RNA id: XR_004579166.1


Basic Information

Item Value
RNA id XR_004579166.1
length 4932
RNA type misc_RNA
GC content 0.43
exon number 5
gene id si:dkey-94l16.4
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8847662 ~ 8857748 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTGACAATAATGCTTGAATATTAGCACAGCTTTGACAAAGCTAGCTTAGCTTTACTATGGACACAGCACTTGGCCATTGTGTCGCGCAAAGTCAGCACACTATTATAAAggtttttacagttaaagtcaTCAGTTAATTGGTGTCGGAATGGGGTTTAGCTTGTTGCATAATTCCGCGTATTAACCCAACGTCTCTTTGTGGCTGATATGGAACAGCCTTCTGACACCTCAGATGGTTTACAGCCTCAGGAACTCTCCTCCGCCTGCAACCTTCCTCGCGTTTTTGACCTGTCGAAGAACAGCGAAGAATGTCTGTTGAAAACCAACTCGATAGAGGCCTTGCATGTTGTCCAGCCGCCAGGCTGGTATCTGACTTCTGGGACCAGCAATGGTTCAGTGCTTCCAGAAGACGAGACTGATCCTTCACTGCAGCCCAGTGAGCAGATCCAACCAGACAATGCGCTTTCCAACACAACGGTTACGCTCTCATATGTAACCAGGTCCCACGTCTTTTCTGCCCATGACTCACTCTCACAGCATTCGCAGATTTACAGTGTTCCAATAAGCAAGGCATTTTCTCTACACCCCACTACGTACGATGCCAGCCAGCTGGTCACCGATGCAGGTGGAACGCCGCTCTGTGTGGAAATGGACCAACACTGCCTGCAGCAGGTGTCTGTGCCTGTTGGCTTAGCCGCCTGCGCCAGTCCGTTTGATTTTGTCACGCCAGCGCAGGTTGTGGAGAATGTTGCAAGTCTCTGTTATCTTCAGCAGGCACACAACATTAGTGGTATACAAGATGTTGAGAGCCTTGCTCTGGAGACGCTCAGATCTTTACAACAGAACAACCCGGCTGAATGCAAGATTCCTCTCAACCTGGACGAAATTCAGAACGGCGCCGTCGGCAGCTTGTGGAACACGGGATCTCTTGACGGGAGCTTTCCAGCTGGCCATGTTGAGAACATAGTGGATCAGCACAAGAACGGCAACCCAGAAGTACTTTTCCTGATCTCCAGAACTGATGAACCAGTTATTTTACCGAATGATCAGGAGCCGGCAGGTCTTGCTGTTTCACTAAATCAAGAGTTTATAAGTGCACTGGATGATTCTGTGTCACCCCCCTTTGCCTCACTGATTGGAGTAAAGGATGTTTCCATTCTGCCCCAGACTGCAGGATCCCAAATTGAAGAGAACTCTCTTGCTGAAGAAACTAACACTAGGCAAGATGAATTAAGTAATGTGGAATCTGATCTTCTCACGAGTGTGGAAGAGAGAGATTCATCATCTGCCACTGATGCATTAAGTACAACCATTAGCAGTGAACTAACAGAAAATGCTGTTGACACATCCAGGTCAGAACAGTCAGAAGAGAGCAGGGCATTATCGGAGGTACAGAAAGAGGAGACACATGTGCATAATGTGACACACAAGAAAACGCCTTTGCCTAGAAGTTTGTTTGCCAAAAAGGAAACACTAGTAAGAAAAGAACTTCCCCCAAGATCTAGAAGAGGGATGAGGTTAGAGGCCATTGTTCAGAATATCTTCCCTTCCAGGTACAAATCTAGTCATGTCtcttctgcaaaaaaaagtcGGCGTTCTGACGCCCAGCCGGATGAGACCACTCATCTGGGATCTAGCCAAGATGTGTCATTTggcaacaacgacaacaacgtTTTAGAGGAGGAATGTCCTCCGAAGGTTGGGACTGAAACTAATGAAAAGACAGCTCAATTACAGGAAGAGTCAGAAGAAACAGATGTCGCTGATTCAAGCAAAATATCTACCTCATGTTCTGAAACTGTTTCAAAACATTCACTAGCTAACCCATCCCCTGGGATGTCACACAAACCCATTGCATATGTCAAGAAATCAAAGAAACGACAGAATTTTTCAAACCATTCCCCAGTAAGGGTAGGAAAAAGGACTGCACTGCCTACATCCAAACGTACAAAAAGCCCTTTAAAGCAACGGACTTTAACTAAGAGCAACAAAAGTTCAGCAAGAGCGAAAAAAGTTCATACCcctaaaaagaaaaggaaaacgCATAAAGTGGGGCAGTCTTCCATGTTCTCCCCCCAGGAGCCGGAAATAAAGCTTAAATACGTCAGCtataaagaagagaaaagggaaaagagagaTGAAACCTTCTCACCTTTCGTTCATGTAGAACTGAAAGCATATCCTACCTGTACGGTAATCAACTACCCTGACGAGAGTCCCAGGCTGAGTCGAGGGAAGCAGCCTACACCAGTTGTGTCAGGGAAAATACCCACTACACCATGTCTGCAGTATGGCCGCGTCTCCATGGAGGGCACACGCTGGGACGCTCTTGTGTGCTGCCTTTGCGGAGGCTCTGCTAACGCTATGGACCTGGGTGATTTGCATGGACCGTACTATCCTGAGGGTTTCAGGCCTGAAGCAAGGCTGCCTACTAATCCTCAGGAGCCGAGAGAGGATGACTCCAGCGAATCGGATTCATCAAGCAGTCAGACTCGAAAGCCACATCACAAGCTGCAGGCAGCTGCTCTAGGGGCCTATCAAACATGGAGCAGTGATGGTGAGCTTTCCTGCAGCCCTGCAGCTAAGAGATCCAGAATGGACACTGTGACAGACTGGTATACCCCACCCATAGTGCCCTTAGAAGCCAGCGAGTACTGGCTGCACGAGGACTGTGGCATATGGTCGGCTGGGGTCTTTCTCGTGAGAGGGAAGCTTTACGGGCTAGAGAGAGCTGTTAAGATGGCAAAGGAGACGATTGTGTCTTATATGAGGAAAACTTCTCAATGAAATGCAGAAAGCACAAGAACAAATCCATCAAGGGTGTATCATCTAACAAACAGAACAGCAGGTGACAGGGGAAGAAGATGCTGCACAAGAACCAGAATGTTGTCTGCGGGTTCAGCCACTAGTCTGCCATGCTCAGAGACCAGGGGCAACTGACAGAAAAGCCTCTCTGGGACTCAGACACCACATACCTTAATGCTTTCTCCTGCCGTTTCACTGTCACTAACTTCTCTTCCAAACGTCAGCCGCACCGACTGATTTCAGACACGTCAACACAGCTTTTGCATGCTTGCGGCTGTTTACAGATGAAGCCTAGTGTCTGAAAAGATCCTCAGTGAAGTATCCTTAAAGACAGTGGGATGTAATCTAGAACTagactctctctcactctctctctctctctctctctctctcactctctctctgggaGGATTTGCTCTGAAAGTAATAAAGAGCATAAACCATTGGAATAAATTGCACATTTATAGGGCTCAACGCATAAGCCGTATCTGCTAAATCTAACCATAGCACAAAGCCAATCTACTAACGGTATAATGAATTCATGGACTTTGTAGTGTAATcatcctgaatttatttattacatttgggTTAAATTCAATTGTAAGCCTTTAGTGTTTTTTGAGCTGCAAGTGtacatgttaatttaaaaaaaaaaaaaagacttggcTCCTCAGTGGAATTTTTTATAGACTTTGTGAAATGTCTAATCTATTGCAGCAAATTCAAATCAGCAGATCAGTCATCAACGTGAAAAACATCAGCAGTCGGCTGTCCTGTGTCATTCTCATTCATCTGCACCCATTttcattcttaattttttttttaacatatgtgAGTAATTCTCACAGCCTTTCCTGtatatttctgaattcatttgtGTATGCTGTTTCTTCCAGAAGTCTGAAATGAGGGAACTTTTCATCATGTAGATGTTAAAGCCTGTATCCCTCACTGAGGCAACAGTATTGTCCTGAATTCTTCAAGCCCCAAATTATCTGATCCCAGCACTCCTTGAAAATAAAGACGTAATGAAATAGTACCAGCAATAATGCTATTCGTCATTTTGGTACTATGCAACTATAATCATTAGTATATTCAACTAATAACCAGTGAGCTGTGTACTGTTAAATGGTACATATCAGAAATCTTAACCTTGGATGTATGTTAATGTAATTGCCAGTTATTTTACCATAATATTTAAGTAACTTGattaaaatgtcataaattaAAGGAGCATTTTTCTTTGCTCAGAAGGCCTGCCATTATTAATGTACTGCTTTGATAAAATTGATACATGTGGAACAATGCCAGTTCATTCAACATTATGTGTAGCGATGTTCCCATTCAAAACTCAATCATGTACTGTAAATCTGCTTCAGTGACACTGTAACTATCAGATCTGaactttcttcctttcttcacaTTGCTGAATTGCTACGACAAATCAACACAAAAGCGTTTTTCTCGAGATCAGACTTGTCTTCGGAGTGATTTGTGAAAATCAAGGGGATGGAATTAATGTTGAAACTGTTTGTACTTGTACAGGAACGTGTTTAtcaaccacatctttttgacCACAGACGAGAAATCCTGCAGTGTTGATCATGACCACCTGACTCGATCCGTGTTGTGTGCCATACTTCTCTTAGTTATGTGCTGTTTGTATTTCTGTAAGTGTTGCTGTAATGTAATTTGATTTAGGACATTCTGTCCAACACAAAAAGGTGTTGAGCTTTATATTACCACACAACCATGCCGAAAATTACCAAAAATGTGCTCATTTGTTGTGTTGATTTCTTTTCTCATTGGTTTCTTGTATCATGTATTTTAAGATCCTATTCTCAGGGTTGAGCCTTACattgtttgtcatgtttttacTCCCAAATTTATTTATCCAGGACTGACTACTAGAACACTCAGTCAGCGCTAAATAATAAATTggcttcttttattttctctaacaCACTGCTGCACTCCTGTCTTATGTCTGCTCTGGCACCTTGATTTACgatgcttttttattttcagtttagtGCAGAGATGTGATTTATTTCACACAGACATGTTGAAGTCATAAATTTTTGGGTGTctgtcatttgtttaaaaaaatagagaaatacaTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228456 