RNA id: XM_026915154.2


Basic Information

Item Value
RNA id XM_026915154.2
length 2656
RNA type mRNA
GC content 0.42
exon number 12
gene id aarsd1
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6756785 ~ 6766100 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCTCTTTACCCTGTTGTTCATTCAATAAAGTTTCTTTCCGGCTTCGTTTCAGCTGTGTAACATGGCTTTTCAGTGTCAGAGGGATAGTTATATGCAAGAATTTGTCACGTCGGTGGTGTCCTGTTCACCCGCCGAACTGAAGCTGGACAACAACGGCAAGAAGGAAAAAGTGAAGGGCTTCAATGTGATATTAAAAGACACCATTCTGTTCCCTGAGGGAGGCGGACAGCCTGATGACCATGGAACCATTGAGGATCTGCCTGTGGTGCGAGTGTTGAGGCAGGGAGCAGAGGCAGTGCACTTCATCAGCTCAGCTTTAGAGGAAGGCCGTGAGGTTCAGCTCAAGGTGGACTGGGAGCGTAGGTTTGATCACATGCAGCAGCATTCAGGCCAACATCTGATCACTGCCTTGGCAGACAAAATGTTTGGATATAAAACTACCTCATGGGAGTTGGGCCGTCAGCGCAGCAGTATCGAGCTGGATACAGCCTCTGTGAAGCCAGGAGAGATGGAAGCGTTAGAGGATGCAGTCAATAACAGGATCCGTGATCATGTCCCAGTCAATGTGCGCCTCCTCTCTATAGATGACCCTGATGTGGAGAAGGTAAGGAGCAGAGGGCTTCCTGATGATCATGCTGGACCAATCAGGATCATTGATATTGAGGGAATAGACACCAATATGTGTTGTGGGACCCACGTATCCAATCTCAGTCATCTACAGGTAATTAAGATTCTCGGGACGGAGAAAGGGAAGAAGAATAAGACCAACTTAATTTTCATAGCTGGAAACAGAGTATTGAAATACGCAGAGAAAAGCTACAACACTGAAAAGTTGTTGACGTCACTGCTGAAAACAGGGCCAGATGAGCATGTCGATGCCGTGGACAAGCTGCAGAAAACAGTGAAGCGCCTTCAGAAGAGTAACCTCACTATCCTCAGGGACATGGCTGTTCTTATAGCACAGAACTTCAAGAGCCAGCCAGCAAGAGGCGACTTCTTCAGTTTGCACAACAAGGATGGTGATAACGAGTTCATGAACATCATCGCCAATGAGATTGGCTTTCAGGACACAATCATTTTCTTGACAGTGGGAGAAGAGAAAGGAGCAGGACTTTTTCTGCTTGCAGGGCCTGAGAACGTCATAACTGAATTGGGGCCACGAGTAGTGGAGCTGCTACAGGGAAAAGGTGCCGGAAAGAACGGCCGTTTCCAAGGCAAGGCCAACAGCCTGGCAAAGAGAGCCGAGGTGGAGGCTCTGCTGCAGAAGCACAGCTGCCGGCGCGCTGCAGGAGAGGAgtgacagatgaacagatagatCCTGGTGCCCTGACTGCCTAAAGAGCACATGAAGCTTCAGCTGGAATGACAACAACCAAATCTCTGTAAACAGCCACTATGacaaatttatttgttaatCTTGTTCATCTTTGTGCTGTTGGGCAATCTAAGTTAAATCAGGTTTATTTATGAAGCATGTCTAAAGCAAGAAACATATGTGCTGTTAAGTTTATtcaatcaacaacaacaaaaacacacacacacaaagcccatGCAGATCAGTTACATAGATGTGCaaataattaaattgaattttgtaTGTTATcaacatttataccacagctctttTGATTTCTCGAATTGGTCAAACAGTCTTTTCTGTAACATTCAGACAGTAGTGCTGACttatttaaatcacaggtttgtagtAATGCACTCATTgtaatgttactgtttctatagtaacagtgcATACACAGTGACTTGACAATCTACATCTACAGGCTAATAATAAAGATGGATCAAAAATgctatttaatgaagaaaaacctataattgttgatgtggtgaagttttctgtaaggagatgtttactaTCTGTGGCTTCAGTCAGCAAGTTGTCCTCCACgagaagtcttcaggacagaggacttagTTCTTTCCGGTTTCTTTCAGGAGAGATaacaaaagagaggctggtaaaggaatgattgtttatagttgctataacgtaagtgataacaggagcttgtctcatggatgttgtGCAACAGTAcctgtaattataaatggttaaaaggcATGATgcattgtttattaataaattaacaaagtGTActcatgctgtggtataaataaaaaagaaaaataacccATTTACAAAAAGTCCTCTTGTCAAGAATCCTGTTGGAGATCCTAaatatctgttttatttatgtatgccTTGAGTGTATATGTCTAGAAGCAAGACTAGAAAGAGCCTGTGAATAGGAAATGCTGATAAATGACAAGCTTGCTCCatatattttgaatgttttattaaaaataaatgttttcaaaaatagaATTTTACAGAAGGCACAAGCAACTATCATTtccatacacacagacaaaaatgaGGGATTTCACAATACAGGCAAGCAGAACTTTCTGTTTGATTGcgtgaaataaaacaatgctCTTCATCCCTGTCATAAAGTAATACATCTCAGTTCTTAAAAACGAACCTCATCTAAAAGCATTTGTGTGCTTGGGCTAGACGCCAAGCCTATTCTCAGTACACTTAAAGAGCACTAAGATACGAGTTATgagattaaataaaacagtaatctAAACACAACACCGTAATCCTGAGCAATAAACAACTTTTTACAGTG

