTCCGTTCTGCACCCACAACTATGCAGAACTCTTCAAGTTCAGAGGTGGCAGCAGCAAAAGAATCAATAATATAGTAGAGAGACAATGttcaacatttttttgtcttttttatgcaAAAAGTGATGTGTTAAACTGAAGTATCACCTGCACAAAAAGAAACCATACTGATGCTCTGCAACACACATCAATTTTATAGAGTTTTTGAGGTGATGTTTATTGGCGTCCagtaatgatatttttttatcacAATAGAATTTTTTCTGCATCTGTTTTGGAGctgatttgttttgttgatCAACCTGTTCCATGctcaaaaaatgaaacactaatCCTGTGGCAAACTTTAAATTAGTCAGACTATTGTTTTCCGTTTCCCCAAAATCTGCAGTATTTTTGTGTACTCAGGTTCACCATTTGAAGTTGTCCACTTCCTGGTGTTAAGACAAAAGTTGTTAGAGGCTTTTTCACTAAAATATATTTCCTCACCCTTCACCCTAGAGCTGCTGTAACTACTCCCTGATTTGTCTTGGGGCCTCACTTTCCTTTGCACTATCTTTAGACCCCCAGTTCATGGCCTGCCAGTTTACAACAGGGAGACAGAATGAGTAGAATGGGCTCTGATCAATTACATGGGAGGTATACTGTCACATTGGGCACTATGTGCAACTGCATAAGGCATACATAACCAGTACAGTACATACTTCCTATACTTCCTATAGTGTTTATTTCGAGTCTCTGAATGCACTCAGTCAACCaggtcatttaaaaatgattaggGCTGTTATATAAGTGgtgaaatgtttttaagaaCATAAGTTGCCTTGACTTAATACCATTATACTGCTGTTCTTATAATCatgaaacaaaagtaaaaataagGTATGAGATTAAGATTCCAAGAGTGTGGCAGAGGTATTTTTATGACCATGGGTGCAAGTGGCAACCTGGTGCAGAAGGGTGTGGTTAAAGTTAATATATTATGAAGAGGTATGGCTGTGATATTGACTCAGATAAGCTCTTCTTATTAGTGTCAGCACAATTATGTTGTTGTAATGACATacaattaaatgcattttttttgtcctcccGTTGTGGGCCTTTGCTCACATGTGCGCGCACTCATGTTGATTTTGGCTAATTCCTCTTCTCTATGTTGGCAATATTTCTGTGCTTAATTACACGTCAGCTATCTGGATAAAATTATTCGGTCAGATATGCACCGAtcggccataacattaaaaccactgacagatgaagtgaataacattgaatatctcgttacagtggcacctgtcaaggggtgggatatattaggccacatgtgaacagtcagttctcaaagtggaTGTGTTGGAAAAAAGGggaagcgtaaggatctgagcgactttgacaagggccaaattgtgattgctagacgactgggtcagagcatcttcaa

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0005248 voltage-gated sodium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226822 lncRNA upstream 75181 5946225 ~ 5948586 (+) True G191591
TU226819 lncRNA upstream 82920 5940621 ~ 5940847 (+) True G191588
TU226794 lncRNA upstream 115591 5906464 ~ 5908176 (+) True G191568
TU226695 lncRNA upstream 247757 5772900 ~ 5776010 (+) True G191497
TU226687 lncRNA upstream 282862 5740164 ~ 5740905 (+) False LOC113527671
TU226978 lncRNA downstream 153949 6215273 ~ 6217094 (+) True G191711
TU226989 lncRNA downstream 207200 6268524 ~ 6270885 (+) True G191719
TU227164 lncRNA downstream 399487 6460811 ~ 6461014 (+) True G191866
TU227167 lncRNA downstream 402065 6463389 ~ 6473466 (+) True G191868
TU227354 lncRNA downstream 635408 6696732 ~ 6696970 (+) True G192029
XM_026915189.2 mRNA upstream 59207 5940949 ~ 5964560 (+) True kansl1a
XM_026914736.2 mRNA upstream 257383 5746873 ~ 5766384 (+) True mmp25b
XM_026914737.2 mRNA upstream 257383 5746873 ~ 5766384 (+) False mmp25b
XM_026915697.2 mRNA upstream 282871 5730154 ~ 5740896 (+) True LOC113527671
XM_026915490.2 mRNA upstream 334186 5682041 ~ 5689581 (+) True mapk7
XM_026914713.2 mRNA downstream 8095 6069419 ~ 6074090 (+) True cd79b
XM_026915341.2 mRNA downstream 107542 6168866 ~ 6184364 (+) True plekhm1
XM_026915507.2 mRNA downstream 124910 6186234 ~ 6214345 (+) True arhgap27
XM_034309480.1 mRNA downstream 124910 6186234 ~ 6214345 (+) False arhgap27
XM_026915508.2 mRNA downstream 124910 6186234 ~ 6214345 (+) False arhgap27
TU226808 other upstream 40530 5969743 ~ 5983237 (+) True G191581
TU226411 other upstream 683204 5337253 ~ 5340563 (+) False LOC113527051
TU225934 other upstream 1184398 4755097 ~ 4839369 (+) False G190865
TU225847 other upstream 1428654 4593107 ~ 4595113 (+) False lrrc18b
trnae-cuc_25 other upstream 1590455 4433241 ~ 4433312 (+) True trnae-cuc_25
trnas-gcu_1 other downstream 154521 6215845 ~ 6215926 (+) True trnas-gcu_1
trnal-aag_2 other downstream 155043 6216367 ~ 6216448 (+) True trnal-aag_2
trnal-uag other downstream 161393 6222717 ~ 6222798 (+) True trnal-uag
trnas-gcu_2 other downstream 162212 6223536 ~ 6223617 (+) True trnas-gcu_2
trnal-aag_3 other downstream 162701 6224025 ~ 6224106 (+) True trnal-aag_3

Expression Profile