lncRNA downstream 306381 8464309 ~ 8541281 (-) True G192945
TU228465 lncRNA downstream 334192 8480420 ~ 8513470 (-) True G192953
TU228466 lncRNA downstream 362484 8483608 ~ 8485178 (-) True G192954
TU228459 lncRNA downstream 392359 8452197 ~ 8455303 (-) True G192948
TU228447 lncRNA downstream 411578 8429304 ~ 8436084 (-) True G192937
TU228680 lncRNA upstream 70233 8927981 ~ 8928648 (-) True G193138
TU228880 lncRNA upstream 296694 9154442 ~ 9156287 (-) True G193315
TU228886 lncRNA upstream 300443 9158191 ~ 9158569 (-) True G193319
TU228882 lncRNA upstream 301686 9159434 ~ 9184089 (-) True G193316
TU228901 lncRNA upstream 344244 9201992 ~ 9202672 (-) True G193334
XM_026915886.2 mRNA downstream 101556 8693259 ~ 8746106 (-) True abcc3
XM_026915887.2 mRNA downstream 101556 8693259 ~ 8746106 (-) False abcc3
XM_026915888.2 mRNA downstream 101556 8702511 ~ 8746106 (-) False abcc3
XM_026915557.2 mRNA downstream 169266 8674729 ~ 8678396 (-) True wfikkn2b
XM_026914607.2 mRNA downstream 326288 8514561 ~ 8521374 (-) True si:ch1073-272o11.3
XM_026915497.2 mRNA upstream 1456 8859204 ~ 8898061 (-) False mprip
XM_026915499.2 mRNA upstream 1456 8859204 ~ 8898061 (-) False mprip
XM_026915496.2 mRNA upstream 1456 8859204 ~ 8898061 (-) False mprip
XM_026915501.2 mRNA upstream 1456 8859204 ~ 8898061 (-) False mprip
XM_026915495.2 mRNA upstream 1456 8859204 ~ 8898061 (-) False mprip
trnal-uag_3 other downstream 372322 8475259 ~ 8475340 (-) True trnal-uag_3
trnap-agg_9 other downstream 389266 8458327 ~ 8458396 (-) True trnap-agg_9
XR_004579320.1 other downstream 2253272 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 3071642 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 3233708 5611120 ~ 5613954 (-) True G191430
trnaa-ugc_6 other upstream 219041 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 219370 9077118 ~ 9077199 (-) True trnal-uag_4
trnaf-aaa other upstream 219818 9077566 ~ 9077647 (-) True trnaf-aaa
trnaa-cgc_2 other upstream 221238 9078986 ~ 9079057 (-) True trnaa-cgc_2
trnaa-cgc_3 other upstream 223262 9081010 ~ 9081081 (-) True trnaa-cgc_3

Expression Profile