RNA id: XM_034309192.1


Basic Information

Item Value
RNA id XM_034309192.1
length 8783
RNA type mRNA
GC content 0.44
exon number 52
gene id LOC113527468
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13933904 ~ 13974593 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGATGCCGTCAAGACTCCAATGGTGATTGAGTGTACAAATAAGAAAGGTCTTGCAGAGAAGCTGGAAAATTTAGAGTCTAGGTTGGCAACATGTGAGAAAGCACTGGTAGAATATTTAGAGATCAAAAGACTTGCTTTTCCTCGGTTTTACTTTGTGTCCTCTGCGGATCTCCTGGATATATTGTCAAGTGGCAACAATCCTGTTGAGGTCACTAAACACTTGTCAAAACTGTTTGACAGCATATCCAATTTGAAGTTCCAACTTGATGAAAATGATAAACCTCTAAAACAGGCACTGGGAATGTAcagtaatgaaaatgaatatgttACATTTGATAGAGAATGTGACTGTTCAGGACAGGTAGAGACATGGTTAAACAGAGTGTTGGAAAGAATGGTGGAAACATTGCGAGTTAAATTTGAAGACGCTGTCACATCCTATGAAAAGAAGCCCAGAGAGCAGTGGCTCTTTGACCACCCTGCACAGATTGCTTTAGCTGCCACTCAGATTTGGTGGACCAATGAGGTGGGTAATGCTTTAGCAAAACTTGAAGAGGGATATGAAACTGCCATGAAGGATTACTTCAAAAAGCAGGTTTCTCAGCTAAATGCCCTGATCACACTGCTGATTGGTGAGCTCACTAAAGGAGATCGCCAGAAGATCATGACTATCTGTACAATTGATGTTCATGCTCGCGATGTTGTTGCTAAATTGATTGCTAACAAAATTGACAATGTTCAAGCATTTATGTGGCAGTCTCAGTTGAGGCATCGCTGGGATAACGTTAGAAAGCAATGCTTTGCCAATATCTGTGACGCACAGTTCCAATACTCGTATGAATATTTAGGAAACACCCCTCGACTGGTTATCACACCGCTAACTGATAGGTGCTACATTACTCTCACCCAGTCTCTCCACCTCATTATGGGAGGGGCACCTGCAGGCCCTGCTGGAACTGGAAAGACAGAGACAACCAAAGATTTGGGGAGAGCACTGGGTATTATGGTGTATGTGTTCAACTGCTCTGAACAAATGGATTACAAGtcttgtGGAGATATTTACAAAGGTTTGGCCCAGACTGGAGCTTGGGGCTGCTTTGATGAGTTCAATCGGATATCTGTAGAAGTGTTGTCTGTCATAGCAGTACagGTTAAGTGTATTCAGGCTGGCATccgtgaaaaaaaaagcaccatcGATTTCTTTGGGCAGATCATTAAACTGATCCCAACTGTTGGTGTTTTCATCACCATGAATCCTGGATATGCTGGCCGTGCTGAATTGCCAGAAAATCTCAAAGCCCTTTTCAGGCCATGTGCTATGGTTGTTCCTGATTTTGAGCTGATTTGTGAGATTATGTTGGTGGCAGAAGGATTTACCGAAGCCAGAATCCTagccaggaaattcatcactcTTTATAGTCTGTGTAAAGAATTGCTCTCTAAACAGGATCATTATGATTGGGGACTGCGTGCAATTAAGTCAGTGCTTGTGGTGGCTGGATCCTTAAAGAGAGGAGACCCAGGCAGACCAGAAGACCAGGTGTTGATGAGAGCCTTAAGAGACTTCAACATTCCCAAGATTGTGATGGATGACATGCCAGTCTTCATGGGACTTATTGGAGATCTTTTCCCTGCGCTTGATGTGCCTAGGAAGAGGAATATGGAATTTGAGAAGACGGTGAAGCAGTCAGTGCTGGATTTGAAACTGCAGGCCGAGGACAGCTTTGTGCTAAAGGTGGTTCAGTTGGAGGAACTACTAGCTGTCAGACATTCAGTCTTTATCATTGGCAGTGCAGGGAGTGGCAAGTCTCAGGTTTGGAAGTCTCTGAACAGAACATACCAAAACATGAAGAGGAAGCCTGTTGTAGTGGATTTAGATCCTAAGGCTGTTACTTGTGATGAGCTCTTTGGGATTATCAGCACTGCTACGAGAGAGTGGAAAGATGgtttgttCTCATGTGTCATGAGGGAGGTAGCTAACATAACTCATGATGGCCCTAAGTGGATTGTGTTGGATGGTGATATTGACCCCATGTGGATTGAATCCCTTAACACAGTTATGGATGACAATAAGGTGTTGACTCTGGCCAGTAATGAGCGTATCCCTTTGAACCCCACCATGCGACTAGTCTTTGAGATCAAAGACCTTCGAACTGCTACTCCAGCTACAGTGTCTAGAGCTGGAATTCTCTTTGTAAACTCTGCTGACCTGGGCTGGTGTCCAGTTGTGACAAGTTGGATCGAGAAACGAGATGTCCAGTCAGAGAAAGCATATCTGCTCCTTTTGTTTGAGAAGTATCTGCCAGCTTGCTTGGAAAAGATCAAATTCAGCTTAAAACAAATAATCCCAATCCCAGAGATAACACTAGTTCAAACACTACTATACCTCATGGAGTGCCTTCTGGTTCCTGAAAACATTCCACCTGACTCCAGCAAAGAGCTCTATGAGCTTTACTTGGTTTTTGCCTGTGTATGGGCCTTTGGAAGTTCCATGTTTCAGGATCAGctAATTGATTATCGTGTGGAATTCAGCAAATGGTGGGTCAGTGAGTTCAAGACCATCAAGTTTCCATCAGAGGGCACAGTGTTTGATTATTTCATCGACAGAGAGTCAAAAAAATTCATTCCATGGACAGAAAAAGTACCTAAATTCACTCTGGATCCAGACATTCCACTGCAGGCCTCCTTGGTTCACACTTCTGAGACCATTCGTATACGTTATTTCATGGATGAGCtaatagagagaaaaaggcCAGTAATGTTAGTAGGAAATGCTGGCTGTGGAAAGTCTGTGCTCATGGGAGACAAATTGCGCAGCCTTAGCACAGATCAGTATATGATTCAGTCTGTGCCTTTTAACTTCTACACTACTTCTGCAATGCTCCAAGccATTTTGGAAAAGCCTTTAGAGAAGAAAGCAGGTCGTAACTACGGTCCCCCAGGAAACAAAAGTCTAATCTTCTTCATTGATGATATGAACATGCCTGAGGTAGACAAATACTTCACTGTggccccacacacactcatccgcCAACACATGGATCATGGCCACTGGTATGACAGACAGAAACTTACACTAAAAGACATACACAACTGCCAGTATGTGGCTTGCATGAACCCCACTGCAGGCAGTTTCACAATTGATCCTCGACTACAGAGgcacttttgtgtgtttgctgtgagCTTCCCTGGACAAGATGCCCTGTTCAGCATCTACAACAATATCTTTTCACAACACCTAGGCATTAATGGATTTTCTCCTGCACTAAAGAATTTCTGCTCAACATTTGTTAACTCAGCTCTCATTTTTCATCAGAAGATATCAACATCTTTTCTTCCAACGGCTGTCAAGTTTCATTATGTATTCAATCTTAGAGATCTGTCCAACATCTTCCAGGGTTTGTTGTTCTCCACTCCAGAGTGTGTGAAAGATCCTTTTGACCTAATCAGAATCTGGCTGCATGAATGCAACAGAGTCTATGGGGACAGGTTAACAGATGAAAAGGACATGGAACTCTTTGAAAAGATTCAGGAAGATATCTGTAAAAAATGCTTTGAGGTTCTCTTTGAGGATGCCATGTGCCATATTTGCAGGATTAACCGTATACTGGAGAGTCCCAGGGGCAATGCACTGCTGGTGGGGGTAGGGGGGAGTGGAAAACAGTCCTTGTCTCGTTTGGCAGCTAGCATCAGTAATTTAGAAGTGTTTCAAATCACTCTTAGGAAGGGCTATGGGATTTCTGACCTAAAGTTGGACCTAAGTGCTCAGTACATGAAGGCTGGTGTGAAGAACATAGGCACCGTGTTCTTGATGACAGACTCTCAAGTGGCAGAGGAGGCATTCCTGGTGCTTATTAATGATCTGCTGGCCTCAGGGGAAATCCCTGGCCTGTTCCAGAATGATGAGGTTGAAAACATTATAGGTGCTATGAGGAATGAGATCAAAGGCACTGGCCTGCAAGACACGCGAGATAACTGCTGGAAATTCTTCATTGACAGAGTTAGGAAACAGTTAAAGGTGATTTTGTGCTTCTCCCCAGTGGGCTCAACTCTAAGAGTTCGAGCTCGCAAATTCCCTGCTGTAGTTAACTGTACATCTATTGACTGGTTCCATGAGTGGCCAAAAGAAGCTTTGGTGTCTGTCAGCGCCCGCTTCCTTTCTGAGACAGAAGGCATTAAGcttgAAATCAAAGACTCCCTAAGTCAGTTTATGGCCTATGTTCACAAGACAGTGAATGACATGTCAAAATGCTACCTCCTATCAGATCGCCGCTATAATTACACCACCCCAAAAACCTTTCTGGAGCAGATTAAGCTCTATCAGAATCTGCTTAGTGTAAAAAGGACAGAACTACTATCAAAAATGGATAGACTTGTGCAGGGATTGGTCAAATTGGAGAATACTTCTGCACAGGTAGATGACCTGAATGCTAAACTGGCAGTTCAAAAAGTAGAGCTCAAACAGAAGAATGAAGATGCTGCTAAGCTTATTCAAGTTGTAACAGCAGAAACAGAGAAGGTATCCAAGGAGAAGGCCATTGCTGATGAGGAGGAGCTGAAAGTGCAAGTTATTGCCAAGAATGTAGGTGAGAAGCAAAAGTCTTGTGAGGAGGACCTAGCCAAAGCTGAGCCTGCTCTGCTTGCTGCACAAGAGGCTTTGAACACACTAAACAAGAACAATTTAACTGAGCTTAAGTCATTTGGCTCACCTCCAGAGGCTGTAGTTAATGTCACAGCAGCTGTGATGATCCTCCTTGCCCCTGGTGGCAAAATCCCCAAAGACAAAAGTTGGAAAGCAGCTAAAAACATGATGGCaaaagttgattcttttctgGACAGTCTGATCAActacaataaagaaaatatccCTGATACATGTATGAAAGCTTTTGAACCCTTCAAGAAAGACCCTAAATTTGAGCCAAACTTTATTCGCTCCAAGTCCATAGCTGCTGCTGGTCTCTGCTCATGGTGCATCAATATTGTAACGTTCTATGAAGTCTTTTGTGATGTAAAGCCCAAAAGGATGGCCTTAGACCAGGCCAATGCTGAGCTGGCTGCAGCCAAGGAAAAACTGTCTGTTATCACGTCCACAATAGCGCAACTGAATGCCAATTTGGCCGATCTGACGTCTAAGTCTGAGAAAGCTAGAGATGACAAACTGAAGTGTCAGAAGGAAGCTGATGCTACTAATAAGACTATTTCCCTTGCCAACagACTTGTTGGAGGTTTAGCATCTGAGAAGATCCGTTGGTCAGAATTAGTAGCCCAGttaaaaaatcaggaaaaaacTCTCTGTGGTGATGTCATGCTGATTTCAGCTTTTGTGTCATATGTTGGatatttcacaaagaaatatCGCACCGATCTCATGGATAAATATTGGCTTCCTTACCTCAGGGAACTTAAGGTCCCCATTCCCATCACAGAGGGTCTAGATCCTCTGACCCTCCTTACCGACGATGCAGATATAGCAGCTTGGAGCAACCAGGGTCTGCCTAGTGACCGCATGTCTGTTGAGAATGCCACCATCCTCTGCAACACTGAGCGCTGGCCACTGATCGTGGATGCTCAGCTCCGGGGTATCAAATGGATCAAGAACAAATATGGAGACAACCTCAAAATCATACGTTTGGGACAGAAAGGatACCTTGACAGCATAGAGAATGCAGTATCCAGTGGAGATGTATTGTTGATCGAAAACATCAGTGAGAGTGTAGAGCCTGTGCTGGACCCCCTGCTTGGAAGGAATACAATTAAGAAGGGAAAGTATATATGTATTGGCGATAAGGAGGTAGAATACCACCCTAATTTTCGACTCATACTTCACACTAAGCATTTCAATCCTCACTATAAACCGGAGATGCAGGCTCAGTGCacactgattaatttccttGTGACACGTGATGGGCTGGAAGACCAGCTGTTGGCAGCTGTTGTTGCAAAAGAAAGACCTGACTTGGAAGAGCTTAAGGCGGAACTGACCAAACAGCAAAATACATTTAAGATTGTGTTGAAGCAGCTAGAGGATTCCCTGCTTGCCCGTATCTCAGCTGCCTCAGGAAACTTCCTTGGTGACACAGCACTAGTGGAAAACCTGGAGACCACCAAGCATACTGCAACTGAGATTGAGCAAAAGGTGCTTGAAGCAAAGACAACTGAGGCAAAGATCAATGAGGCAAGAGAGAGTTATAGACCTGCATCTATCCGTGCAGCTCTGCTGTTCTTCATTCTCAGTGACCTTAATAAAATCAACCCCATCTATCAGTTCTCTCTGAAGGCATTTAGTAAGGTATTTGAGGTAGCCATTATGCGAACTGAGCCAGCAGATGATGTGAAACTGCGAGTGGACAACCTTATCAATGAAATCACGTACTCTGTTTTCATGTATACCAACCGCTGCTTGTTTGAGAGGGATAAACTCACATTCATTGCTCTGATTACTTTCCAAATACTGGTCAGGAGTAATGAGATCAACTCTTCAGAACTGGATTTCTTGCTAAGATTCCCTTTCAAAGCAGGCCTGGTATCACCTGTTGATTTCCTCTCCAACCAGGGATGGGGTGGCATAAAGGCTTTGGCTGAAATGGATGAGTTTAGAAATCTGGACACAGATATAGAAGGCTTAGCCACACGCTGGAAGAAGTTTGTAGAGTCTGAGGCTCCAGAGAAAGAGTTGTTTCCccaagaatggaaaaaaaagagtggcATACAAAAGCTGTGTATGATGAGATGCATGAGACCTGACCGTATGTGTTATGCTATCAGAAACTTTGTTGAGGCAAAGCTAGGGACCAAGTATGTGGATGGCCGCAGTGTGGAGTTTGCTGTGTCCTTTGAAGAGAGCAGCTCATCCACTCCTATGTTCTTCATTCTCTCTCCTGGAGTTGACCCATTAACGGACGTAGAGGCACTAGGTAAGAAGATGGGCTTTACCACTGGTAATGGCAAGTTTCACAATGTGTCTCTGGGTCAGGGCCAGGAGGTAGTGGCTGAGGCTGCTTTAGACCAAGCAGCAGTGGAGGGACACTGGGTCATTCTGCAGaacaTCCACCTCGTGGCAAAATGGCTGGGCAGTTTGGATAAAATAATAGAGAAGTACAGTATTGGGAGCCACACTGATTACCGTGTGTTTATGAGCGCTGAGCCAGCCCCTACACCTGACTCTCACATCATCCCACAAGGCCTGCTAGAAAATGCTATCAAAATCACCAACGAGCCACCTACTGGCATGCATGCCAACCTGCACAAAGCACTCAACCTCTTCAATCAGgaCACCTTGGAGATGTGCTCAAAGGAATCAGAGTTCCAAGTCATTCTGTTTGCTCTGTGTTATTTCCATGCTGTGGTGGCTGAGAGACGGAAGTTTGGAGCACAAGGCTGGAACAGGTCTTACCCTTTCAACAATGGAGATCTTACCATCTCTGTCAATGTCCTCTACAACTACCTAGAGGCCAATTCCGAGGTTCCCTGGGATGATCTGCGTTACTTGTTTGGTGAGATCATGTATGGTGGTCATATTACTGATGACTGGGACCGAAGACTATGCAGGACATATCTTCAGGAATACCTGCAGCCAGAGATGCTAGAGGAGGAAATGCAGCTTGTGCCGGGCTTTCCAGTACCACGTAACTTGGACTACAAGGGTTATCATATGTACATTGATGAGATGTTGCCACCCGAGAGCCCATATCTGTATGGATTGCATCCTAATGCTGAGATTGGCATCCTGACCGTCACCTCTGAGAAGCTCTTCCGTACTGTGCTGGAGCTCCAGCCCAAAGAGTCTGTCTCTGCTGGAGGTAGTGGTGCCTCACGAGAGGAAAAGGTGAAGGACATCTTGGATGAGATTTTGGAAAAGCTGCCAGAAGGATTTAATATGATGGAGATCATGTCAAAAGTGAACGTGAAAACcccttttattattgttgtgttCCAAGAATGTGAGAGGATGAATATACTTACCAAGGAAATCTCAAGGTCTTTGAAAGAACTCAATTTAGGTCTAAAGGGAGAGTTAACCATCACTACAGACATGGAAGAGCTAGGAAATGCTCTGTTTTTGGATACAGTTCCAGAGTCCTGGACAAAGCTTGCATACCCTTCTCTCCAGGGGCTGGGTGACTGGTATGCAGACCTCCTCCACAGAATCAAGGAACTGGAGACATGGACATCTGACTTTGCCATGCCTGCTGCAGTTTGGCTGTCTGGCTTTTTCAACCCCCAGTCTTTCCTTACTGCCATCATGCAGTCCACAGCCAGGAAGAACGAATGGCCTTTGGATAAGATGTGTCTGGCTGTAGAGGTGACTAAAAAGAATAGGGAGGCCATGACCACTGCACCTAGAGATGGTGCTTTTATCTATGGCCTTTTCATGGAAGGAGCTCGCTGGGACGTCCAGTCTGGTGCAATTGCTGATGCCCTTTTAAAGGAGTTGATGCCTGCTATGCCAGTAATCTTCCTTAATGCCATTCCCATGGACCGCCAGGAGACAAAGAATGTATACGAGTGTCCCGTGTACAAAACACGTATGCGTGGACCCACCTACGTTTGGACCTTTAATCTAAAAACTAAAGAGAAACCAACTAAGTGGGTGTTAGCTTCTGTATGCCTGCTTCTCAGTGCCTAGTGCACCATACTTTCAcagaggagaaatgtgtttttgtgatgttattTACTCCATAATTCTGCTATTTAGTTGTTTAGTTCTGTGTGCCCTTTCAAGCAAAATTCATTTGCTTCTTGGTTTTATGCCTTAATGACTAAAAGCCTTCTCAACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232108 lncRNA upstream 253456 13693715 ~ 13695761 (+) True G195994
