RNA id: XM_026915146.2


Basic Information

Item Value
RNA id XM_026915146.2
length 4748
RNA type mRNA
GC content 0.39
exon number 13
gene id mapk8b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4625598 ~ 4648676 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCGGGCTCCTGGGTTTGCGGCTCAAAGCGGAAAATAACtggaatattaaaatattcccTTGTGTCTGCCCAGAGAAGGAATACAGCGTATTTGTCTTGACGCGGACCTTCTTGAATATCTCTGAGAGTatcTGGTGTCGTGGGATCTATTTGAATGCCCAGCACACAATTAACACGAATATCACCATGAATAGGAATAAGCGTGAGAAAGAGTATTACAGTATAGACGTCGGGGATTCCACATTCACCGTTCTGAAGCGCTACCAGAATTTAAGACCCATCGGCTCTGGAGCACAAGGCATCGTCTGctcgGCGTATGACCACATCTTGGAGAGAAATGTCGCTATTAAGAAACTCAGTCGACCCTTTCAGAACCAGACCCATGCCAAACGGGCGTACAGAGAGCTGGTGCTCATGAAGTGCGTCAACCACAAGAATATCATTGGACTCCTAAATGTATTCACGCCACAGAAAACACTTGAAGAATTTCAAGACGTTTACCTGGTCATGGAGCTGATGGATGCTAACCTGTGCCAGGTGATTCAGATGGAGTTGGACCACGAGCGACTCTCCTATCTGCTTTACCAGATGCTCTGTGGCATCAAGCATCTGCATGCAGCTGGCATTATACACAGGGACCTGAAGCCAAGCAACATTGTGGTGAAGTCAGACTGCACGTTGAAGATCCTGGATTTTGGCTTGGCTCGCACAGCTGCCACTGGGCTCCTCATGACCCCCTACGTGGTGACACGCTACTACCGTGCACCAGAGGTCATACTAGGCATGGGTTACCAGGCCAATGttGATGTCTGGTCTGTTGGCTGCATCATGGCCGAAATGGTCAGAGGCAGTGTGCTGTTTCCAGGCACTGATCATATTGACCAGTGGAATAAGGTGATCGAGCAGCTGGGCACGCCGTCTCAGGAGTTCATGATGAAGCTGAACCAGTCTGTAAGGACCTACGTGGAGAACAGACCCCGATATGCAGGGTACAGTTTTGAGAAGCTTTTCCCAGATGTTCTCTTCCCTGCTGACTCTGACCACAACAAACTCAAAGCGAGCCAGGCTCGAGACCTTCTGTCCAAAATGCTGGTTATAGATGCATCCAAGCGGATCTCTGTGGACGAGGCCCTGCAGCATCCCTACATCAATGTGTGGTATGATCCCAGTGAAGTTGAAGCGCCTCCACCGTTGATCACAGACAAGCAGCTGGATGAGAGGGAACACACTGTGGAGGAGTGGAAAGAGCTGATATATAAAGAGGTGCTGGACTGGGAGGAACGCTTCGAAAAATGGTGTAATCCTCATGGACAACCGGGCTTCAGTAGCACAGGTGCAGCAGTGACCAGCGGCTCCCAGCACAGCTCCACGTCCTCCTCGTCCTCCGTGTCCACCGTCCTCGCGCTGTCCTCAGAGACAGAAAGCAGCTTGGAGACTTtgttctcctcttcctccaccgGGCCAGTCGGCTGCTGCAGTTGACCATCACCCCATCCTTCTCACCTCCGTGACCTTCCTCCATCCGTTTTCAGACTGACTTCGTTTCTTTTCGGTCAGGGGAAAAAGTCAGAGTAAGGTGGGAGTTTTTAAAAGGCACCTTAAGAAGCTTTTACACCAAACCAGCGTTACTTTggtcgctttttttttttgtgggttgGGGGGGGGAACGACTTGATTTAGTGTCAGACTGAAACTACCGCTGCATCTCCTCAATGCCATGTTGTTCATTTGTAACGGTTGTACGGTAAATTTATATTTGAAGATGCTTTGAATTTCAAGATTGCTGTGAGCCAAGTTTATGGCAGTTTAGCAGAATGGCACATTGTGTTAAAGACTCAGCTCTGTCATTCTGTTACTGTTTTAGAGTTAAATACAATGCATCTTGAATGAATTTCCagaatatttgtttaataagcAAATATTACTTCAGAGTCTTTCTCGCATGACTTAATGCTGAGATCAGGTCATAGCGCATTTATTCGGTTCTTTcactattttacaaaaaaaaaattatttataataggCATTTTAACATACTTATTTTGTCCTCTCTTTTTTGGTTGATTTTGCTACAGGACTTTATAGATTAAATACATCCATACTGTACAGGTTTTGAGGTTAAAATCTAAACAGCAGTAAAGGGTAAATTAAaggttatattattattattattattattattaatttttttggtctttAGTGCTTTGTACCGCTTGGCCCTGGAATGTTGCAAGGCTCTTGTAAGGTGAACAGTTTGATGTAGAACATTTGTGAAACCCTATTTACAGTATAGGTCATGTCTCTAAATGGcacagtgcattctgggtattCTGTGCCTGCTAGAATGTGTCATTTGGACACTATCTATTGCAGGGCATTACAGGACTTTGTGAGTGCACGGGGTATTTTCCAGTAAGCTTTTAGTTATGACTCGAAATACAGGAAATACGGCGTTATTTCAGTGGAATGTATGAATAGCAGTATAGATAAGAAAGTAAGTTATGATTTGAAATTATATACGTACGTATATAATTGAATTATATACGTATATTCTACGTATATACGTAGTGACGTATTCTGTAAGATTATAAAAAGCTGTCTCACTCAGATATTTTGTTGGTAACGCTTTACATTAAGTGTCCATTTAGTGACATTATTTAATACACATTACTATGAACAAACCATAAACTCCAGCATTAATAATCCAATTAACGTTAACAATCGAAGTAATAACACTTGTATTAATTGATGCtatcttttaaataataaaccaaatattcaACACGTCCATTAATCAATGTTCTACCATCACTCAGTAAACTAAAGCCTACAGTGATGTGGGCAACATGAACATCACCTTAACGAACATGTGGTTGTTACCTGGGAGATTCAGAACGCAGGCTGAAAAGaaagttgtaatatttacaCCTGAACACCAGCGTTCAGTAAGTTCTGAACATTTAATAACATGCTGTAAGTGTTAACATTCTGCAGAAGTTTATGGTTTGTTAATGTTGATTAAagctgtaaataatgttagttaagggaaccttaatgAAAAGTGTTgccttactattattattattatttcatttttgtataggtgaatgttttttttttttttttttttttttttttttttcctaaaattcAGCACAACTCAATAACCTTGAATAACCAGCTTTTATTGCCCTTCGAGTAATTACATACCAGATTAATGTAATCGGCAGATCTGTGACTAGACTTGTATGCCTGCCTGTTGATGCAATGCAACCAAACAAAGCAAGTCAATGCTAAATCCTAAACCTGTATGCAATAGCGGTTTCCTTTTGGACTTGTTTTCATGTTCCTTATGAAAGTGCCTGTGTCATTCATTCTCAAACAGCTCATAAAACATGAAACTTCTTGGAAATTCCAGAGCAGATCACAGTTGGTATGATGTATGGAgtgtctatttttattttatttttttttatggatatGATCGATTCGAAGACTGTTGGAGTGATAGTGTGTCAGGTGTACCATGATTAACGTGACAGCCTTTGATTTCAGTAGGATAGTTTTAGCAAGCAGGATGTATAAAAGTAGTTAAATTGTAAATGTTCGTGGATGATAATTGTACAGTGTTTGGAGCTCAAAGTTTGAAGAAAAGCTAACGTTGATGTGGTGGTGATGGTCTTTGACATGGTGTTATAGAATGTAAAACGTCACGTTATTGAGGGTTTATGTATGTGGTGACTGGCAGGAAGCTGAATTGGAGATAATGCTGAATGGCCGGCCAACAAATTTTATGACTCTTTAATCATGTTACAGCACAGGTTTCTACACGTTTGCAGTTAGCTTTTCGttctttgttgtatttttgttctaAGTGCTCTTATTTCTTTGGCCTTCTTTCTGAAGGCAGCATCTGATGAATTTTTTGATGAAATTTCATCTTTTGATgaatttgcttttcttttacttCTTCAAATGTGATAGCGCAGTTACAATTCTATCACATTACAATGACATTATAATTCTAATTAAAGTACACATTGATCAACTACCTCACTCCAAATTTCTACAACTTCTTGGATATTTAGCTGCCCATTAGGTGTCCAGGATGTGTTAATACAAattccattatttatttatttgaacgTTTGtcaatagtaaaaaaaaacgtctagttttgtacagtatgtatatttCACGTAGAAGTAAAAGGACTGTAATGtaaatttttgttcttttttttttttttttttttttttaaacagttcatGTGCAATACCCTCTGCTCTGTGTGCTTACTCGTAAGTGTATCTAGCTACAGTATGTTAGCTGTATGTTCCCAAAGGTAGAGAAATGTTAGGTACtgtcaattcagttcagtttaattCAGCTAAAATGCAATGCTAAATTCATGAATTTggatctttatttttaattaagttCTCTGTGACAAGTTAATTTGTGTCACAAAAACTGATGATCTGGAACTAGACAGAGGTGTATGATTTACATGGCCAATGGATCATTCTAGTAAggctgaaagacaaaaaaaaaaaatccctaaaaGCCTACTTGTGTAAGCTGGTCTGTAATCTTTGCTAGCAATACTGGCAATGCAAAATCCTTACTCTGTGTGCTCCTTCCTGCATACAGACTATCAGAAGTGCACTACTAGAATAAATGCACTGGGATCTCACCAAGCCAATGTTAAAACATGTACTGCAAATAAATACTTCTGTTGGAATTA

