RNA id: XM_026915320.2


Basic Information

Item Value
RNA id XM_026915320.2
length 2809
RNA type mRNA
GC content 0.40
exon number 13
gene id cyth1b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13888509 ~ 13933419 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGGTAAGCCACGCTCCGCCTGTGAAGCATGGCATTTTAGCACCCGTACTAACGGGTTAACTGCTTGATATTGTGAAGTGGTATTTTGAAGCGGTGTTTGAAGCGACTGTGTTGTTCTCTCCGTTTGAAGTGAGTGTAGGGAGACCAGTGTAGATTATAACCGCCTCAGGTTTGAGTGTTCTCACAGGTATTTACACGATATAAGGTCCAAGTCTGAAGGAGTGTCAACAATGGTGCTGAAATCAGAAGCTGGAGTCGTGCCAGATGACCTAACGCCAGAGGAGAAGCAGGAGCTGGAGAACATACGGCGCCGAAAGCAGGAGCTGCTTGAGGACATCCAGCGGCTCAAGGATGAGATAGCAGAGGTAACGAATGAGATTGAGAACCTGGGCTCCACTGAAgaaaggaAAAATATGCAAAGGAATAAACAGGTGGCCATGGGCCGAAAGAAATTCAACATGGATCCCAAAAAGGGGATCCAGTTCCTCATAGAGAATGACCTGCTGAAGAACATCTGTGAGGATATCGCTCAGTTCCTCTATAAGGGTGAGGGCCTCAACAAGACAGCCATTGGAGATTATCTAGGCGAAAGAGACGAGTTCAACATTGATGTTCTTCATGCTTTTGTCGAGCTTCATGAATTCACAGATCTCAACCTGGTCCAGGCACTCagACAATTCTTGTGGAGTTTCCGGTTACCAGGTGAAGCCCAGAAGATAGACCGCATGATGGAGGCTTTTGCACAGCGTTACTGTCAGTGCAACCCTGGTGTCTTTCAGTCCACAGATACCTGCTATGTTCTTTCATTTGCCGTCATCATGTTGAATACAAGCCTGCACAACCCTAATGTAAAGGACAAGCCTACAGCCGAGCGCTTCATAGCCATGAACAGAGGCATCAATGATGGGGGAGACCTACCAGAGGACTTGCTCAGGAACCTGTATGAAAGTATCAAGAATGAGCCCTTTAAGATACCAGAAGACGATGGCAATGACCTCACACATACATTCTTTAATCCAGACCGTGAGGGCTGGTTGCTGAAATTGGGGGGACGAgtaaaaacatggaaaagaaGATGGTTTATCTTGACGGATAACTGCCTTTATTACTTTGAATACACTACTGATAAAGAGCCAAGAGGGATTATTCCCCTGGAAAATCTAAGCATTAGAGAAGTGGAGGATTCAAAGAAACCAAACTGCTTTGAGCTCTTCATCCCTGACAATAAGGATCAAGTGATCAAGGCCTGCAAGACTGAGGCAGATGGTCGGGTGGTGGAGGGTAACCACACATTCTACAGAATCTCAGCCCCAACCactgaagaaaaagaggaaTGGATCAGCAGTATCAAAGCTGCCATCAGCAGAGACCCCTTCTATGAAATGCTCGCAGCCAGGAAGAAGAAGGTGTCATCTATAAAGAGGCAGTAAATCTTCCTGACTCCTTGAAACTTTGGGGCCCACATGTATATAACTGCTCAAGGTTAAGTGAAGAACACCCAAGTAAGAACTGGCCTGTGATATAGCAAGTGGACAAATGAAACCTAGAAGCCATAACTGTGGACTGGATCAGTCCTACTCAGGAATGCCCTGGTGTTTTAAGGGGGGAAATGGTTGCACTGGGAGTTTGTGTGAGCCTTAAGTGACATTGCTTCAGGATTGACTTTATGCTTCTTGagtaaacataaaaaacatgcagaaatcCTAATTCAGGGATTTGTATGTATTGAAAGGTTATAGCATTGCACAACAGAGGCTCTCAAACtacaaatgttacaaaataatAGCGTGTAAATTCATTATGTATAGCCTGTACCACTCTATGTATATCTTAAATCAGCAGGTCTGACTGTACAAGGCAACTGAATTCAAAGCTGCTGACAAACAGTTAtgtcagtttttgtttgtttgatacATGTACAGGCAGTAGGATAAGTAAATTATCTACACATCCTCCTGAATATTTCATAAGCCGTGTTTCTTGATCAACTTCCATTATGACATTCAAGTGACTTTTGGCTTGCTTGTAATAATTTTCTTTGTATAGTCTACTGTGACATTTTAAAGCTTCTTCAAATGAAGATATTTGCAATTCTCATCTGCCAAAACTATTTTTATATGCCTTCATGACTGATGCAGTGGATCGATTTTTATACTGATTTGTCCAGACTATTGTTCACAAAGCTGAAATGTCCCATTCTAACAGTGGCCTTACATCCTGTAATTTACAGTATAAACAAGACagattttccattttctttttttctctatttcaaCTTGGGACTGTTTACCTACttggcatttttgtttttgtttgtcctgATCCAGTAAAAGAAGGACACTTAAAGAAGGATTTGCTTTtgcattttcagctctctcggctttatttgcattattttcatacaacagcacggtctgttgtgtgttattccttacttatctgGGATAACAATGTTGCATTAAACTAaagtgcttattattattactgttattattattattattattattattttgtttgctaataataataatgatgatgatgggtttCTTTGTTGAAATGGATAGCAATGTTAGTACAagatatttcagtgtttttaactTGTTTCTTTGTTGAAGTGCACTGATAACTATGAGAAAAGGCGATGTTAATTTATCAGTTCTGTatatacttaaaaataaaaatcgtatttttgtctgaatgtgtttgtataaaaaatatGGCTTTGAGAAGACCTTCATCGGTTTGATTTTTTCACTATTGCCATGTAATCCTGAGCTAAAATAAAACTCCTCCATTGCAAACAAA

