RNA id: XM_034309423.1


Basic Information

Item Value
RNA id XM_034309423.1
length 2448
RNA type mRNA
GC content 0.46
exon number 7
gene id slc16a12b
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10053473 ~ 10062239 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAGTATGCAGGTTGGGAAGTAGCCCGGGAAACGCGCGAGCTTGAGTGCTGGAGGTCCACATCCGTCCCACAGCATGCTCAGTGGAGTCTCCTGTACAGAGCAGCATGATTCCGCTGCTGCAGACTCGGGCGCCGGAGGAAACTTTTCCACTGCGATAAGATGATGGGGGCAACTCAAAAGTTACACAATGTTTAACTTGTTTATAGCTTTGAGTTTGGTTAGTGTAGAGCGGTTTGTGTTGTGGAGGCCCATGAGGAATCAGCGCACTGTTTAAGTGCACGAGGCTGCTGGCTGCCGCAATGCAAGAAGTGGAGGTGGGTGCAGCTTCCATGGCtcaggaaaagaagagaaagaagacagCAGGAGTGCTTCCTCCAGATGGCGGCTGGGGCTGGATGATCGTGGCCGGGTGTTTCATGGTCACTGTCTGCACTCGTGCAGTAACAAGATGCATCTCCATCTTTTTTGTCGAATTTCAAATGCATTTTGCACGTGATTACTCTGGGACAGCATGGATCCACTCGTTAGTagactgcaccaccatgctgtgtgCTCCTCTGGGCAGCCTGATTGGGAATCAGCTCTCGTGTCGTGTCGCTGTGATACTTGGAGGATTCCTGGCCTCTATTGGAATGGTGCTTAGCTCTTTTGCCACCAGTTTAGAGTACCTCTACCTCTCTCTAGGTGTCTTAACTGGACTTGGCTTTGCTCTCTGTTACACACCAGCTATCGCTATGGTTGGCGTTTATTTCTGCGAGAGGAAGGCTTTGGCTTACGGCATAGCTATGTCTGGCAGCGGCATCGGCACGTTCGTGCTGGCCCCTGTGGTGCAGCTACTGATTGAACACTACTCTTGGCGCGGTGCTCTGCTTATCCTGGGAGGCTTGGTGgccaacctgtgtgtgtgtggagctctgCTAAGGCCTATCACTCTCAAAGAAGAGGAAGCCTTCCCCCTGCCAGTGGACTCTGAGAGTGGATACAGTTCAACACCTCTGACATCTGAtcagaaagagacaaacagcCAAGAGCAGAAAAACAGCAAGCAGCGCTGCATGCACTTCATGCAGGACTACCATTTCCTGCTTATGCCCGACTTCCTGGTCTTGGCAGGGTCCTTCCTGTTCCTGGCCAGTGGCTGCAGCCTGCCGTTTGTTTACTTGGTGCCCTACGCGCTAGACGTGGGTGTCAGTCACTACCATGCTGCCTTTCTTATGTCTATTTTAGGCGTTATTGACATTGTGGGCAACATTACCTTCGGCTGGCTCACAGACAGAAGGTGCCTGAAGAAGTATAGGAGCATTTGTTACATGGCTGCTGTGGGTATGGAGGGTCTCTGCTGCTTCCTCATCCCTCTCCTGCGTACATTCGCCCTGTTGGTGCCCTTCTCAGTGCTCTATGGCTATTTCGATGGTGCTTATGTGGCCCTTATTCCCGTGGTGACATCAGATGTAGTGGGGACAGCATGCCTGTCGTCTGCACTTGGTGTTGTGTACTTCCTGCACGCTATTCCATACCTGCTTAGCCCCCCTATTGGAGGCTGGTTGGTGGACACCACGGGCACCTACACTGCGACGTTCTTCCTCAGTGGCTTTGCGCTCATCTCCAGTGCTCTCCTGCTGTGCACCATCACTGTGGTTCGCCACTGCCAGAGAATTCAGAGGAACTCACTAAGCAAAGTCTccacaacagaaacatgtgAAGCCAAACAAGCAGAGTTTTATACTGCAAAAATCTTATAGTGTTGGACCTATCATTGATACGATctgttatcttttatttttgtacaaaatGCAGGTACATGAACTTCAGTAGTcggtgggggaaaaaacatttgtaCCATTACCagcacatttccacagtctcaAATCCCATTAGTGTGCCTTTTCTATCTGGCTAACTTCCTGTTGAAAAGCATTTCATTGTTAAGCTGTAAatgaaaagctagaaacagaaAAGTTGCGTTAGAGTTGGTGCATATTGCATCGAGTTTTTTATAAAGTGTTTGTCCAAAAGTGTCATATAACTTGAGAATGTGTTTGTTCCGTTTTACACTAGTATTAATGTACTCTGGTAAAAAGAAATATCTATTTTCTTATGAACAGAATTGTGCAAGATTTTATCAGCTTCATGATTTTTCTTTAAGTAGGGAAGACCAGGATTTTGGTAACATAAATCAGCTTGGAAAAGAAATGAGTGCCACAAGAGGGCAGTGCTGAATTAACTACAGTCTACAAGCTTGAATGATTGTTGGAAGCTGCCATGTTGGCACACAATGTTTATATCGAGTACAATGACAGATTAAATAGTGTTTAGTGAGACTTTTTATAAGCTAGTTTTACATATcatctttattttatgaacaaagAAAGAGTTACAGTGTATTTTACAATAAACATGTATTAAACTAAATTATGATTAATAAAAGATTAGCTCAGTGAAATAAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229298 lncRNA upstream 226609 9825427 ~ 9826864 (+) True G193646
TU229297 lncRNA upstream 229005 9824047 ~ 9824468 (+) True G193645
TU229153 lncRNA upstream 272518 9694909 ~ 9780955 (+) True G193544
TU229145 lncRNA upstream 387957 9663930 ~ 9665516 (+) False arhgap23b
TU229133 lncRNA upstream 400213 9652172 ~ 9653260 (+) True G193542
XR_004579148.1 lncRNA downstream 82114 10144353 ~ 10148786 (+) True LOC117598497
TU229556 lncRNA downstream 162463 10224702 ~ 10226319 (+) True G193842
TU229539 lncRNA downstream 262717 10324956 ~ 10329985 (+) False G193828
TU229536 lncRNA downstream 263401 10325640 ~ 10336247 (+) True G193828
TU229537 lncRNA downstream 270667 10332906 ~ 10336247 (+) False G193828
XM_026915398.2 mRNA upstream 279 10043909 ~ 10053194 (+) True pank1b
XM_034309439.1 mRNA upstream 279 10045229 ~ 10053194 (+) False pank1b
XM_034309358.1 mRNA upstream 25352 10025230 ~ 10028121 (+) True LOC117598566
XM_034309443.1 mRNA upstream 27897 10014548 ~ 10025576 (+) False kif20bb
XM_026914636.2 mRNA downstream 14778 10077017 ~ 10078115 (+) True ch25h
XM_026915769.2 mRNA downstream 35130 10097369 ~ 10101788 (+) True acta2
XM_026915532.2 mRNA downstream 56649 10118888 ~ 10124842 (+) True ankrd22
XM_026915533.2 mRNA downstream 56948 10119187 ~ 10124842 (+) False ankrd22
XM_026915217.2 mRNA downstream 73677 10135916 ~ 10166915 (+) False rnls
XR_003402888.1 other upstream 418406 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 539638 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 540842 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 541233 9512169 ~ 9512240 (+) False trnaq-cug_13
trnar-ccu_4 other upstream 543677 9509724 ~ 9509796 (+) True trnar-ccu_4
trnal-aag_8 other downstream 2306 10064545 ~ 10064626 (+) True trnal-aag_8
trnaq-cug_16 other downstream 1223958 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 2410444 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 3421062 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 3421062 13483301 ~ 13558429 (+) False tcf7l2

Expression Profile