RNA id: XM_026915353.2


Basic Information

Item Value
RNA id XM_026915353.2
length 5250
RNA type mRNA
GC content 0.42
exon number 7
gene id maz
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4962360 ~ 4972009 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaaaaaaaaaaaaaaagaaaaaaaaaaggaaagatgtCATCGTGCGAAGGGAAGCGCCGAGGTGGAGCGGTAGGCCGCGGCCGGGCTCCGGCACCACTTGCCCGGGTCACGGCGTGAACGCAACACCGAGGCTTCGACCAAAACACCCGATTGGCCTGTTCGGGGCGGGCGGGGGGAAGCCAGGGGAGGGggacaaaaataacaacacagaTTTATGAATCGGTTCGGTTTTTTAAACCTCTTTCAAAACGCGTCAGTCCCATACTGTGTGACGGTTAAAACAAGGTCTAAAAACGAAGCAGATCATAATGTGTTTTGCTGCATGTTGTGTGTAAGGTTGTATAACTAACAATTACTGCTTTCGTTCGTCGAGTTGCTTAATTGCGTGTTAAGTTTCCGACGGTTCAGCGAACATTGCGGTTAGTTTACATATACATGTAGTAGTGATAATTGTCCGGTTTGAACTGGATTATAACAGCGAGCGCTTCTGTGCAGATACACTGATTTTAATCCATCACTGCGATAGTTCAGTGTATCAGGCAATAAAAGTGACATtctgactattattattatcattattattattattattattatcgcaGTGCTGGTAGGTTTCTTATGTTAGAGGACACCAGCAAGTCGCGGCTGAATCGGAAAGTTTTAGTCTGTAGTTATTTATCTCTTACCTGCGGAACAACATGGACACTGCATGGAGCAGTTTTCTCTTCCAGACCACGCCCACCCAAACCCATCTGGAGGGCTCTCTCCAATCAGAGCTCATGCAGGTCCACGCGAGCTCGCCTCAGAGCCCGCCCCCCGAGCCCGTGGCCACGCCCCCGTCGACTGTGGACACCACCGCCCTCAGTGAGGACCCTGTACCTGAAAAGCCACCAGTTCGACCAGGCCGTGCTGCTCATATCTGTGCCATCTGCAACAAGCAATTCAAAAATAGCTACAACCTGCGGCGGCACCAGTCTGTTCACACAGGTGTGCGTCTAAAAGGAGGGTCCTCCCAGAACCGGGAAGGCGGCTCTAAAGAGGCTACTGAGCCTCTGTCCCTTCTCCAACTCAGTATAGTCCCACCCACTTCAGGGCTTCCCACACCGCCTCCGCAGCAGCCGCTGCTTACTCATGACACCAGTGATTTAGCCATGACCAGCACAGTCACGCCCCTTCCCCCCCCAACAGCCATCGTCATGCCAACGGGGGAGCCAGTCCAGAGGCCGGTGAACCCAACCCCAAATGCTAATGTGGTGCGAAAGAATCACGCATGTGAGACTTGTGGGAAGGCCTTCAGGGACGTTTACCACCTGAATCGGCACCGGCTCTCGCACTCGGATGAGAAGCCCTTCTCCTGTCCCGTGTGCCAGCAGCGCTTTAAGAGGAAAGACCGAATGAGCCACCACGTGCGCTCACACCAGGGTGGCGTTGAGAAGCCCTATGTGTGCCCGCACTGTGCCAAGGCCTTTTCTCGCCCTGACCACCTCAACAGCCATGTCAGACAAGTTCATTCTACAGAACGACCTTTTAAATGTCCGacGTGTGAATCGAGTTTTGCCACAAAAGATCGACTGCGCGCTCATATGATCCGGCATGAGGAGAAGGTTCCATGTCACATCTGCGGCAAACTGCTCTCAGCTGCATACATCACTGATCACATGAGGGTGCACAACCAGTCACAACATCATGCCTGCCATCTGTGTAACAGAAGTTTTACAACGCTTACGTACCTGCGCATACATGCTCAGAAGCACCACGGTCAGGAGTGGAAGGAAAGCGGCTTTGGTTCCAGCGGTTCTGTTCTAGTATGTCATTTGTGTGGCGTGCACTGCAAGACCCTCACGCAGCTGCAGGGCCACATGGGTACCCACAATCCCCCAGGCAGCAGCAGTGGAGAGGGTGCACCTGATGGCACAGTGGtgctgagcagcagcagcagcagcatggcACCGGCACCTGCTGTCTTTGTGAGCGCCAACACCATGGTGGACCTGCTGGTCACCGACTGTTCCTGCATCGCACAGGAGCCACAGAGCTAGTACTGCATGCCTGTAACACACATCTATAGTCACAGACATCCAcatgcaatcacacacacacacacacacacacacacacacacacacacaagcacccaGCTCTGTACATACCATTGTATTGCATAGGACATGTTTATGTAAATGGTATATACCAGGACTATTCAATTAGCAGGTTGTTAACGATACTATAATAAAGTTGTTGTAATTGATTTTGTAGCTAAACTGTCTTTACATTCTAATAGCAATCAGTAAAACTTTGGGAAAATGTGTGACTGGGCTCTGGAACCAGCAACTAAAAATGAACAAGGTCGTTCTCCTTATATTAAGCAATCAGGAAACTTCTTTTCGAAGAGGTAGTCCTCTCTGCATGTGCACAGGCAGGTCATATAAGTTTCGCTATAAATAAGCAAGAAGGGAAGCTCAATCTTAAATGGGTCGTCTTAGGATTATGGAAGAGTCATTGCTATATCTTACAGAAGTGATTGCAAAGAAGGCTGACATTTGACCAAAATTTCTGGTCTCACTGTTGATGGATTTGAGAAAATGAAGAGTGGAAATGAAAGCATACAGGAAAACAAACAGGACTGAGCAAGAGAGAAGAGTAAACATTTGTGTCTTCCAGTGCTGGAGAGACTTGATAGATTTGAAGTGCTTTGCTGCTTGGTGGAATTATTATGCTTAGTGTCATATTTGTGAGGATGAATTCCTTCCAAATTTACATGACATGGTTAACTAGAAAGAAAACAGCCCTCCAGTGTCTCAGTGTTTAGCCATGAGTGTCGTTTGCTTGGATGTCGCTTACAAAAGCATCAATGTTGGTGCCTCAGATCTACCCAGACAATTGCACACTGATtctacaaattaaattattaagtgTATGCATTGCTAAAtttgttgatctgatatcaaGTTTTTTAACTGCTTGCTGTGACCCAAGCACTGCCACTTTCCGCTTCCTTGTCTTTAAAAGGAGGATGTTTGGATAGAGCAAGTGAAGTGTCTAAGTCTGGCaaaaattagagaaaaaatCTTCAAAATCACTAAATATTGAACAGCTTTAGCGAATGCTAAAACCTTCCTAGACAACATAGTGACATCCACTTCTTATCAGTTATAATCACTGTATTGTGTTGTCATTGTGTCTTTTAGTCACAAGATCACTGATAGATCAAACATTTATGTGCAGGTTCAGCATGTCTGTCTCATTGCCAAAAAGGTCAGTAGtcataaatagttaaaaataaataaataaataaatatgaatagtaAAAAAACAATCCTGATAGACTAATAAATACTTTAGCccatgtgtgttgtgtgataaAAGCATGGGTCCCATGCAGATTTGCTTTCCATCACAAAGTAAAAAGAATTACATTGATTGATGTATACTGATGAAATAATAGCTCTGTTGTGTcgttttattgtgttttgttctaaaaaaatatattgtagcATGCTTTTGTTTACCATTAGGCTGTTGACTTGTATTTCCCTACATGATGAATAGCCCTGGTATATACTataactctgtctctctctctctctctctctctctctctctctcttaaacaTACCAATCCACATTGTTGAGGAAATACTGTGAAAAGAGCTATTACACAGCTAGctgagcagacacacacacatactcaccaATTACACAGCCACTGTAGCAAATAAGAAAGGGAACTCAATACGCATGAACACTACGTATACCAGTCTCCACAGCACGATGTAGATCTTCAGTGTATTATTGCAACATGATCAGAGGTGCCTGTGAAGTCCATGGTGGCTTCAAAGTGGCATGAGGGCAATTAGACACTTAATTTCAGTACTACGTACGATTGCACTGGCTGGATCTCTCTATCTCCTTATTGTTGTTCTTAAAATCTGTTTTGCTCTTATTGCTGCAGGATACAACGATACTGTGATTGTGACTTCCTACTGTATTTCATATTCTGCTCTCTCTGCCACACCTTTCTACTCACACACTCTAAACCATGAAGAGGTGAAAAGgggttgataaaaaaaaaagaggtcaaATAAAATGAGAACAGAAGGAGCGATGCAGGGAAACAAAGGTGTGGAGCAGTTTGACAATTTTCTTGTCTTCTTAACTCAAGAGATGGAGCACCTCACTCTAAACTTTAAAGGCAATGCtttgggaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagtaaaatGGATAACTGTGTCTAGAGCATTAATGGTTTGGTAACAATGTGTCAAAAAAGCAAGAGTTGTATTCAGGATCATTGTGCACCTTAAAAAGTTAACCAAGATTGTTTTCCTTAGTGAATTTGGTTAGTAAGTGAAGTCTTGGCCAAAGGAGcctcgttaaaaaaaaaaggcgaaaCGCTTGGTTGACTTAGTTCAATAGGACACTACATCTTCGTGATCTTCAAGCAAATTAGAAAATGCATAAAGGAACTAACTgatgcttgattttttttcttactgcaagcaaaaaaaagctCATACAAAATGAATGCAACTTATTGCTTCTAAGAGGACtaagaaaaattatattttggcCATGATTGTTATTCATGCTGCGTTTTTCATTGTGTGAAGCAAGTGTTTAAAGGAAGGGCTTAATCAAACAACTGAATTTAATAGCCAGAAATGAGTATATAGTCCACATGTtgagacttaaaaaaaaaaaaaaaaaaaagaaaaaaaaaagatttttgtacTGGAGTGATTAGTTTGAGCAGTTTAATGTTGGTACTGTACAATATGTGGTCATTCACTAACTTAAATCTTTTGTAATTGGATATTTTGTTTGATCAGTAATTGTTTATTAAGCTCTGAATCATGTTTAGGTTATTCTTCATCTAGCACTAAGCTGAATACCTCTCCTATAGGAATCAGTAGAGTTCCGGCACTGCATCTCAATGCCTTATTGTACCACTCTACCCTGTTTTAATGAATAAGACTCTAAAGGTATTTTAAATTGTAGGCTtggattcagtacaaaatattaatgggatgtatttatatttatatttttatatttctcaaCAGTATGCATGCCTATTAGCAATTgttagagcaaaaaaaaaatagaattatgTTGATGCTTACCATGATCATGaatattatgtcattattttgtagattatgtagatcatgttattattttgtaattttgacTATTAAAAAGAAAGGCAAGTAATGATA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225933 lncRNA upstream 122991 4755097 ~ 4839369 (+) False G190865
TU225936 lncRNA upstream 122991 4755097 ~ 4839369 (+) True G190865
TU225852 lncRNA upstream 333484 4625619 ~ 4628876 (+) True G190797
TU225848 lncRNA upstream 365431 4596690 ~ 4596929 (+) True G190795
TU225827 lncRNA upstream 475604 4486523 ~ 4486756 (+) True G190775
TU226075 lncRNA downstream 87508 5059517 ~ 5063419 (+) True G190964
TU226144 lncRNA downstream 284432 5256441 ~ 5262085 (+) True G191026
TU226154 lncRNA downstream 297238 5269247 ~ 5282643 (+) True G191032
TU226403 lncRNA downstream 331132 5303141 ~ 5304909 (+) False gngt2b
TU226407 lncRNA downstream 336210 5308219 ~ 5309374 (+) True G191258
XM_026914978.2 mRNA upstream 751 4922230 ~ 4961609 (+) True taok2b
XM_026915918.2 mRNA upstream 125319 4828170 ~ 4837041 (+) True prkar1ab
XM_026915625.2 mRNA upstream 151827 4787766 ~ 4810533 (+) True mms19
XM_026915253.2 mRNA upstream 211510 4731130 ~ 4750850 (+) True antxr1c
XM_026915254.2 mRNA upstream 211510 4737916 ~ 4750850 (+) False antxr1c
XM_026915912.2 mRNA downstream 5868 4977877 ~ 4988518 (+) True tlcd3bb
XM_026914593.2 mRNA downstream 26882 4998891 ~ 5005921 (+) True vps25
XM_026915710.2 mRNA downstream 38578 5010587 ~ 5059438 (+) True wnk4a
XM_026915711.2 mRNA downstream 38578 5010587 ~ 5059438 (+) False wnk4a
XM_026915778.2 mRNA downstream 91586 5063595 ~ 5070223 (+) True cntd1
TU225934 other upstream 122991 4755097 ~ 4839369 (+) False G190865
TU225847 other upstream 367247 4593107 ~ 4595113 (+) False lrrc18b
trnae-cuc_25 other upstream 529048 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225438 other upstream 1179865 3782131 ~ 3782495 (+) False rasd1
TU225191 other upstream 1557351 3401267 ~ 3405009 (+) True G190212
TU226411 other downstream 365244 5337253 ~ 5340563 (+) False LOC113527051
TU226808 other downstream 997734 5969743 ~ 5983237 (+) True G191581
trnas-gcu_1 other downstream 1243836 6215845 ~ 6215926 (+) True trnas-gcu_1
trnal-aag_2 other downstream 1244358 6216367 ~ 6216448 (+) True trnal-aag_2
trnal-uag other downstream 1250708 6222717 ~ 6222798 (+) True trnal-uag

Expression Profile