RNA id: XM_026915194.2


Basic Information

Item Value
RNA id XM_026915194.2
length 3791
RNA type mRNA
GC content 0.39
exon number 2
gene id hoxb6b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11544801 ~ 11561935 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATAATCTTTCTGAACTATTTGTGGGTATAAACACTAATGAAAAAGCCCTAGACAGGAATACCGCATTAAACTGCGGCTTCATGGCTACTCGTCAACAAAAGGAATTTCTGAGAAAATTGTGACCTGAGTTAtatcatgatttaaaaatacagactttgtaaaaaaaaaaaacagccagcgAAGCCAATAGACTGGCGTTTTTAACAGCCGAGTATGACTGattacttgaaacagagagatgtGGTGTGGTGAGCAATCCGCGTGATCAGGGCTACAGGAGCCTACTGATGGGAGCTGATCTCTGCTGACTGCTGGTGCATTTTCCTGGAATTATTATTGGCCACATTGTTGCCACCTTTCTagtgaaaatgatttaatcTACGTGCATATTGCAATCTATAATGGCTATAATATTGGTTATTGGTAATATTTTACTGCTTAGTCACGATGAAGCGGTTAGCTGCAGTTGTGGCAGTGTATCTCAGGATGCAGTCAGACCTTCAGCAGTCCCTCAGAGGATGTTACTCCTTTAGCTTATTGGGATTTCGAGTTTATAATTAGGCACGCATTTATTTAGGCTATGCATAATAATcagtgaatttattattatgttttccATTACGAAGCCTTTAATgactgttaattattttttgtcctTCATAATGAAAcctattaatattttatgttttttgattgttttgtgtTAAGACATAATGCTGAAACAAAAAATAGTGTTTTTACTGTAATGGCGCAATGTTACCTCATTTTTTGCTCTGTGATGCCATCTAGTGACGAGAGAATTGTGCGAATTTGACCATGCAATGATTGTTCTGAGATTTGAATTCAGGCACCTTGTCCAAGATCCAAGAGCCAAGGAGAggaaaaaatttatatatatatatatagaacaaAACTGTTATATCAAACtgttatatcatatatatatatatatattattgtgtgtgtgtgtgtgtgtttagttattTGACCTTGAATAGTACATTTTTGCTTGGAAAACACGCCTGAGCACTGCTGTATGCTGAGCTTCCTTATTGCATTGACAAGATGAATTCTATCCTTAAATGAAATCACTTGGTTTGTTTGAAACAGCATAGCCCAGGAAGCCCAGTAAACAAATTTAGGCTATGCAttcttaggggaaaaaaacccttaaGAATTGGATAGCTAAGGGATTATTAAAGGAGTTCTAGGTGGAGCCTTTTTTAAACGATAACCCTTTGTTTTGGGGTTCTGTGCATTTTTTGCAAACCGAAGAGGGACAAACTGAAAAGCATTTAGGCTTATAGTTTTAACAttatttctaagagtgtaagTCTGATGAAAACGATGGGGCCTATGGCTGTTTGAAGGTTGTTGTTAAAATGTGGTATAGCTTTTATTATGGTTTATGCACTGTGAATTTTGATACAATTTTCGTACTTTCGATAGCCCACTAAAAACATTcgtttaacaaaaatacagtaataataatactgatgtGCTTAGGATGCCACATGTGATGTCAGATCGGCCCAAACCATcattttgttgcttttgtttttgtagatGTCTGACACTTTATATGtgatattttctacattttaaggTTCTTATGtaagaataaaattataaatcgCAAAACTGGTTTAACTTGGGCCATAAATTATTGGTAATGCTCCTTAAATAGATTAGGCTATCGAATTCCAATGGCCATTGTGCTGAACACAGCGTTACTGctgtgtgtttacttttttaaagctCGTCCTTCTGTAAaggttttaattatttgaattgACGTGAAACTAGAGAAAAGTACAATCATAAAGTTACATTCATAAATTGTTTGAGTGATTCGTGAAGAAAAACACTCTTCGTGAGTTTAATTGGGAAATAATAACCTTTTGTAAAGCAAGGCATTGTAAAACAGACAAGACGTTTACTGACAAAGTGTAGAGCTTCCTAtcgtaaatattaaaaaaaaattttttttaagtttggaTACCCAATAACTCAATAGTACAATAAGAAAGTTGCATTCATAAGATTTTATGTATAGTCTTTCGTGAAAAACACTTTTCGTCATGCCCTTTAGGAAGTTATATTGTGAAGTTATATTGTGAAGCAAGCCAGTGTAAAAATGCTGGGCATTTGCTGGCATGTAGTCTACATAGCTGTGCTATATTATGTTTCTAACGAACAGCGAAAATATGGTATTATACGCTCGTCGAGAGGGTTACTGCAACTGTCCATCAGCAATACACCTTCAGTATATTGTCTCCTGTTTTTGTTCCTCccctcattttttctttttttattttgagcgGCACTTGCGTCACTGCAACCggaattatataaatatatttatatatgagaATTATAAGGGATTTTATATGCATTGGGGATTCCATCCAGTGCAACAAGAGTCCCCCTCCCTTAATGCTCGTCTATTGGCTGAGAGGCTCGGGATTGGTCAGACAGTGATCAGCTGGTGCGTTTCCCTACTCGCTCACATTGGCACCTCGCCACCCCCCTTCGGCTAAAACCAAACCTCACATAAAGTAATGGCAAAACACACTTGGactataaaacacaacaaatcatAACACTCGCACAATAACAGTGGCCACCCAATGAGTTCCTACTTCGTCAACTCAACTTTTCCCGTGTCTCTAGGCGGGGGACAGGATTCTTTTCTGAATCAGTTACCGTTATATTCTTCTGGATATACCGACACTTTGAGACACTATCCAAGCGCCACGTTCGGAGCGAGCAATGTCCAGGAGAAGGTGTACTCCAACTCTTACTACCAGCAGGCTAGCGGAGTGTTCGGGAGAAGCGGCTCAGGCGCTGCGTGCGATTACGCCGCCTCCAGCATATACCGAGAGACGGAGCGCTCATCGTGTCCTCTCGGAGGCTTGGAGGAGTCGCTGGCTCTCACACAGGGGCACAGCAAGGCGGAGGGCTCGGAGCACACTTCAGACACTTATTCCTACAGCGAAACCAAGCCCTGTGCCCCTGTTTACCCATGGATGCAGAGGATGAACTCGTGTAGCGGCATTCCTGGCACCACTGGCCGCAGGGGTCGTCAGACATACACTCGATTTCAGACTCTTGAGTTGGAAAAAGAGTTCCATTTTAATAGATATTTGACCAGAAGGCGCAGGATTGAAATTTCGCACGCGCTGTGTCTAACAGAGCGACAGATAAAGATCTGGTTCCAGAATCGGAGAATGAAgtggaagaaagaaaataaagtaataaactcTGAAAAGACCAGCGAAGAGGAGGATGGTGGAAAGACGGGATAGACGATTTCCATATGCACtgtgttgtaaataataaacaagtcCAATATTTTTACCCACAGTACATAGGCTATAGTATTTTCATGTAGATGTACGAATTTAACCAAACAAAACGGTTATCTATTTAAGGCTTTGTTCAAGTGCAAAAGCTAGTAACCCTCTCAGGGTTGTCAAACATGCATCTTTctaatttctgtaattttcgCCCCATTGTGTTCTATTTTCCGCCATTAGACCAATTTTATTACCTGGCATAAAATGAATGGCTGAATTTTCACCCTCTTGCTTCCACATCCTAGAACGGGCTTATAGTGAAGGCTAAGGGTGACAGGTTTTACTGCTGACATATTGGACATTCGTGTGTTTAAACGTTCTCgtgtgtaatttattttgttCGTTACGTTTGTGTATGTGGATGCACTGATAAAAAAATAGTGAACTTTGTTAGCAATGCCATTTTgccaataaaatatgtttaaccaTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09305 HOX_5; homeobox protein HoxA/B/C5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230438 lncRNA upstream 166254 11378461 ~ 11379190 (+) True G194571
TU230242 lncRNA upstream 297337 11247763 ~ 11248107 (+) False si:ch73-139e5.4
TU230183 lncRNA upstream 338468 11135232 ~ 11206976 (+) True G194360
TU230204 lncRNA upstream 424894 11120318 ~ 11120550 (+) True G194380
TU230113 lncRNA upstream 449266 11093163 ~ 11096178 (+) True G194293
TU230527 lncRNA downstream 43253 11592892 ~ 11593091 (+) True G194627
TU230523 lncRNA downstream 47891 11597530 ~ 11602441 (+) True G194623
TU230532 lncRNA downstream 64750 11614389 ~ 11621269 (+) True tmem106a
TU230688 lncRNA downstream 169258 11718897 ~ 11719113 (+) True G194748
TU230779 lncRNA downstream 488864 12038503 ~ 12038728 (+) True G194828
XM_026915449.2 mRNA upstream 3477 11539694 ~ 11541967 (+) True hoxb8b
XM_034309120.1 mRNA upstream 9320 11528894 ~ 11536124 (+) True ttll6
XM_034309121.1 mRNA upstream 9320 11530788 ~ 11536124 (+) False ttll6
XM_026914836.2 mRNA upstream 22729 11497318 ~ 11522715 (+) False srcap
XM_026915193.2 mRNA downstream 138 11549777 ~ 11552541 (+) True hoxb5b
XM_034309122.1 mRNA downstream 3565 11553204 ~ 11561935 (+) False hoxb6b
XM_034309123.1 mRNA downstream 8745 11558384 ~ 11561935 (+) False hoxb6b
XM_026915192.2 mRNA downstream 13292 11562931 ~ 11564241 (+) True hoxb1b
XM_026915434.2 mRNA downstream 21017 11570656 ~ 11597077 (+) True skap1
trnaq-cug_16 other upstream 259176 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 1480818 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1910377 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2031609 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2032813 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 923044 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1933662 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1933662 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5306131 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 6027644 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile