Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026915218.2 |
| length | 1261 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 6 |
| gene id | pigf |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 17480223 ~ 17487726 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006506 | GPI anchor biosynthetic process | biological_process |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004307 | ethanolaminephosphotransferase activity | molecular_function |
| id | description |
|---|---|
| K05287 | PIGF; GPI ethanolamine phosphate transferase 2/3 subunit F |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU234511 | lncRNA | upstream | 29573 | 17450357 ~ 17450650 (+) | True | G198050 |
| TU234513 | lncRNA | upstream | 39861 | 17440148 ~ 17440362 (+) | True | G198052 |
| TU234512 | lncRNA | upstream | 43271 | 17431173 ~ 17436952 (+) | True | G198051 |
| TU234503 | lncRNA | upstream | 64354 | 17411454 ~ 17415869 (+) | False | G198044 |
| TU234553 | lncRNA | downstream | 50823 | 17538549 ~ 17540320 (+) | True | G198075 |
| TU234556 | lncRNA | downstream | 54130 | 17541856 ~ 17542072 (+) | True | G198078 |
| TU234561 | lncRNA | downstream | 76873 | 17564599 ~ 17565031 (+) | True | G198083 |
| TU234562 | lncRNA | downstream | 80652 | 17568378 ~ 17569162 (+) | True | G198084 |
| TU234560 | lncRNA | downstream | 82938 | 17570664 ~ 17572005 (+) | False | mta3 |
| XM_026915604.2 | mRNA | upstream | 6398 | 17468136 ~ 17473825 (+) | True | gch2 |
| XM_026914880.2 | mRNA | upstream | 153253 | 17316264 ~ 17326970 (+) | True | fshr |
| XM_026915957.2 | mRNA | upstream | 205662 | 17125185 ~ 17274561 (+) | False | nrxn1a |
| XM_026915018.2 | mRNA | downstream | 58067 | 17545793 ~ 17572065 (+) | True | mta3 |
| XM_026915019.2 | mRNA | downstream | 58067 | 17545793 ~ 17572065 (+) | False | mta3 |
| XM_026915020.2 | mRNA | downstream | 58067 | 17545793 ~ 17570916 (+) | False | mta3 |
| XM_026914980.2 | mRNA | downstream | 155294 | 17643020 ~ 17669237 (+) | True | ppm1bb |
| XM_026914979.2 | mRNA | downstream | 155294 | 17643020 ~ 17665378 (+) | False | ppm1bb |
| TU234137 | other | upstream | 616728 | 16855770 ~ 16863495 (+) | False | anapc16 |
| XR_004579176.1 | other | upstream | 3921710 | 13483301 ~ 13558513 (+) | False | tcf7l2 |
| XR_004579175.1 | other | upstream | 3921794 | 13483301 ~ 13558429 (+) | False | tcf7l2 |
| TU231182 | other | upstream | 5006484 | 12472683 ~ 12473739 (+) | False | LOC113527673 |
| trnaq-cug_16 | other | upstream | 6193955 | 11286197 ~ 11286268 (+) | True | trnaq-cug_16 |
| trnai-uau_6 | other | downstream | 89557 | 17577283 ~ 17577376 (+) | True | trnai-uau_6 |
| TU234778 | other | downstream | 667425 | 18155151 ~ 18158629 (+) | False | pde6gb |
| TU235296 | other | downstream | 954160 | 18441886 ~ 18510159 (+) | True | G198737 |
| XR_004579138.1 | other | downstream | 1318359 | 18806085 ~ 18812262 (+) | True | si:ch211-221j21.3 |
| TU235479 | other | downstream | 1318397 | 18806123 ~ 18811512 (+) | False | si:ch211-221j21.3 |
