RNA id: XM_026915210.2


Basic Information

Item Value
RNA id XM_026915210.2
length 3143
RNA type mRNA
GC content 0.42
exon number 22
gene id acsl5
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13341575 ~ 13350475 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCACATGCTTTCTTCTTCCTGTGTTTCTTGTTGCTTATGGAAGAGGCTCTTTCTGTCGGATTTAGTTTCTAGCGTCACTACCTGAGCAACGTTGCAGACTCCTGCAGGACATACAGGTCTGACAGAATGGAGTTCTTATTTGAGTTTCTATTCTCTCCACTGCCTACCTCAGGACTGGTGTTCTTGTTTGGGCTCGCTGCAGTCGCCCTGACTTATCTCAACACCAGGCCCAAGCCCCTACGGCCACCTGTCGATCTGAACAGGCAGACTGTGGGCATTGCGGGTGGAGCCAGGAAGTATGCAGTTCTAAAAGATGACAATTTAATATCCTATTTACATGAGGATGCCAAGACGCTATATGAGGTTTTCCAAAGGGGATTACATGCCTCAGGAAATGGGCCTTGCCTGGGGTACAGAAAGCCTGGGAAGCCATACCAATGGCTGAAATACAAACAGGTTTCGGATAGGGCTGAGTACTTGGGCTCTGGACTGCTCCACAAAGGACTGGAGCCCTCACCAAAATCATTCATTGGCATCTTTGCTCAAAACCGGCCTGAGTGGATTATCTCTGAACTGGCCTGCTATACTTATTCCATGGTGGCAGTTCCTCTGTATGACACGCTGGGTCCTGAGGCACTTATCTTCATCATTAACAGAGCCAACATATCTACAGTACTTTGTGACAAGCAGGACAAAGTGGAGACTCTTCTCGCTAATTGTGAAAAAGGTCACCCTGTGCTCAAATCTATCATTGTTATGGACCCATTTGATGCTGCTGTGACAGAACGAGCATCTAAGTGTGCAGTGGAAGTCTTGAGTCTGAAGGATATGGAGGCTCTGGGGAAAGATAATCTTCGAAAGCCAATTCCACCAAAGCCAGAAGACTTGAGTATTGTGTGCTTTACCAGTGGAACTACTGGTGATCCAAAGGGAGCCATGTTAACCCATGAAAATGTTGTGGCAGATGCTGCTAGCTTTGTTAAAAGCTTTGAGAGTGCCTTCACACCACTTTCCAGTGATGTGTTGATCTCGTTCCTGCCATTGGCTCACATGTTTGAGAGAGTTGTGCAGACAGTGCTGTATGGTGTTGGCGGAAGGGTAGGTTTCTTCCAAGGAGACATCAGACTGCTTCCTGATGACATGAAAACCCTGAAGCCCACAGTTTTCCCAGTCGTCCCACGTCTTCTCAATCGTGTATATGACAAGATTCAAAGTGGGGCCCAGACTCCATTCAAGAAATGGCTCCTGAACTTTGCCATTGCAAGGAAACATGCAGAGGTGAAGCAGGGCATCATCAGAAACAACAGCATATGGGACAAGCTCATCTTCCACAAAGCACAGGAATCTCTTGGGGGATCTGTGCGGGTGATGGTGACAGGTGCTGCTCCCATTTCACCTGCTGTGCTCAGCTTCCTCAGAGCATGCCTTGGTTGCCAGATATTCGAGGCATATGGCCAAACCGAGTGCACAGCTGGCTGCACCATCTCCCTGCCTGGGGATTGGACTACTGGACATGTTGGAGTACCTGTTCCATGTAATGTGGTCAAACTAGTAGATGTCGAGGAGATGAACTATTTCGCATCTAATGATGAAGGAGAGGTTTGTATTAAAGGGAAGAACGTGTTCTGTGGATATTTGAATGATCCAGAGAGGACAGCTGAGGCCCTCGACCAAGATGGATGGCTACATACTGGAGACATTGGCAAATGGCTTCCGACTGGAGTTTTGAAGATCATTGACAGAAAGAAGAACATCTTCAAACTGGCTCAAGGAGAGTACATTGCTCCTGAAAAGATCGAGAATGTTTACATTCGATGTGGTTCAGTTGCTCAAGTATTTGTTCATGGGGACAGTTTGCAGTCCTGCTTAGTGGCCGTTGTGGTGCCGGATGCTGAGACACTACCTGGTTTGGCTGAGAAGCTTGAAGTTAAGGGTTCATTGGCAGAACTATGTAAAAACCAGCAAATTAAGAAGGCTATCCTCTCTGACCTTGTAAAGCTGGGACGTGAAGCAGGGCTCAAATCCTTTGAACaaGTGAAAGACCTGCATCTCCACCCTGAGCCGTTCACTATAGAGAATGGCCTTCTTACTCCAACACTTAAGGCAAAAAGAGGTGACCTCAGCAAGTTCTTCAAACATGAGATTGAAAGTCTTTACGCCAACCTGCAGTGACGCATCAACAAAGGCTATATGGATTAAGTTCCTGTGACCTACGGACTAACTCAGAGAGCCAAAGGAATGTACACCATAAAGCTTAGATGAGGAGCACAAGGTATAGAGATACAGTATTAGGTTTATAGAAGTGCTGAGTCAGCTTGACTGTGTCCTTTAAGCCTTGTTTTATGCTCGAATGTACATATTAATGGAATActccattttcatttcattccctATCCCTAGAATAGAACTGAATAGCAGTTGATCGAAGGCTAGCTGTAATGGGAGTCTAAAGGCAGCTACTGAATTTtgtcaataaacaaaaaatacatttatttaaaaatgcgTTTATATAACGCAAATACAAAAGCCTGTCACAGTCTAACAGTCTAAGAGTCTAAGACATAAGAATATCTGAAAAAAGTTGTTCCATAGTTTTATCCAGctttccaacactggagcaatacagtaaaaaatagTAGTTTTTATTCTTGGGAACACATGATCACAAATTCCTCTTGGAAAAAGGGTGATTATTACAGTTTTAGAGTTTAATTTACaaattgtttttcactgaagaaTTCATGAGTTATTAAACATGCTTTCATACAGAAATTCTCTCACTGCCCCAACGAGTGCCCTTAGACTTTTATTataagtgtgttttattcaaacattttttgtttttttcagtacaaGGAAATGTTTTTCAATTGTTGTTTATATTTCACTACAGTTGCAATAGACAAAGATTAGGCTGGAAAATGCTGAATCCTTTCATTTAATGCTATGTACATTTGAAAATATTAAGCACTGAAAAGAGGAATTACCGAATAAATTATTTccattgttttatatatacatatatttaaaaaaacataaacaagatGAAATTATACAGAGCAGAAATGTTTACTTCTCTATTGTGAGGTTCACGtcagttttacaaaaataatcaaaaataaaatcaaaattttttttctgta

