RNA id: XM_026915176.2


Basic Information

Item Value
RNA id XM_026915176.2
length 5243
RNA type mRNA
GC content 0.45
exon number 15
gene id prkcea
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17732760 ~ 17792629 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacgcacagactcCCTTCATCCGGCGCGGCTCGATCAACCGACGCGTTTTGCGCACTTCCTGCTCCGGCCGTCAGGCGCAcgggagggacagagagagagagagagagagagagagagagagagagggaaagggaggaATGCTGCAGGAAAAATCAGTACAGATCTGGTGTATCCACTGAACAGACAAGCGGCTCAAATGCCGCGGAGAATTCCTCACGCCCATAAAACGCGATCGAGACAAGCAGACGGCGAGCCCCAGCTGCTCGGGAAGAAAGAAGATCCCTGAATGGCCAGCTTGggttaatctttttttctctcttgatggAAGAGGACTAGCTGGAATGcaccgctgctgctgctgctgaagacCTTCACGTTTCATTCGGGGCCGTTTCCTCTGAGATCAAGATCTCCGCCAGTTTATGTTGACATGGTTTGCCTGCTTTAAGCATCGCCCTGATTCCAGCTTGTTATCGCTTGGAGAAGAAAACTCCACCGAGATTctgttcagagagagagaacagaccCATAGAGGAGAGGGGATTCGTTTGTTTACGCGCGTTCACGATCGTAAACAAAAGCAGGAGAATCAAAGTCCTTGCTTTTCCTGCTTGTTCCTTTTGCGCTCGTAGCCTGCATTCATTTTCAGAGAGCCTGGGTTGCTGGACGTCAGGAAAAAAActcagtatttttaaaaatcaaagcaACATCCAGTAAAACTGATCCTTACTAATGACGTGATGGTAACTACATGCAAAACATTTCCGCTGGATTAAAGTTTGACACTGTAAAGGTAAGCAGTTGCCTGTTCTCACATCATCATGGTTGTTTTCAACGGCTTGCTGAAGATAAAAGTCTGCAAAGCTCTGGACCTGAAGCCCACACCATGGTCACTGCGCCATGCCGTGGGCCCCAAGACCCAGACCTTCTTGCTGGACACATATATTGCCCTCAACGTGGATGATTCACGTGTGGGCCAGACCTCCACCAGGCAGAAGACCAACAGCCCGGCATGGAACGATGAGTTTGTCACAGAGGTATATGATGGAAAGAAGATCGAACTCTCAGTTTTTCATGACTCCCCGATCGGCTATGATGACTTCGTGGCCAACTGCACCATCCAGTTTGAAGATTTGCTGCAGAATGGCAGTAGGCACTTCGAGGACTGGATTGACCTGGAGCCTGAGGGCAAAGTCTACGTCATCATTGACTTGTCAGGATCctccagtgaagCTGCTGCATCTGGGGAAAATGAAGAACGAGTGTTCCGTGAGCGCATGCGACCCCGCAAACGTCAGGGGGCAGTACGCAGACGTGTCCATCAGGTGAACGGACACAAGTTTATGGCCACTTACCTGAGACAGCCCACCTACTGCTCCCACTGTCGTGACTTCATCTGGGGTGTATTAGGAAAACAGGGATACCAGTGTCAAGtttgtaCCTGTGTAGTCCATAAAAGATGCCATGAGCTCATCATCACAAAGTGTCCCGGGCTAAAGAAGCAGGATGACACTCCAGAGGAGGTTGGCTCTCAGCGCTTCAGTGTAAACATGCCTCACAAATTCAGTATCCACAATTATAAAGTACCAACCTTCTGCGACCACTGCGGCTCTTTACTCTGGGGGCTGATGCGACAAGGGCTGCAGTGCAAAGTTTGTAAAATGAATGTTCACCGGCGTTGTGAGACTAATGTAGCTCCTAACTGTGGGGTGGATGCAAGAGGAATCGCGAAGGTTTTGTCTGATCTTGGAGTGACACCAGATAAGATCTCTAACAGCACCCAGCGCAggaaaaagTTGACTCCGGGCCAGGACGCCCAGCCAGCCACCACAGAGCCAACCTCATCAGAAGAATCTGATCGCTGCAAATCAGCTCCAACGTCACCTTGTGAACAGGagCTGGCCGAGCTTGAAAGCATACGTAAGGCTTTGTCATTCGGTCAAGAGCACAAGTCTTCCTCGTCCTCTTCTTCCGTAGCCACTGGGCTCCAGGATACAGTGAATGAGGGCCATGAGAATGGAGACGTGAAGAGTGTTCAGTCGAAGAGGATGAGCCTTGATCACTTTTCCTTTATCAAAGTGCTGGGCAAAGGCAGCTTTGGgaagGTGATGCTAGCTGAACTGAGAGGCACAGATGAGGTGTATGCTGTGAAGGTGTTGAAGAAAGATGTCATCCTGCAGGACGATGATGTCGACTGCACTCTGACTGAGAAACGCATCCTCGCTCTGGCCAGAAAACACCCCTACCTGACCCAGCTTTTCTGCTGCTTCCAGACCAAGGATCGGTTATTCTTTGTTATGGAATATGTGAACGGGGGAGACCTGATGTTCCAGATCCAGCGCTCACGGAAGTTTGATGAGGCCCGTTCACGTTTTTATGCTGCTGAAGTCACGTCTGCCCTCATGTTTCTGCATCAAAATGGAGTCATCTATAGAGACCTGAAGCTCGATAACATTCTGCTGGATGCCGAAGGTCACTGCAAGCTGGCGGACTTTGGCATGTGTAAAGAGGGAATCCTGAATGGTgtcaccaccaccaccttctGTGGCACTCCAGACTACATTGCCCCTGagATCCTTCAAGAGCTGGAGTATGGTCCATCAGTGGACTGGTGGGCTCTGGGCGTGCTGATGTACGAGATGATGGCAGGTCAGCCACCATTCGAGGCCGATAATGAGGATGATCTATTCGAATCTATTCTCCATGACGATGTACTCTACCCTGTCTGGCTCAGCAAAGAGGCAGTCAGCATCCTCAAAGCATTTATGACGAAGAGCCCAAATAAGAGGCTGGGCTGTGTGGTGTCTCAGGGGCTGGAGGAGGCCATTAAAGTTCATCCCTTTTTCCGGGAGATAGACTGGGTTCTGCTGGAGCAGCGGAAGATCAAACCGCCATTTAAACCACGTATTaAAACCAAGAGGGACGTTAACAACTTTGACCAGGATTTTACACGTGAGGACCCCATCCTTACCCCTGTGGATGATGCCATTATAAAGCAGATCAACCAGGAGGAGTTCAAGGGTTTCTCCTATTTTGGAGAAGAGGCACTGTCTTAAATGTCAGCCTCTCAGCACCTGTtcagacacacatacaacaacattctctctcacacacatacacatgcacacacacacatacagacacataaacacacacacaagtggtgACAAATGTGGACAGAAATGCTGATATTGGGGTTAAGGCAAGAGGTCCGGGTGTACGTCTGAAGCTACTACTGCTTTTGTTCTTTTCCACCTCCAATCGCTTCCTCTTGCCTTCTTTCActtcagctctttttttttcatcccttGCCTCTCCAGCCTCACAGATGCTCCGTTAATATAAAGCTACTTCCCAAACTGCTCAAGAGTGTCTGCTTTTGGAGAGGAGGGGCGGGATTGCACTATGTCGAACCAAATTTGATTATACCAATGATTGTAGTAACGTTAGCAATCAgatagaaatgaagaaaaaacaatgacaatgaTGTCCAAAAAGGAAGAATATTATCCTGCATAAATGACAAtgaaatgtgttgtgttgtgcagtCTAATTCCTTTGTGTATTCAGGTGAACATTTTGGgagcaattttatttataataacgttactatacagtatatttcttgATAGTGTTATGAAGGCCTGCTGTATGTGGGTTGTGTTGAACCGAAGTGTTGACTGGTCGGTCCGTGCCcgtgtgcatgtgtttgcatGAGCGAGTGCACATGCCATctttaaatctctttattttggttgttgtgttttttttctcacacattCATTCTCTTTTCCTGGCTGCTATGTGTGTTTAGTGACCTGCCACTATGCAACAGCAGACATAGAGGCCAGTGCCCGTAGCCGTCTTGCCCTTTGTACAGAGCGTAATGTACATACTATCTGCTCCAAAGCCTGTGAACGCTTCAAATAGAGTAGTCAACTGTTGCATGGTCTGGCAAATGAAGCTATTATTTGAGTTGTACTATGTACTAAATGtatggagagaaaaaacaagTTTCTGATATTCATGTGCAATACACTGAACATACTTTTCagttattattcttattcttttgctgttgtttgttcTTCGTTTGTGTTGTCGCTTTCCTGTCCATCAGCCTTGCTGATATTAAATGGAGAAGAGTGTTCGATGGGTCAGAAGCCTGGCTGAACAGCAGGATGTTGATGTTGAATTAATGAGgagggtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgctctctctctctctccagatcTCTACTCATGTACATAAAGCATAAACTGTGGAATGTagcttaaaaaaatgtgtgcgtgctcataatttattttatatcgtACACATAGTGACCCTCTTGTGTCAATAAGCAGGTCATTTCCTGCTTACGCATGTTTCAGATGACTAAGCCTTGTTATTACACAGCTCCATGATTCTTACAGAAGGTTTTCCCTGTCTATCTTATACATTTAATAGTGAAGTcagttatttataaaatgtgaaCAAACATGACAGAGAGGTCAATAAGAGAAACAGGGTACATTTCAGGCGCACTAATTAAACCTTACTGGAATGTGACAACTTTGCTTGAACAACTCAGTGGCAATTTGACAAATCTTTAGAGTTTTGTTTCCAAAGGCGTTCTTTTTGATCATTCATCACTTCTAGTTTTTTTCCCTTAGTCTTAAGTGTTTATTCTTTGAAACTGCATTGTATTTAACTGTTTGTCGCTCCTTCTTTCTGTCACATCCCAAACATTCTCTCTGCTCTGCTTTGTTCTTTCCACTTTCTTTTCtactgtaaatgaatgaatttgctATTTAGGAATCCACAATGGTCTGTCTtctaagtaaataaaaagaaatagcTAAAATATTACCTCTTAAATTAAGTACAAAGGTTTGTCTggctgaatattaaatatttgtgcaTACAGTATTACAATACATAAGCATTTCATAATGTATGATAGTGctgtatgtattatatacatCTTGTATTAGATTTTAGTTTGTTTGGTGAAACTTTGTGTGAACAgagaattctctctctctttttttcctggatacactatctctctctctctctctctctctctctctctcagtgtaaGCATTTTATTATGTGCCAAACGTACTGTAATCTAAAGGATGTGAATGtgtttggtttttctttttgatCCTATTAAATACTATGATGTCAAACCCTGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K18050 