RNA id: XM_026915256.2


Basic Information

Item Value
RNA id XM_026915256.2
length 1623
RNA type mRNA
GC content 0.48
exon number 4
gene id srsf2a
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 22008511 ~ 22012304 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGGAAGTGTGCTTGCCGCCATTTCAGGTTTAGGCGCGCGGCGTGTTCGGTTGTGTGTCTCGAGTAGGCGAACGgcgtttttcttctttttcttttcaactcggttttatttccactttatcatttttaaaaggtGAGTAAAGAAGTGAGAAGCAGAGATGAGTTACGGTAGACCTCCGCCCGATGTCGAGGGCATGACCTCGCTGAAAGTGGACAATCTGACTTACCGAACCTCGCCCGAGACGCTGCGGCGCGTTTTCGAGAAGTACGGCCGCGTCGGAGACGTGTACATCCCGAGAGACCGGTACACGAAGGAGAGCCGCGGGTTCGCCTTCGTGCGCTTCCACGACAAGCGAGACGCCGAGGACGCGATGGACGCCATGGACGGCGCGCTGCTGGACGGACGCGAGCTGCGCGTGCAGATGGCGCGCTACGGACGACCGCCGGACTCCCACTACGGCCGCCGCGGAGGACCGCCGCGCAGATACGGTGGCTACGGACGGAGGAGTCGCAGtcGCAGTCCCCGGCGCAGGAGACACAGCCGTTCCCGCAGCAGGAGTCGCTCTCGCTCCAGAAGCAGATCTCGCTACAGCCGCTCCAGATCCAGGAGTCGCAGTCCCCGCTCGAACAGAGCGTCCAAATCCAAGTCGAGGTCCAGGTCCAGGAGCAGACCCAAATCCCCTGAGGCCAACGGAACCGCCCAGGAGTCGTGAGCCCGAGTGCAGATGATGTCAGATGAATGAGTCTTCATTCCGAGGATCACATCGAAAGAAAAGTCCATCTGAGGATTTCTATATTCACCTTATCAGACCAAAAGGTTGTTGCAAACTCGGTCTacatctttttaaaacttttttttttggcctttgTTCAGTTGACCAGAATTTTCTGTACCATATTTTGAAGTGTGTGATcatattgaattgaatatttgcGCTTAAGTGAGATTCTTAggtggaaagttttttttttccttcatattttttttttgctagtttgttcatttgtttagtACTTCATGTAAGTAATCTTCCAGCCAATAAAGTAAGttcattttattcaattcaTTACGTCTTTTCTTTAATGCAGTGTGTATTCAAGTCTCTAATGTAATAAAGCTGATTTTTCATCTCTGTATGTAAACTCTGGCCAGATGTTTAGCCCTAACACATGCAAGTGTATTAAAATTTGGACAAACGCTTTTCACGTAAAATCACATTCTCTAcctatttggatttttttttctcttgtgtgtgttacctgctaATTTGGCATATCTGTGATTTTCTAATGCTCTCccttgtgtattttttgtgcACTAGGCGCAGTTGCGCAGCAGTTGAGTATTGCTGGTTAGCTGTTAAGGTGGCGTGTTGCAGTGCAGAGTGCTTGGCTGTTTCCAGTATTCTCCTGATTGCTCCCGTGTAACGCCTTGATTTGACGGTTTTTAAAGCTGCAGCAGAATGACCTGCGCGGGTCCTTCCTGCAAACCTTTCGTTCGATTAATTTACGCAGTGGGAGGTAGTGCACCAACATTATCACGTTTTCAATGGCAGCATTTGTTCTGTGGAAACGTACACAGCTGTAAGCTCCATGTGAATGCTAATAAAATTTTTGTGCTAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12891 SRSF2_8, SFRS2A_B; serine/arginine-rich splicing factor 2/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237320 lncRNA upstream 8619 21999686 ~ 21999892 (+) True G200569
TU237312 lncRNA upstream 19757 21988186 ~ 21988754 (+) True G200561
TU237311 lncRNA upstream 20642 21987520 ~ 21987869 (+) True G200560
TU237310 lncRNA upstream 21510 21986362 ~ 21987001 (+) True G200559
TU237307 lncRNA upstream 29130 21979083 ~ 21979381 (+) True G200556
TU237327 lncRNA downstream 1502 22013806 ~ 22026481 (+) True LOC113527202
TU237575 lncRNA downstream 102102 22114406 ~ 22114822 (+) True G200779
TU237582 lncRNA downstream 111929 22124233 ~ 22242312 (+) True G200784
TU237612 lncRNA downstream 335586 22347890 ~ 22348118 (+) True G200807
TU237831 lncRNA downstream 854604 22866908 ~ 22868838 (+) True G201019
XM_026914657.2 mRNA upstream 41764 21961174 ~ 21966747 (+) True nat9
XM_026914659.2 mRNA upstream 42234 21961118 ~ 21966277 (+) False nat9
XM_026914660.2 mRNA upstream 42234 21961171 ~ 21966277 (+) False nat9
XM_026914870.2 mRNA upstream 49293 21936415 ~ 21959218 (+) True itgb3b
XM_026915823.2 mRNA upstream 218284 21783029 ~ 21790227 (+) True kcnj2a
XM_034309366.1 mRNA downstream 1772 22014076 ~ 22025694 (+) False LOC113527202
XM_026914805.2 mRNA downstream 16785 22029089 ~ 22035625 (+) True LOC113527221
XM_034309324.1 mRNA downstream 25668 22037972 ~ 22089270 (+) True si:ch211-119c20.2
XM_026914927.2 mRNA downstream 25668 22037972 ~ 22089270 (+) False si:ch211-119c20.2
XM_026914928.2 mRNA downstream 25668 22037972 ~ 22089270 (+) False si:ch211-119c20.2
TU237322 other upstream 5237 22002824 ~ 22003274 (+) True G200571
XR_004579324.1 other upstream 2441827 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 3196249 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 3196999 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 3498352 18441886 ~ 18510159 (+) True G198737
TU237829 other downstream 785877 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 1193362 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 1311769 23324073 ~ 23329571 (+) True G201214
TU238026 other downstream 1345207 23357511 ~ 23398660 (+) False polr2a
TU238950 other downstream 2369483 24381787 ~ 24382287 (+) True G201962

Expression Profile