RNA id: XM_026915204.2


Basic Information

Item Value
RNA id XM_026915204.2
length 4241
RNA type mRNA
GC content 0.43
exon number 13
gene id tepsin
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14237392 ~ 14246149 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATAGAATAAACGAGTAGCGTAGGTTTGTGGTGTGACAGCGCACGGTGATTCGGTCTAATCCAGTCAGCAATGCTACACAGACACGGGATTAATCCGAGATCATTAACAAATGGCTACATTAATGGAGCGATTGGCTTTCTTGCAAAAAATGCCGACTCTTATGAAGGCGACGGCAGATGACGAAGCGCCCTGTCCTGGATACCTGTTTGAGGAAATCAGCAAAATTTCCCATGAGTCACTGGGCTGCTGCCAGTGTCTTCTTGAATACCTTCTGGAGCGGCTGCAGGTTGAGTCCTGTCATGTGAAACTAAAGGTTTTGAAGATCCTGCTGCATCTCTGTGGCCACAGTCCTCCACACTTTGTCACAGAGCTGAGGCGAAATGCCACGTTCATCCAGGAAGTAACAGTGTACAGTGGCCCTCCAGACTCCGTTCATGGCAATGCGCTCTATCAGAAAGTCCGGGTCTTGGCACAGGAATTGGCCAGTGTGCTCTTCAGTGACATGATGCCCACGGGGTCTGGTATCTCTCCCTGTAAAGCAGCATCTCCAACTACAGgaatGGGCTCTGAGTTTCTCAGATCAGGAATGCTGGGATTTGGAAATAGCCCAGCAAGAAAATCATCCAGTACAGTGGGTATTTTGGATAAGATTCAGAAGGCTGCAGAGGTGGTGGCCAGCGCTGTTCTTCCCCCCACAGAGCACGCTGGTATTCGACTTCATGATAATCACTACCGGGCTGTGGTGGCGCCCTCTGCTGTTGTGGAGGTTGCAGTGCCAGCCTGCGCTTACAGTGTCCCTTCAGGCAACCGCAAAGCTTCTCACAGGTGCCCGGGGCTGGCGAGTGGAGGTTGGGAGGAAACAGGCAGTGGCCACAGCTCCTCTCACAACTCCTCTTTCGAGAACGAGCCGATCGTTCACACATCACTGAGGGGAAGCAGTAAGTCAGGAGACACAGGCAGCCACTCCGGGGCGAGCCGAGAGAGCGGAGACAGCGTATCAGAACGTGTGGAGGCTGTACAGTTGGGAGACTGTGGCCAGGAGATGGCGCTGATCAGCAGACTGACAAATGGATCTAAAATCTTCCTGTCCAGAGATGAGAGTCAACGTTTCATCAAAGAGTGTTCTACTTTAAACTGTGAAGTCGTGGTAGAACTTCTCTGTCACAAACTACAGGACCCCTCACAGACCACCCAAATGAGGGCGCTATGTGGTCTTGCATGCCTAATGTGCACAGATCTGCTATCTTTAGAGCAGATTTTCAGTGTTACACATGTACGCCTCACCCAGTTGAGTAAGGGGACAGCAGGACCTGTAACAAACAAGGCAAGCAAGCTTCTTAGGCAGTTTGAAGCTCTTTTGGGTACTTCGTTGGAAGGAAGCAAGCATGATGCTACTGTGTGTCCTGAATCATCCGCTTCTTCACGTTCAGGTCAGCCCTTAAATCCAACCCTCACTAGTCCTCTTCTCTCAGCACCACTGGATGCTGCTGTAAAGAAACCTCCATCCATAAGTGAATTACAGGCTCCCTCTGCTGGAAAAGAAGACCAGGAGGACGTTTGTACAAATTCTGTAGAGAAGAGCATACAAAAAGAGCAGACTGGTTTTGAAAATGAAGACAGAACCACAGGCCCTTGGGAGAGCTCTGATCCATCTGTAAATCATCCCAGACTGTCACTGTTTAGTGGCATGGAGCTGATAAACAGAGGGAAACCAGTGTGTCTGGTTGAGCCTGTTCCTGTAGAACCAGAAACCCAGACTGGAGCAGAAGCCTTCGAAAACATCGACATGGTTATGGAGAAGAGCTCGGAAAGAACAGCAGAGCCCTCCTCATCCTCTAGTGGTGAACAAGTGTCTGCCTTCTCCTTCCTCAACCTCTGAGCTGGTGTTGGCTCCTACGTTGTTTAGATGACTTTCTGTTGTAGATTTCAATATTTTTGGTAGAATCAATGGTCCTATGAGAAAATATGACTAGAATGGAATAATATGGGTGAAGCCTGCAAAATTTAAGCCTGTACCAGAGGCTTGAAGGTACGAAAATGCCGTTATCAAATCGGCCAGTCCTATACTTGACAAGTAACTATGTATATTTAGGATTAAAAGTGATATCCACTCAAGGgcagattatagattatatggTTACTCAGTtctaaagattaaaaatgttagTATGCTAGGATACATAAGGTTGCCCTCttgagtatgcatacttaaagTCAAGTGTGACACTGGTGTTTACGTAATATTTATATGTGTCCAAATGCTGCTAGTGGCTTATAATCAAGTCTAATGGGGCGTATGTTCATTTCTGGTCTGGGTAGAAGGTTGCTGACAAACTGTGTATAGCAACAGGTGAGCTGCAGGCAGTatagtaggggtgtaacgatacggCGTATAATAACGTAGACTATTTGTCAGAAAATACCGCTTATATCACgtgaggtgtaataaacatttaaacttaatcgAGCAGACACTACCTCACTCTAAAAAAGAAGCTTCCTCTTGATCCTGAATCAGGAGAGTCTACAGGggttcaaaaaaaaacacacctctcTTAAGGAAGCTGTTTTTCACAAGCTAATACACTAGAATCCTAAGCTTTACCGACTGACTCAATCTGAGCTGAAGAAATCACTGCAATGATTGGGAAGTTAATAGCCGCAGGTATGAGACTCTACTCGGTATAGGAGGATTCAGAAACACGTTTGAGATACAGAGAGCAATGACTCTGACAGCACAGcagaatttgaaataaaaaaaacaaaactctgtGCTTCAGACAGGGCTTGTCTGTGCCCTTGAGTCACTTCTCTTGAGTCACTTCTCTGagtgttaatgtttaattaggtgtgcttaattttgttacattctaatgcacagcttttgtttaattatatggTTCAAACAAATTGTCATTATTAAGTTTTTATACCTTTACAGTGTTGAAATTTTGAATCAGttgaaaatggaaatgtaaGGCACATAATCCGGCAATGCTGGTTTTTGCAGtgctgaaaatgtaatttatcaAGACACCACTGTATTGAATCAGAATTCTGCATATCGTTACATCCCTACTAAACATTTAGTAGGTTTACCTGAGAAAATGGCCAAACAGTGTCAGTATTCTATATAAGTTGTTCAGCGGCcccaggttcgatcctgagctcaggttactgtgtggagtttcacatgttctcagCGTGTCTGTGTAGATTTACTCCaggttctctgttttcctcccacctccgaAAAACATGCCGTTAGGTGGTTTGGCTAAAGAATTGCCCCTGGGTGTGactcagtgtgtgaatgtgtgtgtgcatggtggtcCAGGGTGTATCCCTGCTCCCGGTGATCCCGGGATAGGCActggatccactgcgaccctgaccaggataagcagttactgaaagagagtgagtgaatccTCAGAGACCAGACATTTATCACAGTTCTCACCATCTGCTCTCAGTATATCAATCATAACAAATTGTACATTCAGTTAAGTACTTGAGTGTTTTGCTGATGAGAGAAAACCGATAGGAGACGTACCTCAGGATTCATTTCCTCCAGTGTTTACCTTGCCTGACACATAGTGTGTctctttacaaataatttaatgatacttttgttttgcactATGGAGTTATTGCTCAAAGCTACTTAAGTCTTCCAAttatttaaaacctttaaaaatgatcacaaaACACAAGTATTAACATGCAAAATCATTTCAGTATATGTCCTTTTCACCGATAATTAGATGGATGAAATCAGCTACATGTGGTTTTGCAAACTGtgctgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgagatgtggaTCTGCAATTAGACATGTGTCAAATACACTGTATTAATCATATCTTTAATTATACATAGACACcaacacaataaaattatttaaaaacttttattgtTGATATTGTACGAAGATCATTTGAGAAAATAACcatttataaattgtaaatgtgttagCTATGTTATGTACAATTCTACATACAAAACATGAAGGTCATTGTAATGATTATCATCAAAACTGATAGTCTTACACTGTAGCTCTCAACCTTTTTGAGCTGCAACCCTCtcaaaaacaattcaaaaacaTAGGCTGGGGTTCGTGCACCTCCCTCTGAATGTGTTTCCCCTGAGACACATTACAAGCAACACACATTTCTTCACATTTGAGTATTGTAGTCTATTTCTGTTTTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232456 lncRNA upstream 45479 14190839 ~ 14191913 (+) True G196294
TU232453 lncRNA upstream 63619 14173290 ~ 14173773 (+) True G196291
TU232454 lncRNA upstream 67580 14169308 ~ 14169812 (+) True G196292
TU232451 lncRNA upstream 71377 14163571 ~ 14166015 (+) True G196289
TU232423 lncRNA upstream 110361 14126518 ~ 14127031 (+) True G196265
TU232472 lncRNA downstream 18027 14264176 ~ 14264386 (+) True G196307
XR_004579315.1 lncRNA downstream 34085 14280234 ~ 14287826 (+) True LOC117598693
TU232442 lncRNA downstream 41210 14287359 ~ 14324281 (+) True qki2
TU232479 lncRNA downstream 80953 14327102 ~ 14327360 (+) True G196312
TU232482 lncRNA downstream 91814 14337963 ~ 14338270 (+) True G196315
XM_026915931.2 mRNA upstream 4105 14208899 ~ 14233287 (+) True slc38a10
XM_034309653.1 mRNA upstream 203249 14013612 ~ 14034143 (+) False tha1
XM_026914595.2 mRNA upstream 203249 14022576 ~ 14034143 (+) True tha1
XM_026915894.2 mRNA upstream 241223 13992223 ~ 13996169 (+) True socs3b
XM_026915313.2 mRNA upstream 262799 13951793 ~ 13974593 (+) False LOC113527468
XM_026915135.2 mRNA downstream 4316 14250465 ~ 14253655 (+) True si:dkey-21c1.4
XM_034309504.1 mRNA downstream 4316 14250465 ~ 14253655 (+) False si:dkey-21c1.4
XM_034309505.1 mRNA downstream 4316 14250465 ~ 14253655 (+) False si:dkey-21c1.4
XM_026915426.2 mRNA downstream 19197 14265346 ~ 14266594 (+) True tbcc
XM_026915700.2 mRNA downstream 22527 14268676 ~ 14271524 (+) True prph2a
XR_004579176.1 other upstream 678879 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 678963 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 1763653 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 2951124 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 4172766 10064545 ~ 10064626 (+) True trnal-aag_8
TU234137 other downstream 2609621 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 3331134 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 3909002 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 4195737 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 4559936 18806085 ~ 18812262 (+) True si:ch211-221j21.3

Expression Profile