RNA id: XM_026915343.2


Basic Information

Item Value
RNA id XM_026915343.2
length 3166
RNA type mRNA
GC content 0.38
exon number 4
gene id tefa
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11202556 ~ 11209717 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGCTCGCGCGCTGAGGAGTTCAGTTAGGTAACTTTGCACAGCTTGTGAATGTCTGCAAGTTTTGTGTTCTGCAGCCTGTGAAaagccttcagtcttgtcttcttTTATAATTTGAGTTGTTAGTTATAAAATGAGTTGTACTGAAATGTCTTCAGATATTCCGGAAATTTTCAAAGCCCTGCTTGAGCaccctttctccttctccatcGTTAACGAGGACGaaaatgagaaagagaagCTTTCAGGAGATGAAGTGGACTCTGGAGGGGGAGTCAGTGGACTGGGGCCATCAGCTGCCTTGACGCCTGCTATCTGGGACAAGACAATTCCATATGATGGCAAAACCTTTCATCTTGAGTACATGGATCTGGAGGAATTTCTGATGGAGAATGGTATCCCTGCTTCGGAACAAGTCCAGGAGAAGAGCCTTGCTAAAGAGAGCTCTAAGCAACTACTAGAGAAAGCCCCCACCATCGTCCTAAAGACAGAACCAAGTCCAGCATCTCCTGTCTCTCTTCTGCCAACCGTGGAGCTGGAGCAGTGTGAAGAAGAAGTAATAACAACTGTTGTATCAAACTCTGACTCAGTACAGACCAAAACAGGCCTAACCACAGAGAAGGAACGTCTGACACCAGATCCCATTAACCCAGAGGACATTGAGATAGCAGTGGCCTTCGAGCCAGATCCTGCAGACCTTGTGCTTTCCAGTGTACCTGGAGGAGAACTCTTCAACCCTCGCAAGCATCGCTTCAGTGAAGAGGATCTCAAACCACAACCCATGATGAAGAAAGCCAAGAAAACATTTGTGCCTGAAGACCAGAAGGATGAGAAATATTGgcaaagaaggaagaagaacaacattgCAGCAAAACGTTCCCGGGATGCCAGGCGGCTGAAGGAGAATCAGATCACAGTCCGTGCAGCCTTCTTGGAGCGGGAGAATATGGCTCTGAGGCAGGAGGTGGCTGAGCTGCGCAAGGACTTAGGAAACTGCAAGAAAATCGTTGCTTTCTATGAAACAAAATACGGATCACTGTAAGAGATTGATCCTGGCAACAGTTGGACAATTTGCATTTTCAGAAGAAGTCAGTAAATCCACTCCATCTCATGACTAAACTGAAACCTTTACTACAGTCACATTTTGCCTTGtttctttactttatttctatattacTTTTTATGATGCTAGTCCAAACCTTAGACACTCTTGGAAAAAGAGGTTTTTACTGAAACCTGGCCCCAGGTAATGGACTGTGTTTAATAAGGTGGTGTAAGGGACAAAATGGTGACTTAAAGGGatttaaaaagctttattttaacaGCTGAAATCATATTGCACATGGTCAGTGAAAGCATACATATCTGCCTAACTGTAATTATATTAAGCCCACCtaattgtaattaaaatttaattatataaacatatttttttaaatcatattttaaccTTTAGTAacagtttatttaaatcataacacattcataaacattgcttaaatattttagaaagcAGTACTGGAGTGTGTATGTAAGGATTGTGTCAAAGTTTGTGAGATGACATAAAGGTTTTTTTGAAGTATTGGTTAGTCTTTACACGAAAGCGAGAAGAAGCCCTGAATATTAATATGGTGTACAtattgtatctgtatttttcaaacatttttaaaaatgttttataaagtaCCCCTTGTCATCTATCGTTTAGGGAAGTGTATGTAGTGTATTGAATACTCTTCAACTGAAGTATTAATAATCCATTTGTATTCAAAGCTATAATGAAGCACCATTAAAATACAACTACACTTGTTTGTGAAGCCAATATGATAGCCAAATGACTAATTTTAATACTGTCAAAATAAAGTGATaatcatatttgtatttataagtTTGAAGCACTGTGTATACCTTCTCAAATTAATAAGGATAAAAAATGATCTCAGTTGGCTCTTAATGATATTTGGGGGTTCATTCTTAGACGTTCTTCCTGGAAGCATGAGGAAGAGAATTAAGGTTGAAATTCAGATTGAATGGGTGGTTATGTGACTTGGTGAGTTGGGACGGCGAGATGGAAAACACTGTGTGTAAAACCAGTATGTCTTGTGACTGAATCATTATTCCAACTTCTCTATCTCTCAAAATGTCATGTGACCAAATTGGCTCGTGCATTTTTAATTGAACATTTTTACTGTTACAGATTCAtagaaagataaataaaaatagtacaaCAGGGGAGTACACTAAATTCTATGCTTTTCTTGTTTCTAATTttgtagactttcagctgtGGTGAATGGTAAAGAGGCTGTTCAGTTATTTCTGATCTAAAGCATACCCATTACTCATGTTTGATGGAAGGGCTTCTTTTTCAAGGTAGTTATATTACCATACTGCCTTAGATGTGAGTTTATCAGGGACTACTTTGCATCTCATATTATCAGTGCATTTACTTGAGCTGCTTTGAATTATTTGTTGACTAAATATGAGATTTCTATCTGTAGATATTATAGATAAAAGTTAATGGCATTGTGTCTCAGCGACGTTAACCTGTTAAAAGTTTGGTTAATATACTAGAGCTTCCTGAAAGAATGATGTTTGTCTCTTTTGTTAATAGAATGAAACTGCCCACCAGGCACtgagtaaatgttttttaagcaaataaattatttagccCTTTAAGTGTGACtttaaactgaaattctgattggtcaccaGAAAGGGTTGGTGTACTGGCAAGCTCCAGGTCAATAATCTCAGAAACATGGTTCAGAATGCAAGATTGGATTTCCAGGTTCTAACTTGAAAGGAAAGAGATgtaccacatttttttttatctgtactGCATGTCTAATCAAAGCTTTATTTCATGTTGAAAGGGGATTTATACTTGTGTTTCTATATTCAGAAATCTCTGGTCTGAGGTCACTATCACTCTAGTTCATGTCTGTTACTGAGCAAACATCATTCCAGCTCCAGATCTATACAGACTGAGTCCAGTTCTAGGCTTTAACACACTGACCAGGGCTGGTAATTAACCATTTGTGAGCAGGGAGAACATTAAACTGTGCTGTAATGACCTCTGGTTTATAGAATATTGCTTTTTTGTAACTTCTGTGCTGAAGGTTCCCTGCTTATACATGTTATTAAAGAGATTGTGTTTTGTCAGTA

