RNA id: XM_026915199.2


Basic Information

Item Value
RNA id XM_026915199.2
length 3776
RNA type mRNA
GC content 0.38
exon number 10
gene id entpd1
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13640177 ~ 13655847 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tacaatgcacacactcacccacacatacacattacttagacacacatacaaatactcCATTCTAAACTAGACATTAGCGAATAGACAGCGAGATAGTGAGCTAGTGAGTAGGGGcttgtgagagagagtgagggaaggGAGGGAGAAAACTGGAGGCAATCCCGCCCACTCTTGCCCTCGCCTTATAAAGGACCTCAAGAATGGGAAAGACCTGCTGAGGAATACAAGCCAACAACTTAGAAAACAGAGGGAGACCCAGaacgggagagagagagggagaacgaagagaggaagtgagaaagGACTTTAAAAAAGGCTGCACGAATGGATGAACAGCAAGAAATGAAAGTCAAGAATCCGTGGCACAGGGCGCAGATCATCTTCGTCGCTACCGTTATTGCAGTGGGAATCATCATAATGGTGGCCATTGCAGTAGTACAACACAAACCTCTACATCAGAAATACAAGTACGGGATAGTCCTTGATGCGGGGTCTTCTCACACATCTGTTTATATCTATGAGTGGCCAGCTGAAAAAGAGAACAACACTGGCATGGTTCAGCAGAAACATGCGTGCAATGTAAAAGGCAAAGGGATCTCCAGTTACTCTGAGACTCCACATAAGGCTGGTGAGTCACTGAAGGAGTGTATGGATGAAGCCAAGGAGACCATACCTAAACAGAGACACCATGAAACTCCTGTATACCTGGGAGCCACAGCAGGCATGAGACTACTCAAGATGGACAATAACAATGCCTCCGAAAAGGTGTTGGAGTTTGTGGAGAAGTCTCTTCAGACTTACCCATTTTCCTATCAGGGAGCTCGTATTATCACTGGTCAAGAAGAAGGAGCTTTTGGCTGGGTCACTGTCAACTACCTGAGTGATAACTTCAGAAAGGCTTCAGGGACTGTGGGAGCTCTTGACCTAGGTGGAGCCTCCACTCAGATCACCTTCGTGTCTGGGCAGCAATTGGAGTCTTCAGACAACTCTATTGATTTCCGGCTCTATGGAAAAGATTATCATCTTTACACTCACagttttctttgttatggaaAGGACCAAGTGCTAAAGCTTTCTTTGGAAAAGCAAATACAACCAAAACGTACTATGACAGATAACATAATTCTGGAGGACCCTTGTTTCCATCCAGGCTATAATGTCACTAAGAGCTTTCAGAGAGTCTTTGATAGCCCCTGTGTCAAAACGGTCAGAAGTTTCGAGAGACAACAGAATCTCATCCATATAGGCATTGGGAATTGGAATAAATGCCAGGAAGCAATCAGGAACGTCTTTAATACTACTTACTGTCCATACTCAAGATGTTCCTTTAATAAAGTCTTCCAGCCCCCCTTGGAAGGAAAATTTGGGGCATTTTCTGCTTACTTCTTCGTGAtgaactttttaaatctgaccaCTAACAGATTAGAAGAGGCTAAAGAAAAACTGGCAACTTACTGCACCACTCCCTGGAACACTttaaagaaaaaacatcctgaAGTGAAGGAGAAGTATCTTGCAGAATATTGCTTCTCAGGTACCTATATCATTACCTTACTGGAAGAGGGATACAACTTCACTTCTGACAACTGGGCAAACATTGAATTCATCAAGAAGATTGGGGAGAGTGAAGTTGGCTGGACACTGGGTTACATGCTGAACCTGACAAACATGATCCCTGCAGAAGCTCCAGACACTCCACTCCTGCCTTATGGGGGCTATGTCACACTCatgttcttcctctctctcctgattATTGTCTTTGTCATACTTGGTTGTATATTCTTCTGCCGACCATCTGGCCCAAACCATAAAGAAATCATTTAGATATCAACAGGCACTGACATTCTACTGTCTGTCCTTATGGAACATATACATCTGAAGAATGAATCCTATGGGACTGAAAACCACTTTTTAAACTCTTTTCAAGAGTTTTAAGCTCTGTGTTTTAATAACAGGTCAGTGCCAGACAATAGAGACTTTATACCTCATTTGAAGGAGACAAAGGCTGAAATCAAGGATTTGAAAACCTGTTGAATTGGGAGACATGATGTGTATTCATGTTTTTGATTTCTAGTTTTTAATGGCTGATTCAAAAAATCTCAGGAGTAAAGATTATAACTGAAATTGCAGAAGGCTGGAGGTTTCttctaaaagaaaatgtgcactgatatatatttatattgtgtgCCTTCAATCCTTATGAAGAACCCATATTAATCCttgcacaaacaaaaatattttattcaaaatgtgATATAACTGCGTGACAGGAAAAAGCAGGTATAGCAGTATAGCCCTCTAGCTACGTTATGGCCatatataatgcaatataatgAGTAGTtatagtattaattaattacgATGTTTCTGCAAGCACACTGTTTCTTTTACTGAAAATAAGACACAGATATGTTTCATTTTTGGGTCTTTTTTTATCCAAATATATAGTGTTTTTATcgtatattaaatataatgatGATAGTTGTTCAAAATGACAGATCGTTTGGTCAAATGGAGGCACATTCATTTAAAAGCACTGTGTACTGTCTAATGTTGTTATTCTTGTGACATGTACACTACAGACCAAAAGTATGGAAGCAAGCAAGTAACAACCAATAAACAACAAACTGCATATTTATTGAGATCTAGTTTAACCAAAGATTCTTCTAATAAAATGGCTTTGGTATGCACTGCTGTACTCTTATTCTAAGGTGTTTGGTGACAATAGTCCCTTATACTCACCAGTTCTTAATAATTTACCAATAATTTGATTCAAATGTAACATGATTCAAGTCATCATTAGTTGTACACTATTTCCACAGACATTtagtcaaattaaaaaaaaaaaaagttagtgttGCTTCCAAACATTTGGCATATAGTGTACATGAAGCATACTGTATACATGTGGCATACTCTGTGTAACAGATATAGATTGgtgataaaatataaagtatgtTAATATGGTGATGGCTCACCACGAACAGCTTCAATGTGCCTTGGCTTAGATGCCTCTGGACGTGTACTGCAGGGATGAACACTATTGAACAATATTACCTCAATCAGTGTTTTGAAGATGGTGGTGGAGAACACAGTCTAACACATCGGTCTgttgactgtgaaggccatagcatatgagtTACATCATTATCATAGTCATCAAGCCATTCAGTGAAccctcatatactgtatatacagtatgtatattaGAAGCAAAGTTGCTTACATTCTTTAGATCTTTATTTTTAGCAATTCAGCATGTCAAAGTAATAAACAGCTGTCATGCCTTACAAAGGTTTACAGTGAGCCACAATTCCACaggaatataataaatacacattgcCACTGTTCTTGAAATACATAATATGAATTATTGATTTGATGATGGGTGTCCATGGGTATGATGTTTATTAGGATTAGATAAAAGCCCTAAAATGCCACTATATAGATAACCAATTTgcgtatatatttttttatgagaGCATTAGTGTGAAGGCTGTGGCAATGCATTGAAATTTAAGATTAGTACTCTGTATATCCATATATGCTTTCTTTCCATAAATTGCCATTATAAGGTAGTGTATTGTATTAGAACATTCTATCTGGGTTAAGAATGAATGGGATATTCATTAAGATCACAATATATTCAGCTGTATTAAACATAACTGTCcaatacaaaacaaatgcagcataaaacattttcatctaGAACTCTGAATTAGATGCTACGTTATGCAGTCTTGTGCTTtgatgcaataaataaaagatgtaGTCAA

