RNA id: XM_026915305.2


Basic Information

Item Value
RNA id XM_026915305.2
length 4228
RNA type mRNA
GC content 0.47
exon number 10
gene id fam20cb
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10532417 ~ 10564750 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCGCCGCTTTAGCCAATcccgtgtctgtgtgagtgacGCTGAAGCGGATCGGAGGAGCGcccctttaacacacacacccacacacacacacacgcacatacacgcacacacacaacgcGACGCACCAGAGCAGAGCGCGAGACGCTAACCGTTTCAGTGCTGTCAACAGACCAAATAAAAATCTTGCCCGCTTGTCATCGCGGCTTTCTCGGCTGTGCCATGTGAAACTTCCGGGAAGAATCTGGCGTCCTGGTCGAGGAGAGGCGCAGCGCTTTCTTCTCCTAACGTGCCCCGGGTTTTGTTTTCGGCTCGCGTCACGCTGTGCTTGATCGAACCTGCTCTGTCGGGGATAAAAAGCAGGAGCGAGCACACGCACATTAGATAAAGCGCGTTTGCTGAAGAGGCTCTGCGCTCATGCAGAGCTCCACTATCTCTCTGCGACCTGCCAGTTCCACGTTAACCCGTTTTATTTTGATGGACAGCAGTGAGTCGCACattacacactgcaaacatGTGCCGTTGCGTCTCTGTGGAGATTTTCATGGCGTCTTGTGATGcctttaaactttttaaaaaataggtgCTCAATTTCGGAGCGCACCGTGACTCCTTTTACTTTGACTGCTTTAATGGAATTTGTTTGTCACTGGGCTGGATTACACTTGAAGCAGACGTGTTGTTGAGAAGGAACTGGTTTCACATCCACAAATCGCCACATCCCGGTTGAAGCTGGCGCATGAAAGCCACGCTGTGCCGTGCGTCCTGCTCAAATTGGCCACTCGCGTCGTGTGCACCGTGTGCGATGTAGCGCGCCTTCTCACTTTCCTCCTTCTCATTCCCAATAAATCTTGGGGCTTCACCGAACAAGAGGGCCTGAAGATGATCCTCTTCCGCAAATTCCGGGTCTTGATCCTGACCGTGTTCCTGATCGCATGCTCCTTGCACATCATGATTGACTTGTTGCCGCGGCTGGAGAGTAAAGGCACCGGCGGCTGCTCCTGCTCTCACACGCCCAGCGAGGATCCGCGCAACTGGGCCCAGCCTCCGGGCCGAGCCGCCGCCCCGGAACCTCTCCTgcctcacaaacacactctgcGAATACTGCAGGACTTCAGCAACGAGCCCGGCTCCAACGTGTCCTCACACTCGCGTGAGAAGCTGAGCCTGGCCGGGGAGAAGACGGAGGCGCGGAGGACAGGTGAGCACCGCGCCAAGGCGGGACAGGAGCGCAAGCAGGAGGCGCGAGCAGCGGGAGCGAGCACACACTCCAGACTCGCAGCGCTGTTCGAGCACCCGCTCTATAAGAGACCTTTACCTGTCCTCACTGACCAGGACACACTGTTCAACGTCAACACCGACATCAGGTTTGACCCCAAAGCAGCGGACAACCAGGAGTGGCATGGACAGGAGAAGAATGGGGAGTACACCCCTACAGGTGAGCTCACCGCAGACTCCTACCCTAACTGGCTGCGCTTCCACATTGGCATCAACCGCTATGAGCTCTACTCCCGCCACAACCCCGTCATCGATGCAATGCTGAAGGACCTGATTACACAGAGAATCACCAGTGTTGCCATGAAATCTGGAGGCACGCAGCTGAAGCTCATCATGACATTCCAGAACTACGGCCAAGCGCTCTTCAAACCTATGAAGCAGACACGGGAGCAGGAGACGCCTCCGGATTTCTTTTACTTCTCTGATTTTGAGAGACACAATGCCGAGATTGCAGCTTATCATCTGGACAGAATCTTGGATTTTCGGCGTGTTCCTCCAGTGGCTGGTAGGCTGGTGAATATGACCAAAGAAATCAGAGACGTAACCAGAGACAAAAAGCTGTGGAAAACCTTCTTCATCTCTCCAGCCAATAATATCTGTTTCTATGGCGAGTGCTCGTACTACTGTTCCACTGAGCATGCTCTGTGTGGGAAGCCAGATCAGATCGAGGGATCTCTGGCAGCATTCCTCCCGGACCTGGCCCTGGCCAAGCGCAAAACCTGGAGGAACCCATGGAGACGCTCCTACCACAAGCGCAAGAAAGCTGAGTGGGAGGTGGATCCAGATTACTGTGAGGAGGTGAAACAAACTCCACCATATGACAGCGGCACTCGTCTGCTCGACATCATGGATATGACCATCTTTGACTTCCTTATGGggAACATGGATCGTCATCACTATGAGACATTTGAGAAGTTTGGAAATGAGACTTTTATTATTCACCTTGATAATGGAAGAGGATTTGGCAAACATTCCCATGATGAAGTCTCGATTCTGGCACCTCTGAGTCAGTGTTGCAGAGTGAAGAAGTCGACTCACTTGCGGCTGCAGCTGCTGGCTAAAGAGGAATACAAGCTGAGCTTTCTCATGGAAGAGTCACTGCAGAGAGACTCACTGTCCCCCATCCTCATCCAGCCCCACTTGGAGGCCATGGACCGCCGTCTGCGCCTCGTGCTGCAGGTGCTAGCTGACTGCATCGAGAAGGAGGGCTACAGCAGTGTGGTGGAGGACGACATGACATCAGAAAGAATGGACAAAGCCTCAGCTCCTCGGAGGTAGTAGGTCTGGAGGAACTGGTCTCCCGGCTTTCCAGCACGTCTCAGCAGACAACGAACTTCTCACAGGGGAAGCTCTCGAAGATGACTTTTCTGAATTCAGTGAATTCCAAAGACTCCGTCCGCAATCGGTGGACCATGTCTGTCATGTTAAAGACATACATGTGGACAACATGTGCATCGCTGCCTGAGTATGTGGACATTTGTGTCTTAATGCAGTATAATGGGggtcttttattcttctctttaTGGCAAAGAAGAACTGTGCATTTAACAgaggtttctgttttttaagTCGAAGAGCTTTGAGTGGAGTGCAGGTTAGCTCCAATATGTGTAGCTgccaataattatttattaagttttatatttattttcgaGAATTGTTTGACCAACTTCTTATGTCAGTACAGAAAAGAGGGATGGATTCAGAGAAAACGTTAATGAAATTTCAGTGTTTGTGATAGCATTTAGAAAGTGACTGTTTTGTGTATTAAAGACATTCCTGATATAGCCTGTTGGATACCAAGAAAATCTTACTTATCACTCTCTCAGTATCAGTAAATCACATTAACGCAATCTTTATGATTACCTGAAAGGGATTTTAGCAAATCtaatcataattataataaaagcaTATTAGAGAGGTTGCCTAATATTGTGAGTACTGGGTGTGTTCATTTATAAGACAAGCTGGGTTGACACACAGAACAAATAGTAAATTAATTACATCATATATATTAGAGGTAAATACTTGAATGGACCAGCATTCTTTGCGTTTTTACCTTGAGGTTTAGCTTACATGTAAAACAGTGGTATTTTGGCAATGCGCACACATCCGCATCCGCATTCACCAGATCCTCTCCATATTTAACAGTTTGATTTTCACtgatttacaatattttattggGCTTTGTATAAACTGTGGTGTTATCATACTAGGCTGGAACGCTGCTATGTCAGAAGACTCAACATTTAGGATTTCGGAGCAAGCAGGGTACTGAGATATGCACGGCTGTGCAGGAAAAGCGCTCTCTTtctcgctttctttctctctctcactcggtGGAAAGATGACTGGGTCTCTCCTCCGCTATTAAGCATGaacttctctgtgtgtttggtcaaaaggcttttattttattaaacacccTTTCTTGTTTATACTAAACCTTATTCGCAAGGGTTTTTACAGTCTATTTACAGAgttttatcacatttatttccaatatattttaaaattctggtGTTGACATTATGTATAAGCTTTGCATTTACTTTACCATTATTTCctgtcctttttttatttttaaaggaagaGTGAATGTGGGTGTTAATGTACAAAGCAAAGACTTTAAACTGCACTAGAGCATATTTCAGTATCTGCTGGAAAAGACCTGTACATATTATGTGAATCCATTACCTGTGCAATCATAGAAATACTTGAACATGTGGGTTCTATATAAATGGGTTACGTGACTAAGCGATGGCATTGCATTGCCAAATTAAGGTAATTTGTTACATTCACTGTACATTATTTTACAGTGTTCATATTGAGTTCAGTCAGAAATATCACTAACATATGACCTTTAGAGATGCATACTTGCTTTTTAGTTGCACCGTTTCTGTGTAAGGTTTCATTTTCATGTCCAAGTGCAATAAATTGACCATTGCAGCA