PRKCE; novel protein kinase C epsilon type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234567 lncRNA upstream 61815 17670180 ~ 17670945 (+) True G198088
TU234570 lncRNA upstream 156174 17575940 ~ 17576586 (+) True G198091
TU234559 lncRNA upstream 158527 17572305 ~ 17574233 (+) True G198081
TU234560 lncRNA upstream 160755 17570664 ~ 17572005 (+) False mta3
TU234562 lncRNA upstream 163598 17568378 ~ 17569162 (+) True G198084
TU234642 lncRNA downstream 70910 17863539 ~ 17912523 (+) True G198158
TU234657 lncRNA downstream 122797 17915426 ~ 17918595 (+) True G198170
TU234661 lncRNA downstream 141401 17934030 ~ 17934370 (+) True G198174
TU234664 lncRNA downstream 144903 17937532 ~ 17937771 (+) True G198177
TU234706 lncRNA downstream 192534 17985163 ~ 17985468 (+) True G198213
XM_026915577.2 mRNA upstream 20948 17708916 ~ 17711812 (+) True six3b
XM_026914980.2 mRNA upstream 63523 17643020 ~ 17669237 (+) True ppm1bb
XM_026914979.2 mRNA upstream 67382 17643020 ~ 17665378 (+) False ppm1bb
XM_026915018.2 mRNA upstream 160695 17545793 ~ 17572065 (+) True mta3
XM_026915019.2 mRNA upstream 160695 17545793 ~ 17572065 (+) False mta3
XM_026914794.2 mRNA downstream 3399 17796028 ~ 17822290 (+) True epas1a
XM_026914964.2 mRNA downstream 40176 17832805 ~ 17850858 (+) True glud1b
XM_026914800.2 mRNA downstream 76233 17868862 ~ 17878282 (+) True mmrn2b
XM_026914801.2 mRNA downstream 76233 17868862 ~ 17878282 (+) False mmrn2b
XM_034309213.1 mRNA downstream 76542 17869171 ~ 17878282 (+) False mmrn2b
trnai-uau_6 other upstream 155384 17577283 ~ 17577376 (+) True trnai-uau_6
TU234137 other upstream 869265 16855770 ~ 16863495 (+) False anapc16
XR_004579176.1 other upstream 4174247 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 4174331 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 5259021 12472683 ~ 12473739 (+) False LOC113527673
TU234778 other downstream 362522 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 649257 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 1013456 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other downstream 1013494 18806123 ~ 18811512 (+) False si:ch211-221j21.3
XR_004579324.1 other downstream 1734013 19526642 ~ 19566684 (+) False LOC113527713

Expression Profile