RNA id: XM_026915155.2


Basic Information

Item Value
RNA id XM_026915155.2
length 1682
RNA type mRNA
GC content 0.47
exon number 5
gene id g6pca.2
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6754193 ~ 6757138 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATGCTCAAGGCTAtcagtcctctctctctctctctaatcaaCAGTCAGCTTTTTTTTGAAGAGGAACGCCGTCAGAATGAACACGCTGATGGATGCTATGCATGGCTATGGTGTGAGCTCCACACAGTATCTACAGACTCACTACAAAGACGCACAGGGCTGGTTCCTGTTTGTCTCCATTGCTGCTGACCTACGCAACaccttcttcatcttcttcccCATTTGGTTCCACCTGAGGTCATCTGTGGGCATCAAACTCATCTGGGTGGCCGTCGTTGGGGATTGGCTCAACCTTGTCTTCAAATGGATCCTGTTTGGAGAGCGGCCCTACTGGTGGGTCCACGAGACACCCTACTACAGCAACATGTCTGTGCCGCACATTGAACAGTTTCCCATGACCTGCGAGACAGGCCCAGGTAGTCCATCGGGTCATGCTATGGGTGCAGCTGGAGTTTACTATGCCATGGTcacctccatcctcaccatcaTGCTGAGCAAAAAGGAGACATCTTCCACTAAGGCACTGTACTTGCGTGGCACCCTCTGGACTCTTTTCTGGACCGTTCAGATCTGCGTTTGTCTCTCTAGGGTCTTCCTTGCTGCCCATTTCCCTCATCAGGTCATTGCTGGGGTAATTACAGGTATGATCGTGGCTGAAGTCTTCAACAAGCAAAGGTGGATCTACTATGCCAGCCTGCAGAGGTACTTCAACATCACTCTGGTCCTGCTTGTTTTTGCTGTAGGCTTTTACGTTCTCCTGAAGGCTGTGGGTGTGGATCTGCTGTGGACTCTGGAAAAAGCTCAGAAATGGTGCGTGAACCCAGCGTGGGTCCACATGGACACGACGCCATTTGCCAGCCTGCTGCGTAACATGGGCACCTTGTTCGGTCTGGGCCTGGGTCTGCACTCGCCACTCTATACTGAGAGCAAGAAGAGCACCAGTGCCCCCTTCAGGGTCGGTTGCATAATCAGctctctcctcctgctccaCCTATTCGACTCCATCAAGCCACCGACGCACACAGCTGCACTCTTCTATCTGCTCTCGTTCTGTAAGAGTGCCACTGTTCCGCTGGTCACCGTCAGCATCATTCCGTACTGCGTGTCCGGAGCCCTGAGTTTACCAAGCAAGAAACACCTCTAAAAGAACTTCTGAAAGACAATTCTAGTAAGAACACAAACCCTCAGCAGTATTTTCTAGCTTTCATTCTTTACAGCACATCTCTTCAGCTATACTAACTCAACTTCAACACCAACATGTGCTTGGTTTGGTTTTCTTCTCCCCCTTCCCCTACCCCAccaaacaaagaaagaagacTTCCTTAAGCACTGTAAAAAGTTGTTTATTGCTCAGGATTACGGTGTTGTGTTTagattactgttttatttaatctcATAACTCGTATCTTAGTGCTCTTTAAGTGTACTGAGAATAGGCTTGGCGTCTAGCCCAAGCACACAAATGCTTTTAGATGAGGTTCGTTTTTAAGAACTGAGATGTATTACTTTATGACAGGGATGAAGagcattgttttatttcacgCAATCAAACAGAAAGTTCTGCTTGCCTGTATTGTGAAATCCCtcatttttgtctgtgtgtatggaAATGATAGTTGCTTGTGCCTTCTGTAAAATtctatttttgaaaacatttatttttaataaaacattcaaaata

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0004346 glucose-6-phosphatase activity molecular_function

KEGG:

id description
K01084 G6PC; glucose-6-phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227359 lncRNA upstream 25802 6725985 ~ 6728391 (+) True LOC113527389
TU227354 lncRNA upstream 57223 6696732 ~ 6696970 (+) True G192029
TU227167 lncRNA upstream 280727 6463389 ~ 6473466 (+) True G191868
TU227164 lncRNA upstream 293179 6460811 ~ 6461014 (+) True G191866
TU226989 lncRNA upstream 483308 6268524 ~ 6270885 (+) True G191719
TU227373 lncRNA downstream 21026 6778164 ~ 6785596 (+) True G192043
TU227745 lncRNA downstream 642205 7399343 ~ 7399628 (+) True G192394
TU227775 lncRNA downstream 717299 7474437 ~ 7475004 (+) True G192422
TU228011 lncRNA downstream 1181903 7939041 ~ 7939584 (+) True G192591
TU228075 lncRNA downstream 1312005 8069143 ~ 8071592 (+) True G192650
XM_026915158.2 mRNA upstream 8392 6739753 ~ 6745801 (+) True ptges3l
XM_026915161.2 mRNA upstream 26049 6725327 ~ 6728144 (+) False LOC113527389
XM_026915160.2 mRNA upstream 27375 6725327 ~ 6726818 (+) False LOC113527389
XM_026914756.2 mRNA upstream 131546 6618651 ~ 6622647 (+) True dlx3b
XM_026915208.2 mRNA upstream 207940 6526233 ~ 6546253 (+) True ace
XM_026915438.2 mRNA downstream 38869 6796007 ~ 6815445 (+) True sgms1
XM_026915437.2 mRNA downstream 38869 6796007 ~ 6815445 (+) False sgms1
XM_026915436.2 mRNA downstream 48040 6805178 ~ 6815445 (+) False sgms1
XM_026914654.2 mRNA downstream 65602 6822740 ~ 6836383 (+) True asah2
XM_026915240.2 mRNA downstream 104933 6862071 ~ 7015737 (+) False prkg1b
TU227356 other upstream 25802 6725321 ~ 6728391 (+) False LOC113527389
trnas-gcu_4 other upstream 523890 6230222 ~ 6230303 (+) True trnas-gcu_4
trnas-gcu_3 other upstream 529008 6225104 ~ 6225185 (+) True trnas-gcu_3
trnal-aag_3 other upstream 530087 6224025 ~ 6224106 (+) True trnal-aag_3
trnas-gcu_2 other upstream 530576 6223536 ~ 6223617 (+) True trnas-gcu_2
trnap-cgg_4 other downstream 14169 6771307 ~ 6771378 (+) True trnap-cgg_4
trnap-ugg_14 other downstream 15303 6772441 ~ 6772512 (+) True trnap-ugg_14
trnal-uag_1 other downstream 16465 6773603 ~ 6773674 (+) True trnal-uag_1
trnap-ugg_15 other downstream 17618 6774756 ~ 6774827 (+) True trnap-ugg_15
trnap-ugg_16 other downstream 18768 6775906 ~ 6775977 (+) True trnap-ugg_16

Expression Profile