Function

GO: NA

KEGG:

id description
K21958 FAM20C; extracellular serine/threonine protein kinase FAM20C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229700 lncRNA upstream 181797 10350199 ~ 10350620 (+) True G193972
TU229536 lncRNA upstream 196170 10325640 ~ 10336247 (+) True G193828
TU229537 lncRNA upstream 196170 10332906 ~ 10336247 (+) False G193828
TU229541 lncRNA upstream 196170 10332906 ~ 10336247 (+) False G193828
TU229539 lncRNA upstream 202432 10324956 ~ 10329985 (+) False G193828
TU229865 lncRNA downstream 29479 10594229 ~ 10662463 (+) True G194091
TU229853 lncRNA downstream 80188 10644938 ~ 10646453 (+) False msrb1b
TU229857 lncRNA downstream 95128 10659878 ~ 10660950 (+) True G194087
TU229892 lncRNA downstream 146571 10711321 ~ 10712015 (+) True G194113
TU230004 lncRNA downstream 215913 10780663 ~ 10780884 (+) True G194201
XM_026915821.2 mRNA upstream 44950 10418884 ~ 10487467 (+) True trrap
XM_034309040.1 mRNA upstream 45998 10417901 ~ 10486419 (+) False trrap
XM_034309042.1 mRNA upstream 45998 10417901 ~ 10486419 (+) False trrap
XM_034309041.1 mRNA upstream 45998 10418045 ~ 10486419 (+) False trrap
XM_034309043.1 mRNA upstream 45998 10428896 ~ 10486419 (+) False trrap
XM_026915794.2 mRNA downstream 2749 10567499 ~ 10569689 (+) True foxl3
XM_026915620.2 mRNA downstream 46665 10611415 ~ 10616737 (+) True noxo1b
XM_026914913.1 mRNA downstream 55284 10620034 ~ 10621503 (+) True rnf151
XM_026914751.2 mRNA downstream 77214 10641964 ~ 10644584 (+) True neurl2
XM_034309091.1 mRNA downstream 80076 10644826 ~ 10646547 (+) True msrb1b
trnal-aag_8 other upstream 467791 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 897350 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1018582 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1019786 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 1020177 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 721447 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 1907933 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2918551 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2918551 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 6291020 16855770 ~ 16863495 (+) False anapc16

Expression Profile