Function

GO: NA

KEGG:

id description
K04440 JNK; mitogen-activated protein kinase 8/9/10 (c-Jun N-terminal kinase)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225890 lncRNA downstream 28775 4596539 ~ 4596823 (-) True G190829
TU225878 lncRNA downstream 50068 4573682 ~ 4575530 (-) True G190821
TU225794 lncRNA downstream 336795 4288417 ~ 4288803 (-) True G190742
TU225783 lncRNA downstream 366844 4254493 ~ 4258754 (-) True G190731
TU225706 lncRNA downstream 464591 4159776 ~ 4161007 (-) True G190656
TU225914 lncRNA upstream 17636 4666312 ~ 4666571 (-) True G190849
TU225963 lncRNA upstream 52428 4701104 ~ 4750877 (-) True G190885
TU226166 lncRNA upstream 263058 4911734 ~ 4918977 (-) True trnap-cgg_3
TU226433 lncRNA upstream 734319 5382995 ~ 5387137 (-) True G191279
TU226592 lncRNA upstream 794286 5442962 ~ 5445167 (-) True G191413
XM_026915799.2 mRNA downstream 67464 4550108 ~ 4558134 (-) True LOC113527719
XM_034309645.1 mRNA downstream 67670 4550108 ~ 4557928 (-) False LOC113527719
XM_026915800.2 mRNA downstream 330358 4291951 ~ 4295240 (-) True sox9a
XM_026915506.2 mRNA downstream 609285 4013847 ~ 4016313 (-) True LOC113527563
XM_026914513.2 mRNA downstream 620721 4000449 ~ 4004877 (-) True sstr2a
XM_026915203.2 mRNA upstream 121868 4770544 ~ 4787576 (-) False ubtd1b
XM_026915202.2 mRNA upstream 121868 4770544 ~ 4787576 (-) False ubtd1b
XM_034309184.1 mRNA upstream 121868 4770544 ~ 4787576 (-) True ubtd1b
XM_034309628.1 mRNA upstream 161976 4810652 ~ 4827352 (-) False zdhhc16b
XM_026915838.2 mRNA upstream 161976 4810652 ~ 4820585 (-) False zdhhc16b
TU224811 other downstream 1770105 2852055 ~ 2855493 (-) True ndufa4
TU224780 other downstream 1811018 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other downstream 1819692 2800076 ~ 2805906 (-) False LOC113547504
XR_003404831.2 other downstream 2414619 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 3054525 1568286 ~ 1571073 (-) True G189199
trnap-cgg_2 other upstream 250098 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 251290 4899966 ~ 4900037 (-) True trnap-agg_2
trnap-ugg_3 other upstream 252460 4901136 ~ 4901207 (-) True trnap-ugg_3
trnap-ugg_4 other upstream 253652 4902328 ~ 4902399 (-) True trnap-ugg_4
trnap-ugg_5 other upstream 254945 4903621 ~ 4903691 (-) True trnap-ugg_5

Expression Profile