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01897 ACSL, fadD; long-chain acyl-CoA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402861.2 lncRNA upstream 274953 13063864 ~ 13066622 (+) True LOC113527319
TU231613 lncRNA upstream 378332 12958940 ~ 12963243 (+) False ablim1b
TU231526 lncRNA upstream 497014 12844325 ~ 12844561 (+) True G195512
TU231306 lncRNA upstream 683252 12658105 ~ 12658323 (+) True G195301
TU231292 lncRNA upstream 698049 12643268 ~ 12643526 (+) True G195287
TU231926 lncRNA downstream 116290 13466765 ~ 13466983 (+) True G195839
TU231948 lncRNA downstream 164201 13514676 ~ 13517886 (+) True G195847
TU231960 lncRNA downstream 268189 13618664 ~ 13618939 (+) True G195857
TU232108 lncRNA downstream 343240 13693715 ~ 13695761 (+) True G195994
TU232344 lncRNA downstream 663098 14013573 ~ 14016247 (+) False tha1
XM_034309093.1 mRNA upstream 10505 13327700 ~ 13331070 (+) True tectb
XM_026915214.2 mRNA upstream 11167 13327700 ~ 13330408 (+) False tectb
XM_026915025.2 mRNA upstream 122159 13204326 ~ 13219416 (+) True nrap
XM_026915034.2 mRNA upstream 146445 13193024 ~ 13195130 (+) True si:ch211-28p3.4
XM_026915026.2 mRNA upstream 163653 13167086 ~ 13177922 (+) True LOC113527338
XM_026915485.2 mRNA downstream 5377 13355852 ~ 13462044 (+) True vti1a
XM_026915482.2 mRNA downstream 5377 13355852 ~ 13462044 (+) False vti1a
XM_026915486.2 mRNA downstream 5377 13355852 ~ 13462044 (+) False vti1a
XM_026915483.2 mRNA downstream 5377 13355852 ~ 13462044 (+) False vti1a
XM_034309317.1 mRNA downstream 132826 13483301 ~ 13558505 (+) True tcf7l2
TU231182 other upstream 867836 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 2055307 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 3276949 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 3706508 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 3827740 9513764 ~ 9513835 (+) True trnaq-cug_15
XR_004579176.1 other downstream 132826 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 132826 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 3505295 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 4226808 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 4804676 18155151 ~ 18158629 (+) False pde6gb

Expression Profile