Function

GO:

id name namespace
GO:0045471 response to ethanol biological_process
GO:0071405 cellular response to methanol biological_process
GO:0046688 response to copper ion biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01510 ENTPD1_3_8, CD39; apyrase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231960 lncRNA upstream 21238 13618664 ~ 13618939 (+) True G195857
TU231948 lncRNA upstream 122291 13514676 ~ 13517886 (+) True G195847
TU231926 lncRNA upstream 173194 13466765 ~ 13466983 (+) True G195839
XR_003402861.2 lncRNA upstream 573555 13063864 ~ 13066622 (+) True LOC113527319
TU231613 lncRNA upstream 676934 12958940 ~ 12963243 (+) False ablim1b
TU232108 lncRNA downstream 37868 13693715 ~ 13695761 (+) True G195994
TU232344 lncRNA downstream 357726 14013573 ~ 14016247 (+) False tha1
TU232348 lncRNA downstream 367740 14023587 ~ 14043932 (+) True G196202
TU232423 lncRNA downstream 470671 14126518 ~ 14127031 (+) True G196265
TU232451 lncRNA downstream 507724 14163571 ~ 14166015 (+) True G196289
XM_026915185.2 mRNA upstream 23013 13614199 ~ 13617164 (+) True crygmx
XM_026914951.2 mRNA upstream 81092 13483303 ~ 13559085 (+) False tcf7l2
XM_026914976.2 mRNA downstream 80601 13736448 ~ 13758533 (+) True psme4b
XM_034309287.1 mRNA downstream 139246 13795093 ~ 13797650 (+) False mrpl43
XM_026915480.2 mRNA downstream 139247 13795094 ~ 13797650 (+) True mrpl43
XM_026915837.2 mRNA downstream 170260 13826107 ~ 13836370 (+) True mfsd13a
XM_026915381.2 mRNA downstream 181561 13837408 ~ 13848679 (+) True trim8b
XR_004579176.1 other upstream 81664 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 81748 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 1166438 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 2353909 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 3575551 10064545 ~ 10064626 (+) True trnal-aag_8
TU234137 other downstream 3199923 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 3921436 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 4499304 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 4786039 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 5150238 18806085 ~ 18812262 (+) True si:ch211-221j21.3

Expression Profile