RNA id: XM_026915238.2


Basic Information

Item Value
RNA id XM_026915238.2
length 6252
RNA type mRNA
GC content 0.42
exon number 5
gene id lzts2b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 20979187 ~ 21008385 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacaaacacacactgctgctcaaATCCCAGAAACATCTGTCTGCTAAAGAGAGACTGGAAAACCTGTGCTGAGGAAACTGAGTGAAAactagagagaaagaaagactgagaaagaggaaaaaaaggaaggatGAGGCCGCCATTCACAGCTGGGCTGCGCTATATAGAACACGTGTGGCGGAGAAATAGCATTTCctgagggaggagagaggatggagagagcggtgagagagaaagagagcaacgagaaggaggaagggagagaggaaAGTGTGTGAAGCTGGCCCTGGTAGTCAAAGATGGAAGTGTGTTCTGTGTGGCGGATTAGACGAAAGAGCTAAAGAGACGTTTTACCTTCAGTTAGCAACGGAAGCAGCTATGCAGGAATCAACCAGGGATTGTGTGCGTGCAGTAAGCCACAGGCATGGCATTGGTCCAGTCCCTTCCAGTGACTACTGACCACCAACCAGGTCCGGAGAGCCGTAGACAACGTTCCTCTCCTGTTTCACCACCCTCTCTAGGGAGCATGGGCTCTGTAAGCAGTATGATCCCCAGCCACACCGCATACCATGGCCGGAACAAACTAGAGGTCACGGCTCAGCTCCGTCGGGGCTCAGAGCGACTCCTCTCTGATTCCTCTCATGAAGGAATTTTTGTAAGTCAAACACCGTCAAGCAAGAGGAAGGCCATTGCAGCTCGAGGGAAAGGAATTGGTGGGCGATCATATTCACATGAAGATTTGATCACTGACTGGAATGATAACTGGCTGGATTCAGGCCAGAGTGGAGGGGAGATGGGTGTGGATGGGCCTCCTAAACTGGTACCTGTTTCTGGGCAGTTAGAGAGGAATGTACAGCAAGCCATCATCCGACCAACAGCTTTCAAGCCTGTGGTGCCAAAGAGCAGAAATGCTATGCAGTATCTCTCTCCACGGCTAGGGGGAGGCTTATCAGGGAGCCAGGGCAATATCAGTGTACTCTCTCCAGAACAAGACACTGTCAGCCCAGTAACCACAGAACGACGCAGCTCCTACAGTGGAGCTCGAAATGGCTTGTTTAGTCAGTCCTTCACTATGACAGACTCGGGACGGAACTCATTAACCAACCTGAATGCATACAATGGCCCTGTTTATAGTTTAAACCAAACAGAAGCTAGCAAGCCTGTGCTTAGCCATGGACACTCCAATTCGGACAGTGGACGTTCATCTTCTAGCAAAAGCACAGGGTCTCTTGGGAGTCGCAGTCAACCAGGTATATCAGACATGGGATCAGGTGGACCCTCTCCTCCACCAATAGAGGCTTATGAGGCCATTGTGAGAGACTTGGAAGAAAAATTAagggagagagagctggagctgCAGCACCTGAGAGAAAACCTAGATGAGAATGAGGTGGCTATTTGTCAGGTGTATGAAGAGAAGCAGAAACGGAGTGAGCTAGAGATGGAAGAACTGCGACAGAGCTGTGCCACTAAAATGCAGAAGGCATCGCAGAAGGCCCAACGGGCGCAGCAGCTCCTTCAATTCCAGATCTTCCAGCTTCAGCAGGAGAAAAAGAAGCTGCATGATGACTTGACGCAAGTCCTGAAGGAACGTGAGCGGCTTGAGGAACGCTGTGCCTCCTTTGAACGGGAACACACACAATTAGGACCCAGACTGGAGGAGACTAAATGGGAGGTGTGTCAGAAGACAGGAGAGATCTCTTTGCTAAAACAGCAGCTGAAGGACTTGCAGGCAGACCTGTCTCAGCGAGTGGGAGAGGTGGTGACACTACGAGGGCAGCTGAGGGAGGCACGGGCTGAGCTTCAGAATAGCCAGAGCCAACTGCaggaggcacacacacacacacgcactcgtGCCCTTGAGCTGGAGGTGTGCGAGAACGAGCTGCAGCGGCGCAAAAGCGAGAACGAGCTGCTGCGAGAGAAAATGAGCCGTTTGGAGGAGGAGTTAATGCGGCTCCGCCAGGCTTTGAACGAATATGCTGAGGCTCCAGCCCTCATGCAGGAATCAAGCTACAGAGGAGGAGCAGGCGGTGGTACAAGTATTGAGGAGCAAAGGCTGGCAAGTGATAGTGaggaggtcaaaggtcagcgtGAGAGTTCCAGGCAGCAGGTTGAGAGGCTGAAAGGTGAGCTGGCTCGCCAGAGGCAGCTGGTCGAGGATCAGGCGACGGCGTTTGAGAATGAGCGCCACTGCTGGGAAGAAGAGAAGGACAAAGTGATTCGTTATCAGAAGCAGCTGCAGCAGAACTATGTTCAGATGTACCGGCGCAACCGTGAGCTCGAGGCGGCCCTACGCGAGCTTAGCCTTGAGTTGGAGAAACGAGAGCAGGATGACGAGAGCAGCGGCAATGAGGTCACCTTTGACGATGTTGCTGCAACAGAGATATAACACTCTACAGGCCAAATTCAACTCAAGTTGCTTATTCACAGTTGCATATTTAATTGATGTCCTGTTGACCCAGGCCATCCCTTTTAATTTCATAGCAATATCCAAATACAGCTTTTTTGCTCACTGATTGAAACACACCTACATGGGATTCACTTGAATTCACTCGCACTAAAACGTGAAGCAGCAATCTATCAATAAACTCAAAAGAAGAGTTGGAAGAAGATCCgtgattgtgttatttttttcttacctgTATTCTGACAAATCCCATCTTCTGCACCAGGATTGGCTAGTAGTCCTTGTGTCCAAGGAGTTCACTGACTGGACAGTTGAAATGCCAGATTGTAGAAATTGCAGATATAGCCAAGAAAAGAGATTTCTCAGAATATTGGTGGGGAAGAGGTAATGCTTCTTCATTGCTTCTCAAGGtctgttttgctttcatttctatagtgaaGTCATTTCTATAAATGACTTCCTGACTGTCCAATTAGTGGAAAATTTGCAGTCCAACTAAATTAGGTAAgccctttatcctggtcagggtcatggtggagctGGAaccaatcccaggaacactgggcacaaggcaagaatacatcctggatgtgACACCAGTTCATCACATGGCAGACTGCACAAACACATTTGGCAAATTACTTTACAAGGTCACCCTTTGCTTATTCTAAAATATTAGCAATAGAAATTATTAGCAATATAAGCAATATTTATGGACACAGATTTCCCAAAGCCCTTCCCATATCTGTGGATCCACCTGAATTAAATGACAATGACTAAAATCATCTTTTGGTTACATATGTACAAACATTTTAACCCTTTTAATTCAACCTAATCCCCTGTCAGAGTGACCTGTGAATCATCTCTTTAatctataaatattattttttattatttttatttcatattaattagAGTAGCAAACATTAAACTAGGTTATTTTGACCCAAAAGGAACATAAAGGTTAAAAAACAACCTGCTCTTCCAGTGCTACACTAACATTTCATACTGAACATAAGTTCACATATACAGGACCCTGAAGAGGTCATtaaaagtttgtgttttatatatttaggtCATGAATAGGTCACATTTATTGTGACTACATAATGTAGGCTAAGTCAGATCAACTGTCTTGAGTTGCTCTTTATACAGTACATCGCAAAAAGTGTAAAGTTCAAGTTTATATgcctcatatttatacattcTATCTGCTTTCACATCGAATGCATCATGAGACTAGTTGTTGTAATCGCCACATCTGTTTGTCGCATTTAATGCAATCAtgctcatatacagtatgtaggcTGTGAAACTAAAAGTTATGCTGATTAAATACCTAATCATGGAATGGTGTCTCAGGAGACATCACTTCAGCAATGCACAACTGCTTTGTCTGACCTTTGAATGTTTTATAGTTAATTCAAGAGTCACTTAAGTGCACTTTGTGTGTGAAAAGGTTGTAGCGAAGAGGTtgtgtggtgtgagtgtttATCCCACCTCATCATACATCGGCGGAGAAGATCTCCACCTCATGAtgaagtagcaaaaaaaaaagctcagtgcTCCCAGACCAAAAGACATGTACCTAGATGTGTGTTTGCACATGTATACAGTTAAGAAAAAGAGGTTCACAAGGGTACTTTGGAGAATTGAGGATTCTTTGATACCTAAATGGATTCAGCTGGCTCTGTTGTGGAAGTAGTCTGTTGtatggttctacatagaacattTAAGCGTTTCGTCAGAGGGACAAGCTGAAAAACTACTtaacaggggtggacaaatcagtaacCTGGGTGCctaggacaagcagatttcatgtccgggctattagttttttaaGTCGTAGTCACCTGGTGgacaaatagaaaaagaaaaaagcttacTCTTGATTGACTTTGACAAAAAAGAAGTTTTTATTTGCTGGACAAAGCCAtcatataactctcctgctagcACAGCACGCAGTTACCTCATATTGTAGATATCTAGAGAAAATAGACACTAATCTGACTCCAATAGTGTGAGAGGACAGAACATTATATCTCATATATGAAACACTGGCCAATGACTTACTGACTTTTTGTTGAGGCCACAAGCTTCATGTGCTACACGATCATCTACTTTATTCATTTCACTTAGTCATTATCAATGAACTTAATGCTAGCGACTACTTTTTAACCTAGTCAATTAGGGATCCAGACAACAGTAACATGGTACTGGGCAGCATATTAGAGATTTTACTTACCTGTTGGGCTGGGTAATGAATTCATGATTCGTCCACCCCTGTTTTAGGATTCTAGATAGAaactttttctaagagtgtagtgAAACAAAAGTCTCAGTCCACTACCAAAAATTACCCTTACTGACTCTCCAGTGAAGGTTATTTCTTCAAGTAGGACTTGACTCAAATGTTCCTGGATCAACAGCCCATAGATAAAAATTCCCCCCAAAACACTGATCATGAAGTTGTTATGAggtgtttaattaaataaaaatttagcaAAAGTCTCAATCTATTTGAAAACGCTGAAGCTACACTCCACCATTGAAATGAGGACTTTGTATCATTATCCACTAATGCATACTAGCACAGATAAATatggtaaatattttaatagtttgAATGAACAGTGTTACCTATGACCTGAAATGAAAAACTACCCAGTAGCTTTTGGCATCTGGCTCAGGCGTGGCAGGAGTAAAAGGCAAAAACTGGTGACATTTCATGACAGTAATTGGTTGAAATGACTTCATTCAGGAACATGACTCACTAAAAGAAAGAATCTCAGCCACAATacagttctagcattttaaaatctggttactcTCAAACGtgaaaaagggagaaaactgtATTGAAAGATTCCTGTCCGACTATGGCACAGGAGCATCTCAGACATTTTGGcagccagtatctgattatAAACTAAACTGATTCGTCTTATGTCCATTTTACTACGGCACATAAATAGACAACAACTTGATAAAAGCGTGACATTCACTGTGGGAAGAAATCacatttagctagcaaggttttaggtAGCCTAGGCAGggttaaattacaaataaaaacagtacCATGATGAGATATATTGGtgagatatatttatatcacaaaggtgaggtgtcaaagtatgttatagaaaaaaaaataataataaaataacaacaataataaatttgGCCAAAACGTGATTTTTTGGCTTTTTGGCTGTTCAACCATTGAATTATTTCTAGGCCATCACACACAAAGGGTTTGGTGAGTGTAGGGTTTGGTTATGATCAAGGAAGATAAAACTTAATTAATTGATAGACATTTATGTGGACTTATTTTAATCATAGATGGAGTAGATATAatgaattcaaataaatatgaattagtACTTGTGTATGTACTAATGCCGACATTCATAGTTTGTTAGTGTTAACTAATGccataaataatgttagttatgGAAAccttaatgttaattaaactaAAAGTTTTTGCTAGTGGACTTAGACTTTTGAACTCTATCGTACATGTAATATTTGGCATCTAAAcataatgaaatatataaagtgaaaataaatgtgtattttatcaCAAATTCCCCCAAAGAGGCCATTTTATATACTGTGAAACACAAGTGTGTTCTGCCAAAACttattatataagtatatataatatataagtatatatatatatttacaaaatttccTTGCCATGGGAAAATCTTTTAATTACTATAAATATCTCCTAAGGTATGTAAAGTTAaggtataaaaagaaaaaaaaaacaagcatccTAAACTCGATACCTgtaatatacatgtatatggACACACTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236496 lncRNA upstream 396919 20595241 ~ 20595444 (+) True G199796
XR_003402864.2 lncRNA upstream 740889 20234816 ~ 20251474 (+) True LOC113527335
TU237058 lncRNA downstream 375691 21384076 ~ 21386033 (+) True G200325
TU237068 lncRNA downstream 449034 21457419 ~ 21457764 (+) False si:ch211-216b21.2
TU237153 lncRNA downstream 601869 21610254 ~ 21610457 (+) True G200418
TU237157 lncRNA downstream 631309 21639694 ~ 21643654 (+) True G200420
TU237170 lncRNA downstream 644846 21653231 ~ 21654736 (+) True G200430
XM_026915458.2 mRNA upstream 74339 20912718 ~ 20918024 (+) True hhex
XM_034309461.1 mRNA upstream 238595 20663694 ~ 20753768 (+) True fmn2b
XM_034309462.1 mRNA upstream 238595 20663694 ~ 20753768 (+) False fmn2b
XM_034309463.1 mRNA upstream 270193 20663694 ~ 20722170 (+) False fmn2b
XM_026914594.2 mRNA upstream 334898 20559055 ~ 20657465 (+) True LOC113527089
XM_026914643.2 mRNA downstream 54077 21062462 ~ 21069464 (+) True LOC113527122
XM_026914644.2 mRNA downstream 54077 21062462 ~ 21069464 (+) False LOC113527122
XM_026915607.2 mRNA downstream 104091 21112476 ~ 21120953 (+) True tekt3
XM_026915385.2 mRNA downstream 131472 21139857 ~ 21152926 (+) True pmp22b
XM_026914739.2 mRNA downstream 449006 21457391 ~ 21500929 (+) True si:ch211-216b21.2
XR_004579324.1 other upstream 1425679 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 2180101 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 2180851 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 2482204 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 2833734 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 994439 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 1000126 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 1789796 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 2197281 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 2315688 23324073 ~ 23329571 (+) True G201214

Expression Profile