TU231960 lncRNA upstream 330278 13618664 ~ 13618939 (+) True G195857
TU231948 lncRNA upstream 431331 13514676 ~ 13517886 (+) True G195847
TU231926 lncRNA upstream 482234 13466765 ~ 13466983 (+) True G195839
XR_003402861.2 lncRNA upstream 882595 13063864 ~ 13066622 (+) True LOC113527319
TU232344 lncRNA downstream 38980 14013573 ~ 14016247 (+) False tha1
TU232348 lncRNA downstream 48994 14023587 ~ 14043932 (+) True G196202
TU232423 lncRNA downstream 151925 14126518 ~ 14127031 (+) True G196265
TU232451 lncRNA downstream 188978 14163571 ~ 14166015 (+) True G196289
TU232454 lncRNA downstream 194715 14169308 ~ 14169812 (+) True G196292
XM_026915321.2 mRNA upstream 15798 13888509 ~ 13933419 (+) False cyth1b
XM_026915319.2 mRNA upstream 15798 13898603 ~ 13933419 (+) False cyth1b
XM_026915320.2 mRNA upstream 15798 13911861 ~ 13933419 (+) True cyth1b
XM_026915322.2 mRNA upstream 15798 13915249 ~ 13933419 (+) False cyth1b
XM_026915702.2 mRNA upstream 78213 13861384 ~ 13871004 (+) True sfxn2
XM_026915894.2 mRNA downstream 17630 13992223 ~ 13996169 (+) True socs3b
XM_034309653.1 mRNA downstream 39019 14013612 ~ 14034143 (+) False tha1
XM_026914595.2 mRNA downstream 47983 14022576 ~ 14034143 (+) True tha1
XM_026915931.2 mRNA downstream 234306 14208899 ~ 14233287 (+) True slc38a10
XM_026915204.2 mRNA downstream 262799 14237392 ~ 14246149 (+) True tepsin
XR_004579176.1 other upstream 390704 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 390788 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 1475478 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 2662949 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 3884591 10064545 ~ 10064626 (+) True trnal-aag_8
TU234137 other downstream 2881177 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 3602690 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 4180558 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 4467293 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 4831492 18806085 ~ 18812262 (+) True si:ch211-221j21.3

Expression Profile