RNA id: XM_034309212.1


Basic Information

Item Value
RNA id XM_034309212.1
length 1665
RNA type mRNA
GC content 0.47
exon number 7
gene id rnls
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10135916 ~ 10166915 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTATTTTGGGAAGTACCATTATAACATATGATCAAATTcagattatgtttattttaagtaAACAGAATTAGTAATATACGACTTTCTAGTGTTTTGGGTGATTTTCTAAACGCTCTGCTGTCAACCAGGGGAGAGTTTTAGTTGGCCAACAGCATGGGTCTGAAGAGACAGGGCgtgtttgtagtgtttgtaTACAGTAAGTGACACTTGACGGTTTAGTAAGCAGCAGTAAGCTTACTATTATCAGTGGAATTACTGCTTTTCTTCCTCAGTATGTCTCGGGTGCTTATAGTCGGAGCTGGACTGACAGGCGGTGTGTGTGCGAGTTTACTGCACCGGGAAATGGCAAACCGGGTTCAGATAGTGGTGTGGGACAAGGCGAGGGGAGCAGggGGAAGAATGTCTACAAGCAGAAGTCCAAGCAATCCGTTGTGCACAGCGGACCTCGGTGCTCAGTACATCACTGCCACACCATATTATTccaaaattcacaaaagATTTTATCAAGAACTCCTAAAGCATGGTATTTTCAAACCACTTGAGGCCACAGTGGAGGGCATGGCGACAATGGAGGAAGGCACTGTAAACTATGTGACCCCATCTGGGACATCATCCATTGTTAAACACTATCTCAAAGAGTCAGGAGCAGAGGTGCTCTTCGGTCATCAAATCACCCACGTTTACCGCAGAGGGCCATGCTGGGAGGTGCACCGGAAAGAGGGTTCACCAGAGCAGTTTGATGTGGTGGTTTTAACTATGCCCATCCCACAGATACTACAATTACAAGGAGACATTGGCTCTTTgctgagtgagagtgagaggcAGAAACTAGAGGATGTCAGCTATTCCTCTCGCTACGCCTTGGGGCTTTTCTACAAAGCCGGCGTGCAGATCAGCGTCCCCTGGGTGGCCAAGTATGTCTCCAATAATCCCTGCATTCGCTACATCGCTACAGATGATAAAAAGCACAATTTAGAGATTGGCCCCTCTGTGGTGGTGCACACCAGCGTGCCTTTTGGCATGGAGCACTTGGAGGAGGCAATAGAGGATGTTCAGGCCATAATCCTGCAAGAGCTGCAGAAGGTGATGCCAGGCCTTCCTGAACCTGAGACCATCAAGTGCCAGAAATGGAGATACTCTCAGGTGACAAGATCAGTGGCTGGCTGCCCGGGGCAGATGACACTGCTCGCCAAGCCTCTGCTGGTGTGCGGGGGCGACGGCTTCACACACTCCAATTTCGACGGCTGCGTCGAGTCAGCCCTGAAGCTCTTCGAGGTTCTGAAGTCCTCTCTCTAAAGCGGGCATTGGGAGGGAATGCTGTATTTTTGGGGGCCGGGGAACTGGAACGGGTTTACCAGTGATGATTCAGACGCAGCACCTCCTACGCATGTACTGTATGAAGAACAGTGATACTGTTGGGCAGAAAAACCAATTACGTTGTTGCCTGAGATTCAGAGAATTAGAAGAAAACTGAATAAACTGTGAAGTATTGGTAGCAAAAATACTCCttatattgattttatataatGGTAATGTTGGGCACAAACAGGCCTTCACACATTTTCTAAcatgtaaactgtaaatgttgaaTGATCTTGTCTTCCTGTTGCCGTTTGTGGGTTTGAGATgtaagaaaacaataaaaaaaatccttaacaCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229298 lncRNA upstream 309053 9825427 ~ 9826864 (+) True G193646
TU229297 lncRNA upstream 311449 9824047 ~ 9824468 (+) True G193645
TU229153 lncRNA upstream 354962 9694909 ~ 9780955 (+) True G193544
TU229145 lncRNA upstream 470401 9663930 ~ 9665516 (+) False arhgap23b
TU229133 lncRNA upstream 482657 9652172 ~ 9653260 (+) True G193542
TU229556 lncRNA downstream 57787 10224702 ~ 10226319 (+) True G193842
TU229539 lncRNA downstream 158041 10324956 ~ 10329985 (+) False G193828
TU229536 lncRNA downstream 158725 10325640 ~ 10336247 (+) True G193828
TU229537 lncRNA downstream 165991 10332906 ~ 10336247 (+) False G193828
TU229541 lncRNA downstream 165991 10332906 ~ 10336247 (+) False G193828
XM_026915532.2 mRNA upstream 11075 10118888 ~ 10124842 (+) True ankrd22
XM_026915533.2 mRNA upstream 11075 10119187 ~ 10124842 (+) False ankrd22
XM_026915769.2 mRNA upstream 34129 10097369 ~ 10101788 (+) True acta2
XM_026914636.2 mRNA upstream 57802 10077017 ~ 10078115 (+) True ch25h
XM_026915283.2 mRNA upstream 73678 10054015 ~ 10062239 (+) True slc16a12b
XM_026914999.2 mRNA downstream 35074 10201989 ~ 10214955 (+) True atad1b
XM_026915000.2 mRNA downstream 35074 10201989 ~ 10214955 (+) False atad1b
XM_026914923.2 mRNA downstream 72855 10239770 ~ 10254637 (+) True cyth3a
XM_026915377.2 mRNA downstream 113771 10280686 ~ 10290416 (+) True pms2
XM_026915721.2 mRNA downstream 123542 10290457 ~ 10296523 (+) True rsph10b
trnal-aag_8 other upstream 71291 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 500850 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 622082 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 623286 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 623677 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 1119282 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 2305768 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 3316386 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 3316386 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 6688855 16855770 ~ 16863495 (+) False anapc16

Expression Profile