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230204 lncRNA upstream 82006 11120318 ~ 11120550 (+) True G194380
TU230113 lncRNA upstream 106378 11093163 ~ 11096178 (+) True G194293
TU230188 lncRNA upstream 138874 11062164 ~ 11063682 (+) True G194365
TU230097 lncRNA upstream 234523 10965638 ~ 10968033 (+) True G194278
TU230092 lncRNA upstream 236939 10964950 ~ 10965617 (+) True G194276
TU230242 lncRNA downstream 38046 11247763 ~ 11248107 (+) False si:ch73-139e5.4
TU230438 lncRNA downstream 168744 11378461 ~ 11379190 (+) True G194571
TU230527 lncRNA downstream 383175 11592892 ~ 11593091 (+) True G194627
TU230523 lncRNA downstream 387813 11597530 ~ 11602441 (+) True G194623
TU230532 lncRNA downstream 404672 11614389 ~ 11621269 (+) True tmem106a
XM_026914997.2 mRNA upstream 2507 11186325 ~ 11200049 (+) False zc3h7bb
XM_034309323.1 mRNA upstream 2507 11186737 ~ 11200049 (+) True zc3h7bb
XM_026914905.2 mRNA upstream 44166 11150082 ~ 11158390 (+) False cdc42ep1a
XM_026914906.2 mRNA upstream 44166 11150082 ~ 11158390 (+) True cdc42ep1a
XM_026914907.2 mRNA upstream 44166 11150082 ~ 11158390 (+) False cdc42ep1a
XM_026915270.2 mRNA downstream 6525 11216242 ~ 11225898 (+) True aco2
XM_034309083.1 mRNA downstream 18028 11227745 ~ 11231747 (+) False csdc2a
XM_026914744.2 mRNA downstream 18030 11227747 ~ 11231747 (+) True csdc2a
XM_026914747.2 mRNA downstream 18030 11227747 ~ 11231747 (+) False csdc2a
XM_026914743.2 mRNA downstream 18429 11228146 ~ 11231747 (+) False csdc2a
trnal-aag_8 other upstream 1137930 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1567489 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1688721 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1689925 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 1690316 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 76480 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 1262966 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2273584 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2273584 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5646053 16855770 ~ 16863495 (+) False anapc16

Expression Profile