Function

GO:

id name namespace
GO:0030155 regulation of cell adhesion biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0032012 regulation of ARF protein signal transduction biological_process
GO:0005802 trans-Golgi network cellular_component
GO:0005886 plasma membrane cellular_component

KEGG:

id description
K18441 CYTH; cytohesin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232108 lncRNA upstream 216100 13693715 ~ 13695761 (+) True G195994
TU231960 lncRNA upstream 292922 13618664 ~ 13618939 (+) True G195857
TU231948 lncRNA upstream 393975 13514676 ~ 13517886 (+) True G195847
TU231926 lncRNA upstream 444878 13466765 ~ 13466983 (+) True G195839
XR_003402861.2 lncRNA upstream 845239 13063864 ~ 13066622 (+) True LOC113527319
TU232344 lncRNA downstream 80154 14013573 ~ 14016247 (+) False tha1
TU232348 lncRNA downstream 90168 14023587 ~ 14043932 (+) True G196202
TU232423 lncRNA downstream 193099 14126518 ~ 14127031 (+) True G196265
TU232451 lncRNA downstream 230152 14163571 ~ 14166015 (+) True G196289
TU232454 lncRNA downstream 235889 14169308 ~ 14169812 (+) True G196292
XM_026915702.2 mRNA upstream 40857 13861384 ~ 13871004 (+) True sfxn2
XM_026915381.2 mRNA upstream 63182 13837408 ~ 13848679 (+) True trim8b
XM_026915837.2 mRNA upstream 75491 13826107 ~ 13836370 (+) True mfsd13a
XM_034309287.1 mRNA upstream 114211 13795093 ~ 13797650 (+) False mrpl43
XM_034309193.1 mRNA downstream 485 13933904 ~ 13974593 (+) True LOC113527468
XM_026915312.2 mRNA downstream 12728 13946147 ~ 13974593 (+) False LOC113527468
XM_034309192.1 mRNA downstream 15798 13949217 ~ 13974593 (+) False LOC113527468
XM_034309191.1 mRNA downstream 15798 13949217 ~ 13974593 (+) False LOC113527468
XM_026915313.2 mRNA downstream 18374 13951793 ~ 13974593 (+) False LOC113527468
XR_004579176.1 other upstream 353348 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 353432 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 1438122 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 2625593 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 3847235 10064545 ~ 10064626 (+) True trnal-aag_8
TU234137 other downstream 2922351 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 3643864 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 4221732 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 4508467 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 4872666 18806085 ~ 18812262 (+) True si:ch211-221j21.3

Expression Profile