RNA id: XM_026915191.2


Basic Information

Item Value
RNA id XM_026915191.2
length 1589
RNA type mRNA
GC content 0.47
exon number 5
gene id hoxb6b
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11544801 ~ 11561935 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCAGGGCGCAGTCAGTAACACGTCTGTCTTCGTGTTTACGTTTTTTCGTTGTTTCTATTAGACTTTGTATATTAgaaattgtaatttaatttatcgAATTGTGTTTAAAGATGGCTGGAGCTTACCAACACAGTGCTAGTAGCCGCTCGATTCCTTCAGAGAAGTCAGGGAAGAGGGAATGGATCAAAACTCACAAAGCGAATATATTTTTGATCTTTCGTTTATTTGGTGTATTTGACTATCCAACCAGATCTTCTCGATTACACGCGGATTTGAAGAATCGAAAAGAAATGCCTGATTAATTTGGAAAGCACTGCTGCGAGCCGATGATAAACGACAAAGGAAACAGCGAATGTGTGCCTGGAAACCAGGTGTGAGAGAGTCCTACAACACGTCCCCCCTCCGAAAAAAGTGCAAAAGCCAAAAATGTTGCAGCGCAGgTACTATATTATCTGTCTGAGGTTCTCCTCAGGGTTTCCGGCGGAAGGGTTGGCTGGTCTCCCAGCAAGAGGCCTCTGTAACGAATCTGTCACGTGACGCAAGTTTTGCCAGAAGCTCTACACAATGCAGAACAAGACAGACAACATCAACACCTCATTATTGGGCAGTGACTCGTTTAAGGGTGACGACACATTTGGATACAGTGATACAACACAAGTTTCACTCTCTGTGGCACTGCGGGAAAACGACCGAGAGATGAATGCTTGCTCATTGCCGAAGGCTGCCATGGATGACACTCGGCACTGCACTCCGAGTGAACTTTATCGAAGCTATACAGAATCACCCCTCCTATCCCCTACAGGAGAACCTCACAGCTCCTCAATCGGGGACTTTACTACTGACGGCAAGCTGGTCTTCCCCTGGATGACAGAGTCTATGAAAAAATTCAAGCAGAAAAGTCACAGCTTCTGCGATGCATCCAGCGGTGAGAGCCGACCCGATGGCTCAGGTGGCAGTAAAAGGACGCGCACGTCGTACACCAGCAATCAGCTGCTGGAGCTGGAGAAAGAGTTCCACTTTAATCACTACCTAGGCAAACCGCGACGCCTTGAGATGGCCAACCTACTGAAGCTTAGCGAAAGACAGATCAAGATATGGTTTCAGAACCGCAGGATGAGGCataaaaaagacacaaagtTGAAAGGAATCGGCCCGCCCCCTACTCCGAATGCGTGTCTTCCATCGTCCCTGCAAATGGACATTAGTGCTTCACTGAAATCACCTACAGAGAATTACACGAATCCCCCGTCCGTTAGCAATGCTCGAAATGATGCATGCTGTATGAGGCAGGTTTTCAGAAATTCCGAGGGTCATTGGCCTTACGCGCAAAAACACAGACCTATAAATGACCAATACTCTAGAAGGCTAAATGAGGGAACTGGTTTCACCTTTAGTAGCCAAGGCTGTTTCAGTAATGTTGAGGGTAACTGTGAGGATTTTATAGCGTTCTCCCAGCCCCAAATGCGCAGGCTTAGTCATCTTAGATCTCATAATATGGCTGGTCAGCAGAGAGCAGGTCTAAATCACAGAACATGGCCCCTAACTTACCCCAGTGAGCAGTGAAAGCAATCAACTGTCTGAACCCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230438 lncRNA upstream 165611 11378461 ~ 11379190 (+) True G194571
TU230242 lncRNA upstream 296694 11247763 ~ 11248107 (+) False si:ch73-139e5.4
TU230183 lncRNA upstream 337825 11135232 ~ 11206976 (+) True G194360
TU230204 lncRNA upstream 424251 11120318 ~ 11120550 (+) True G194380
TU230113 lncRNA upstream 448623 11093163 ~ 11096178 (+) True G194293
TU230527 lncRNA downstream 30957 11592892 ~ 11593091 (+) True G194627
TU230523 lncRNA downstream 35595 11597530 ~ 11602441 (+) True G194623
TU230532 lncRNA downstream 52454 11614389 ~ 11621269 (+) True tmem106a
TU230688 lncRNA downstream 156962 11718897 ~ 11719113 (+) True G194748
TU230779 lncRNA downstream 476568 12038503 ~ 12038728 (+) True G194828
XM_026915449.2 mRNA upstream 2834 11539694 ~ 11541967 (+) True hoxb8b
XM_034309120.1 mRNA upstream 8677 11528894 ~ 11536124 (+) True ttll6
XM_034309121.1 mRNA upstream 8677 11530788 ~ 11536124 (+) False ttll6
XM_026914836.2 mRNA upstream 22086 11497318 ~ 11522715 (+) False srcap
XM_026915192.2 mRNA downstream 996 11562931 ~ 11564241 (+) True hoxb1b
XM_026915434.2 mRNA downstream 8721 11570656 ~ 11597077 (+) True skap1
XM_026915063.2 mRNA downstream 40664 11602599 ~ 11612358 (+) True nbr1a
XM_026915002.2 mRNA downstream 51964 11613899 ~ 11619906 (+) False tmem106a
XM_034309334.1 mRNA downstream 52506 11614441 ~ 11619906 (+) False tmem106a
trnaq-cug_16 other upstream 258533 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 1480175 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1909734 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2030966 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2032170 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 910748 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1921366 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1921366 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5293835 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 6015348 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile