Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034309124.1 |
| length | 1404 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 3 |
| gene id | hoxb6b |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 11544801 ~ 11561935 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU230438 | lncRNA | upstream | 165960 | 11378461 ~ 11379190 (+) | True | G194571 |
| TU230242 | lncRNA | upstream | 297043 | 11247763 ~ 11248107 (+) | False | si:ch73-139e5.4 |
| TU230183 | lncRNA | upstream | 338174 | 11135232 ~ 11206976 (+) | True | G194360 |
| TU230204 | lncRNA | upstream | 424600 | 11120318 ~ 11120550 (+) | True | G194380 |
| TU230113 | lncRNA | upstream | 448972 | 11093163 ~ 11096178 (+) | True | G194293 |
| TU230527 | lncRNA | downstream | 43253 | 11592892 ~ 11593091 (+) | True | G194627 |
| TU230523 | lncRNA | downstream | 47891 | 11597530 ~ 11602441 (+) | True | G194623 |
| TU230532 | lncRNA | downstream | 64750 | 11614389 ~ 11621269 (+) | True | tmem106a |
| TU230688 | lncRNA | downstream | 169258 | 11718897 ~ 11719113 (+) | True | G194748 |
| TU230779 | lncRNA | downstream | 488864 | 12038503 ~ 12038728 (+) | True | G194828 |
| XM_026915449.2 | mRNA | upstream | 3183 | 11539694 ~ 11541967 (+) | True | hoxb8b |
| XM_034309120.1 | mRNA | upstream | 9026 | 11528894 ~ 11536124 (+) | True | ttll6 |
| XM_034309121.1 | mRNA | upstream | 9026 | 11530788 ~ 11536124 (+) | False | ttll6 |
| XM_026914836.2 | mRNA | upstream | 22435 | 11497318 ~ 11522715 (+) | False | srcap |
| XM_026915193.2 | mRNA | downstream | 138 | 11549777 ~ 11552541 (+) | True | hoxb5b |
| XM_034309122.1 | mRNA | downstream | 3565 | 11553204 ~ 11561935 (+) | False | hoxb6b |
| XM_034309123.1 | mRNA | downstream | 8745 | 11558384 ~ 11561935 (+) | False | hoxb6b |
| XM_026915192.2 | mRNA | downstream | 13292 | 11562931 ~ 11564241 (+) | True | hoxb1b |
| XM_026915434.2 | mRNA | downstream | 21017 | 11570656 ~ 11597077 (+) | True | skap1 |
| trnaq-cug_16 | other | upstream | 258882 | 11286197 ~ 11286268 (+) | True | trnaq-cug_16 |
| trnal-aag_8 | other | upstream | 1480524 | 10064545 ~ 10064626 (+) | True | trnal-aag_8 |
| XR_003402888.1 | other | upstream | 1910083 | 9634877 ~ 9635067 (+) | True | LOC113527805 |
| trnaq-cug_15 | other | upstream | 2031315 | 9513764 ~ 9513835 (+) | True | trnaq-cug_15 |
| trnaq-cug_14 | other | upstream | 2032519 | 9512560 ~ 9512631 (+) | True | trnaq-cug_14 |
| TU231182 | other | downstream | 923044 | 12472683 ~ 12473739 (+) | False | LOC113527673 |
| XR_004579176.1 | other | downstream | 1933662 | 13483301 ~ 13558513 (+) | False | tcf7l2 |
| XR_004579175.1 | other | downstream | 1933662 | 13483301 ~ 13558429 (+) | False | tcf7l2 |
| TU234137 | other | downstream | 5306131 | 16855770 ~ 16863495 (+) | False | anapc16 |
| trnai-uau_6 | other | downstream | 6027644 | 17577283 ~ 17577376 (+) | True | trnai-uau_6 |