Function

GO:

id name namespace
GO:0006419 alanyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004813 alanine-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K07050 AARSD1, ALAX; misacylated tRNA(Ala) deacylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227335 lncRNA downstream 134142 6621470 ~ 6622643 (-) True G192014
TU227332 lncRNA downstream 210532 6545032 ~ 6546253 (-) True G192012
TU227257 lncRNA downstream 275616 6479767 ~ 6481169 (-) True G191950
TU227256 lncRNA downstream 277968 6478189 ~ 6478817 (-) True G191949
TU227253 lncRNA downstream 283202 6463488 ~ 6473583 (-) False G191947
TU227400 lncRNA upstream 23766 6789866 ~ 6790153 (-) True G192070
TU227391 lncRNA upstream 30011 6796111 ~ 6796506 (-) True G192061
TU227392 lncRNA upstream 33542 6799642 ~ 6800076 (-) True G192062
TU227407 lncRNA upstream 42105 6808205 ~ 6809758 (-) True G192075
TU227408 lncRNA upstream 42105 6808205 ~ 6808795 (-) False G192075
XM_026915156.2 mRNA downstream 4053 6747052 ~ 6752732 (-) True g6pca.1
XM_026915153.2 mRNA downstream 16203 6727581 ~ 6740582 (-) True kat7b
XM_026914793.2 mRNA downstream 110211 6637355 ~ 6646574 (-) True dlx4b
XM_034309642.1 mRNA downstream 162395 6546941 ~ 6594390 (-) True itga3b
XM_026915558.2 mRNA downstream 243700 6507850 ~ 6513085 (-) True abi3b
XM_034309520.1 mRNA upstream 70337 6836437 ~ 6847966 (-) False a1cf
XM_026915451.2 mRNA upstream 70337 6836437 ~ 6847960 (-) True a1cf
XM_026915452.2 mRNA upstream 70337 6836437 ~ 6847957 (-) False a1cf
XM_026915453.2 mRNA upstream 71324 6837424 ~ 6847955 (-) False a1cf
XM_026915361.2 mRNA upstream 281471 7047571 ~ 7232075 (-) True pcdh15b
XR_004579320.1 other downstream 162395 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 980765 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 1142831 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 1283315 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 1454580 5302113 ~ 5302205 (-) True trnai-uau_5
trnap-agg_9 other upstream 1692227 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 1709159 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 2081562 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 2310689 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 2311018 9077118 ~ 9077199 (-) True trnal-uag_4

Expression Profile